iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ggr-040093

Ensembl Protein ID

GGTG_06243T0

UniProt Accession

J3NY90; J3NY90_GAGT3

Genbank Protein ID

EJT76323.1

Protein Name

Ribosome biogenesis protein YTM1

Genbank Nucleotide ID

ADBI01000543

Gene Name

YTM1; GGTG_06243

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
GGTG_06243	GGTG_06243T0	GGTG_06243T0

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.00e-25	87.4	384	418

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd..tllvsGsdDgtikvWDlrt 32
           gH + v+cl   +d  + lv+Gs+Dgt++vWDlr+
   Q: 384  GHVNVVSCLGPsPDnsHSLVTGSYDGTCRVWDLRS 418
           89999***9779554688**************997 PP

Organism

Gaeumannomyces graminis

Functional Description
(View)

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Protein Sequence
(Fasta)

MEAPAQAEAT VKVLFTTTES GLELPESKQL LLVPADIRRY GLSRIVNSES MLDTPTPIPF 60
DFLVNGTFLR STIEDYLREN GLPFEKTLTL QYVRSLVPPV YQASFEHEDW VSAVDVLSES 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CAAGGCTGAG AAGGGAGCAA AAAAAAAAAA TTCTGGAGCA TCGCGGCGGG CGAACTCTTG 60
GTAATCCGTC CGCATACACT AATCTCTGCA TGTCACTAAA TCACCACACC TAAATAAAGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0000790--C:nuclear chromatin
GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0051276--P:chromosome organization
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	25.30	4.00e-31	127.00
IUUC-Atr-002544	Amborella trichopoda	26.90	6.00e-29	120.00
IUUC-Aca-004370	Anolis carolinensis	24.94	7.00e-33	133.00
IUUC-Aly-006455	Arabidopsis lyrata	24.84	1.00e-33	135.00
IUUC-Ath-006669	Arabidopsis thaliana	25.65	1.00e-31	129.00
IUUC-Ago-007864	Ashbya gossypii	35.08	3.00e-76	277.00
IUUC-Acl-008177	Aspergillus clavatus	47.37	5.00e-117	412.00
IUUC-Afl-008617	Aspergillus flavus	47.08	4.00e-119	419.00
IUUC-Afu-008752	Aspergillus fumigatus	46.83	1.00e-111	395.00
IUUC-Ani-009136	Aspergillus nidulans	46.61	2.00e-111	394.00
IUUC-Ang-009701	Aspergillus niger	45.68	3.00e-109	387.00
IUUC-Aor-009884	Aspergillus oryzae	47.08	3.00e-118	416.00
IUUC-Ate-010472	Aspergillus terreus	44.54	1.00e-69	254.00
IUUC-Ame-011432	Astyanax mexicanus	24.43	3.00e-30	124.00
IUUC-Bgr-012218	Blumeria graminis	51.70	5.00e-127	446.00
IUUC-Bci-013953	Botrytis cinerea	52.27	7.00e-140	488.00
IUUC-Bdi-014351	Brachypodium distachyon	24.79	3.00e-30	124.00
IUUC-Bol-015618	Brassica oleracea	30.40	6.00e-33	133.00
IUUC-Bra-017876	Brassica rapa	28.60	9.00e-36	142.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	31.65	1.00e-39	155.00
IUUC-Cin-025789	Ciona intestinalis	23.99	4.00e-24	103.00
IUUC-Cgl-026562	Colletotrichum gloeosporioides	55.24	6.00e-46	175.00
IUUC-Cne-027063	Cryptococcus neoformans	23.51	2.00e-20	92.00
IUUC-Dre-027907	Danio rerio	24.55	6.00e-29	120.00
IUUC-Dor-031082	Dipodomys ordii	23.50	7.00e-11	60.10
IUUC-Dse-031308	Dothistroma septosporum	43.66	2.00e-101	361.00
IUUC-Dme-032189	Drosophila melanogaster	24.94	3.00e-25	107.00
IUUC-Ete-032247	Echinops telfairi	22.07	8.00e-20	89.70
IUUC-Fox-037965	Fusarium oxysporum	56.08	3.00e-148	516.00
IUUC-Fso-038244	Fusarium solani	54.99	2.00e-143	500.00
IUUC-Gmo-039040	Gadus morhua	25.43	2.00e-31	128.00
IUUC-Gac-042117	Gasterosteus aculeatus	25.00	1.00e-26	112.00
IUUC-Gma-043756	Glycine max	27.31	1.00e-38	152.00
IUUC-Ggo-045179	Gorilla gorilla	22.91	8.00e-25	106.00
IUUC-Hvu-047331	Hordeum vulgare	24.68	6.00e-24	103.00
IUUC-Kpa-049304	Komagataella pastoris	35.20	5.00e-84	303.00
IUUC-Lch-050655	Latimeria chalumnae	24.08	3.00e-19	87.80
IUUC-Lpe-051675	Leersia perrieri	25.74	1.00e-32	133.00
IUUC-Loc-052868	Lepisosteus oculatus	25.11	5.00e-31	127.00
IUUC-Lma-053258	Leptosphaeria maculans	43.94	7.00e-105	374.00
IUUC-Laf-053993	Loxodonta africana	22.91	5.00e-25	107.00
IUUC-Mor-057114	Magnaporthe oryzae	73.28	0.00e+00	709.00
IUUC-Mpo-057463	Magnaporthe poae	89.06	2.00e-89	319.00
IUUC-Mtr-058367	Medicago truncatula	25.75	3.00e-32	130.00
IUUC-Mla-059107	Melampsora laricipopulina	27.01	4.00e-39	154.00
IUUC-Mvi-060362	Microbotryum violaceum	27.93	1.00e-30	125.00
IUUC-Mmu-063546	Mus musculus	23.79	2.00e-26	111.00
IUUC-Mac-065540	Musa acuminata	27.18	4.00e-32	130.00
IUUC-Mlu-067241	Myotis lucifugus	23.35	3.00e-25	108.00
IUUC-Nfi-068260	Neosartorya fischeri	47.03	1.00e-113	401.00
IUUC-Ncr-068719	Neurospora crassa	59.32	6.00e-144	502.00
IUUC-Nle-068981	Nomascus leucogenys	22.91	3.00e-24	104.00
IUUC-Ont-071646	Oreochromis niloticus	24.63	5.00e-28	117.00
IUUC-Oan-073453	Ornithorhynchus anatinus	23.49	3.00e-29	121.00
IUUC-Ocu-074008	Oryctolagus cuniculus	23.13	2.00e-25	108.00
IUUC-Oba-075712	Oryza barthii	26.17	7.00e-21	93.60
IUUC-Obr-076721	Oryza brachyantha	26.68	5.00e-34	137.00
IUUC-Ogl-077229	Oryza glaberrima	26.06	7.00e-35	139.00
IUUC-Ogu-078977	Oryza glumaepatula	22.46	6.00e-21	93.60
IUUC-Oin-079683	Oryza indica	25.79	5.00e-35	140.00
IUUC-Olo-080291	Oryza longistaminata	26.38	7.00e-17	79.30
IUUC-Ome-081834	Oryza meridionalis	25.79	3.00e-35	141.00
IUUC-Oni-082507	Oryza nivara	24.52	4.00e-30	124.00
IUUC-Opu-083396	Oryza punctata	25.21	1.00e-32	132.00
IUUC-Oru-085220	Oryza rufipogon	24.47	5.00e-30	123.00
IUUC-Osa-085767	Oryza sativa	25.79	5.00e-35	140.00
IUUC-Ola-087420	Oryzias latipes	25.65	2.00e-32	131.00
IUUC-Olu-087740	Ostreococcus lucimarinus	25.45	8.00e-24	103.00
IUUC-Pno-094929	Phaeosphaeria nodorum	44.44	3.00e-106	377.00
IUUC-Ppa-095429	Physcomitrella patens	29.65	1.00e-40	159.00
IUUC-Pfo-096337	Poecilia formosa	24.04	6.00e-31	126.00
IUUC-Pop-099977	Populus trichocarpa	26.17	6.00e-35	140.00
IUUC-Ppe-101848	Prunus persica	26.56	6.00e-36	143.00
IUUC-Pgr-103637	Puccinia graminis	26.35	4.00e-42	164.00
IUUC-Ptt-103781	Puccinia triticina	27.59	3.00e-45	174.00
IUUC-Pte-104135	Pyrenophora teres	43.00	2.00e-98	352.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	43.69	2.00e-98	350.00
IUUC-Rno-105114	Rattus norvegicus	23.57	4.00e-25	107.00
IUUC-Sce-106401	Saccharomyces cerevisiae	33.46	2.00e-75	275.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	32.66	3.00e-66	244.00
IUUC-Spo-108134	Schizosaccharomyces pombe	33.00	6.00e-63	233.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	53.51	7.00e-145	505.00
IUUC-Smo-108720	Selaginella moellendorffii	30.75	5.00e-33	133.00
IUUC-Sit-110311	Setaria italica	25.79	3.00e-29	121.00
IUUC-Sly-111178	Solanum lycopersicum	26.58	3.00e-35	140.00
IUUC-Stu-112778	Solanum tuberosum	26.89	1.00e-31	129.00
IUUC-Sbi-114193	Sorghum bicolor	25.74	3.00e-30	124.00
IUUC-Sre-115002	Sporisorium reilianum	30.56	2.00e-23	102.00
IUUC-Ssc-116066	Sus scrofa	23.35	1.00e-25	108.00
IUUC-Tca-121605	Theobroma cacao	27.49	2.00e-36	144.00
IUUC-Tre-121947	Trichoderma reesei	55.21	3.00e-145	506.00
IUUC-Tvi-122481	Trichoderma virens	55.01	2.00e-144	503.00
IUUC-Tae-123847	Triticum aestivum	25.30	4.00e-31	127.00
IUUC-Tur-126586	Triticum urartu	24.95	2.00e-27	115.00
IUUC-Tme-126900	Tuber melanosporum	38.97	2.00e-86	311.00
IUUC-Uma-129628	Ustilago maydis	26.21	1.00e-22	99.40
IUUC-Vvi-131009	Vitis vinifera	28.60	9.00e-39	152.00
IUUC-Xtr-132083	Xenopus tropicalis	23.31	4.00e-27	114.00
IUUC-Xma-133094	Xiphophorus maculatus	24.89	2.00e-30	125.00
IUUC-Yli-134531	Yarrowia lipolytica	31.40	8.00e-56	209.00
IUUC-Zma-135509	Zea mays	25.73	9.00e-32	129.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence