iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Dre-027462

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

PDZ domain-containing RING finger 3b

Genbank Nucleotide ID

BX000434

Gene Name

pdzrn3b; pdzrn3

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSDARG00000073869.3	ENSDART00000114330.3	ENSDARP00000101938.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	3.10e-07	31.3	14	74

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 4    eeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrli 65
           ++f+C + +++ +dP ++p+G+++ + ++  w+ ++ + cPv  q+++ ++l   l l++li
   Q: 14   PDFKCNLCNKVLEDPLTTPCGHVFCAGCVLPWVVQQSS-CPVKCQRISTKELNHVLPLKNLI 74
           79******************************999998.********************999 PP

Organism

Danio rerio

Protein Sequence
(Fasta)

MGFELDRFKG AVDPDFKCNL CNKVLEDPLT TPCGHVFCAG CVLPWVVQQS SCPVKCQRIS 60
TKELNHVLPL KNLILKLDIK CDNHARGCEK IVKLQHLAEH AEMCDYSPAK CRNKGCSEVL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTCCCCCATA GGAAGTCTCA GGCAATTAGT TCAGTCAGGA GAAGTGCCCG TACTGGTCTA 60
CTCAGTTTCT CTGAGCTCTT CTAATGACTT AACCCGAAGA GTGATCAAAC CCCTGCGCTA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001478--PDZ
IPR008974--TRAF-like
IPR003613--Ubox_domain
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS50106--PDZ
PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF00595--PDZ

SMART

SM00228--PDZ
SM00184--RING
SM00504--Ubox

Gene Ontology

GO:0031594--C:neuromuscular junction
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0007528--P:neuromuscular junction development

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001910	Ailuropoda melanoleuca	71.49	0.00e+00	1148.00
IUUC-Apl-003623	Anas platyrhynchos	72.13	0.00e+00	1067.00
IUUC-Ame-011171	Astyanax mexicanus	52.19	0.00e+00	749.00
IUUC-Bta-012364	Bos taurus	71.49	0.00e+00	1395.00
IUUC-Cja-019726	Callithrix jacchus	72.85	0.00e+00	1094.00
IUUC-Cpo-021680	Cavia porcellus	69.39	0.00e+00	1347.00
IUUC-Csa-023684	Chlorocebus sabaeus	71.83	0.00e+00	1399.00
IUUC-Cho-024555	Choloepus hoffmanni	84.39	2.00e-83	304.00
IUUC-Dno-029974	Dasypus novemcinctus	81.71	5.00e-38	150.00
IUUC-Dor-031125	Dipodomys ordii	69.16	0.00e+00	1289.00
IUUC-Ete-032745	Echinops telfairi	61.74	0.00e+00	636.00
IUUC-Eca-034276	Equus caballus	72.86	0.00e+00	1093.00
IUUC-Fal-037334	Ficedula albicollis	70.55	0.00e+00	1357.00
IUUC-Gmo-038706	Gadus morhua	77.30	0.00e+00	1481.00
IUUC-Gga-040586	Gallus gallus	71.93	0.00e+00	1372.00
IUUC-Gac-041605	Gasterosteus aculeatus	74.18	0.00e+00	1424.00
IUUC-Ggo-044706	Gorilla gorilla	71.83	0.00e+00	1402.00
IUUC-Hsa-046677	Homo sapiens	71.64	0.00e+00	1399.00
IUUC-Itr-048660	Ictidomys tridecemlineatus	71.64	0.00e+00	1369.00
IUUC-Lch-049637	Latimeria chalumnae	80.07	2.00e-149	521.00
IUUC-Loc-052305	Lepisosteus oculatus	80.41	0.00e+00	1587.00
IUUC-Mcc-055573	Macaca mulatta	71.92	0.00e+00	1401.00
IUUC-Meu-056805	Macropus eugenii	70.35	0.00e+00	1355.00
IUUC-Mdo-062581	Monodelphis domestica	73.81	0.00e+00	1443.00
IUUC-Mmu-063597	Mus musculus	70.96	0.00e+00	1387.00
IUUC-Mpu-065685	Mustela putorius furo	73.35	0.00e+00	1075.00
IUUC-Mlu-067150	Myotis lucifugus	64.37	0.00e+00	836.00
IUUC-Nle-068997	Nomascus leucogenys	71.62	0.00e+00	1373.00
IUUC-Ont-071534	Oreochromis niloticus	79.55	0.00e+00	1515.00
IUUC-Ola-086381	Oryzias latipes	76.30	0.00e+00	1506.00
IUUC-Oga-089068	Otolemur garnettii	71.92	0.00e+00	1391.00
IUUC-Oar-089252	Ovis aries	63.92	7.00e-98	350.00
IUUC-Pan-092366	Papio anubis	71.83	0.00e+00	1400.00
IUUC-Psi-093611	Pelodiscus sinensis	54.10	8.00e-84	303.00
IUUC-Pfo-096576	Poecilia formosa	77.64	8.00e-145	506.00
IUUC-Pab-098239	Pongo abelii	72.01	0.00e+00	1401.00
IUUC-Pca-100484	Procavia capensis	69.87	1.00e-179	624.00
IUUC-Pva-103202	Pteropus vampyrus	48.38	0.00e+00	759.00
IUUC-Rno-105931	Rattus norvegicus	71.23	0.00e+00	1386.00
IUUC-Tgu-116615	Taeniopygia guttata	72.55	2.00e-110	391.00
IUUC-Tru-118175	Takifugu rubripes	77.43	0.00e+00	1522.00
IUUC-Tsy-119569	Tarsius syrichta	68.64	0.00e+00	1091.00
IUUC-Tbe-127819	Tupaia belangeri	68.33	0.00e+00	1019.00
IUUC-Ttr-128328	Tursiops truncatus	68.68	0.00e+00	1068.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence