iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
iRefIndex	Mentha
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.00e-27	95.8	265	298

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 5    svtclaf.sd.tllvsGsdDgtikvWDlrtgvll 36
            +tcla+  d +ll+sGs Dg++ vWD+++ + +
   Q: 265  AITCLAYcADgNLLISGSEDGVVCVWDPKSLRHV 298
           59******666****************9887665 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Involved in meristem development. Acts as negative regulator of the CUC-STM pathway in shoot apical meristem (SAM) neo-formation.

Protein Sequence
(Fasta)

MEITVIASSS IDEGIGSWDL KTGTEQLQFK PCASPAHGLT AVGEKFLASS QLSARNTSGS 60
IFYWSWTKPQ AEVKSYPVEP IKALAANNEG TYLVGGGISG DIYLWEVATG KLLKKWHGHY 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TATAGATATC ACAAAACCCA GACTTGGAAT CAGTTTCTCT TTACTTCCCT CTTTCTCTGA 60
GCTATGGAGA TTACTGTAAT CGCTTCTTCC TCAATCGATG AAGGAATTGG AAGTTGGGAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR020472--G-protein_beta_WD-40_rep
IPR027295--Quinoprotein_ADH-like_fam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:1902184--P:negative regulation of shoot apical meristem development

KEGG

ath:AT3G49180

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001040	Aegilops tauschii	50.17	3.00e-77	281.00
IUUC-Aml-001819	Ailuropoda melanoleuca	30.13	6.00e-26	111.00
IUUC-Atr-002688	Amborella trichopoda	48.90	1.00e-105	375.00
IUUC-Aly-006061	Arabidopsis lyrata	88.61	0.00e+00	800.00
IUUC-Acl-008357	Aspergillus clavatus	28.69	4.00e-22	99.00
IUUC-Afl-008564	Aspergillus flavus	26.92	6.00e-21	95.10
IUUC-Afu-009113	Aspergillus fumigatus	29.01	1.00e-22	100.00
IUUC-Ani-009132	Aspergillus nidulans	28.23	4.00e-23	102.00
IUUC-Ang-009586	Aspergillus niger	29.66	2.00e-23	102.00
IUUC-Aor-009882	Aspergillus oryzae	26.64	6.00e-21	95.10
IUUC-Ame-010912	Astyanax mexicanus	29.48	2.00e-32	132.00
IUUC-Bta-013402	Bos taurus	31.09	5.00e-30	124.00
IUUC-Bci-013791	Botrytis cinerea	27.23	5.00e-16	78.20
IUUC-Bdi-015054	Brachypodium distachyon	42.82	1.00e-88	319.00
IUUC-Bol-016342	Brassica oleracea	78.15	0.00e+00	637.00
IUUC-Bra-016967	Brassica rapa	77.91	0.00e+00	635.00
IUUC-Cja-019758	Callithrix jacchus	29.62	2.00e-29	122.00
IUUC-Cfa-020495	Canis familiaris	33.20	2.00e-26	112.00
IUUC-Cpo-021438	Cavia porcellus	32.26	6.00e-33	134.00
IUUC-Csa-023416	Chlorocebus sabaeus	30.77	6.00e-30	124.00
IUUC-Csv-025918	Ciona savignyi	26.07	1.00e-22	100.00
IUUC-Cgl-026618	Colletotrichum gloeosporioides	26.05	6.00e-20	91.30
IUUC-Cne-026843	Cryptococcus neoformans	25.43	2.00e-21	96.30
IUUC-Dre-027560	Danio rerio	29.49	5.00e-32	131.00
IUUC-Dno-029315	Dasypus novemcinctus	33.33	2.00e-38	152.00
IUUC-Dor-030935	Dipodomys ordii	31.01	2.00e-35	142.00
IUUC-Dse-031492	Dothistroma septosporum	26.22	2.00e-24	106.00
IUUC-Dme-032059	Drosophila melanogaster	32.02	3.00e-38	152.00
IUUC-Fca-036068	Felis catus	31.41	4.00e-27	115.00
IUUC-Fal-037467	Ficedula albicollis	32.95	1.00e-33	136.00
IUUC-Fox-037903	Fusarium oxysporum	27.54	2.00e-23	103.00
IUUC-Gmo-039323	Gadus morhua	28.79	1.00e-22	100.00
IUUC-Ggr-040050	Gaeumannomyces graminis	26.87	4.00e-10	58.50
IUUC-Gga-040563	Gallus gallus	32.95	7.00e-27	114.00
IUUC-Gac-042641	Gasterosteus aculeatus	31.41	2.00e-32	132.00
IUUC-Gma-043856	Glycine max	54.19	4.00e-139	487.00
IUUC-Ggo-045137	Gorilla gorilla	31.09	1.00e-25	110.00
IUUC-Hsa-046335	Homo sapiens	30.77	4.00e-25	108.00
IUUC-Hvu-047685	Hordeum vulgare	48.59	3.00e-81	294.00
IUUC-Itr-048032	Ictidomys tridecemlineatus	30.13	4.00e-35	141.00
IUUC-Kpa-049129	Komagataella pastoris	27.78	7.00e-28	117.00
IUUC-Lch-049532	Latimeria chalumnae	31.72	8.00e-36	144.00
IUUC-Lpe-051321	Leersia perrieri	44.24	1.00e-75	276.00
IUUC-Loc-052471	Lepisosteus oculatus	27.68	2.00e-24	105.00
IUUC-Lma-053091	Leptosphaeria maculans	24.57	1.00e-19	90.90
IUUC-Laf-054331	Loxodonta africana	30.97	3.00e-28	118.00
IUUC-Mcc-055803	Macaca mulatta	30.77	6.00e-30	124.00
IUUC-Meu-056090	Macropus eugenii	30.55	4.00e-34	138.00
IUUC-Mor-057160	Magnaporthe oryzae	29.33	2.00e-18	85.90
IUUC-Mtr-058800	Medicago truncatula	55.20	1.00e-139	489.00
IUUC-Mla-058943	Melampsora laricipopulina	32.74	3.00e-21	95.90
IUUC-Mga-059282	Meleagris gallopavo	31.30	3.00e-30	125.00
IUUC-Mvi-060315	Microbotryum violaceum	35.59	1.00e-25	110.00
IUUC-Mmr-061127	Microcebus murinus	30.77	4.00e-30	125.00
IUUC-Mdo-062350	Monodelphis domestica	30.55	9.00e-34	137.00
IUUC-Mmu-063706	Mus musculus	31.31	2.00e-33	135.00
IUUC-Mac-065066	Musa acuminata	59.61	9.00e-74	268.00
IUUC-Mpu-066711	Mustela putorius furo	31.09	4.00e-35	141.00
IUUC-Mlu-068121	Myotis lucifugus	31.98	9.00e-29	120.00
IUUC-Nfi-068454	Neosartorya fischeri	28.63	4.00e-22	99.00
IUUC-Ncr-068914	Neurospora crassa	27.27	2.00e-18	85.90
IUUC-Nle-069518	Nomascus leucogenys	30.82	3.00e-27	115.00
IUUC-Ont-071435	Oreochromis niloticus	34.08	6.00e-32	130.00
IUUC-Oba-075873	Oryza barthii	40.78	2.00e-90	325.00
IUUC-Obr-076097	Oryza brachyantha	34.31	2.00e-47	182.00
IUUC-Ogl-077840	Oryza glaberrima	40.88	5.00e-92	330.00
IUUC-Ogu-077988	Oryza glumaepatula	40.78	2.00e-90	325.00
IUUC-Oin-079237	Oryza indica	35.95	3.00e-54	204.00
IUUC-Olo-080415	Oryza longistaminata	40.14	8.00e-87	314.00
IUUC-Ome-081952	Oryza meridionalis	41.24	2.00e-90	325.00
IUUC-Oni-082300	Oryza nivara	40.78	2.00e-90	325.00
IUUC-Opu-083436	Oryza punctata	34.76	7.00e-51	194.00
IUUC-Oru-085164	Oryza rufipogon	41.38	2.00e-91	328.00
IUUC-Osa-086129	Oryza sativa	40.88	1.00e-89	323.00
IUUC-Ola-086571	Oryzias latipes	31.13	2.00e-32	132.00
IUUC-Oga-088561	Otolemur garnettii	31.29	1.00e-31	129.00
IUUC-Oar-090131	Ovis aries	31.66	2.00e-24	106.00
IUUC-Ptr-091301	Pan troglodytes	25.99	3.00e-20	92.00
IUUC-Pan-092810	Papio anubis	30.77	4.00e-30	125.00
IUUC-Psi-093091	Pelodiscus sinensis	31.47	2.00e-24	105.00
IUUC-Ppa-095317	Physcomitrella patens	39.84	3.00e-60	225.00
IUUC-Pfo-096996	Poecilia formosa	32.69	6.00e-33	134.00
IUUC-Pab-097747	Pongo abelii	29.81	4.00e-28	118.00
IUUC-Pop-099609	Populus trichocarpa	56.66	1.00e-143	501.00
IUUC-Pca-100972	Procavia capensis	31.83	3.00e-25	108.00
IUUC-Ppe-101904	Prunus persica	55.41	2.00e-140	491.00
IUUC-Pva-102700	Pteropus vampyrus	31.14	1.00e-17	84.00
IUUC-Pgr-103616	Puccinia graminis	36.26	2.00e-24	106.00
IUUC-Ptt-103954	Puccinia triticina	35.71	5.00e-24	105.00
IUUC-Pte-104120	Pyrenophora teres	23.34	1.00e-16	80.90
IUUC-Pyt-104558	Pyrenophora triticirepentis	23.94	4.00e-17	82.40
IUUC-Rno-104933	Rattus norvegicus	31.73	2.00e-34	139.00
IUUC-Sha-107636	Sarcophilus harrisii	30.55	8.00e-36	144.00
IUUC-Sja-107783	Schizosaccharomyces japonicus	26.43	2.00e-25	109.00
IUUC-Spo-108192	Schizosaccharomyces pombe	26.88	3.00e-24	105.00
IUUC-Smo-109498	Selaginella moellendorffii	41.69	5.00e-84	304.00
IUUC-Sit-110770	Setaria italica	40.86	2.00e-84	305.00
IUUC-Sly-111453	Solanum lycopersicum	55.38	1.00e-139	488.00
IUUC-Stu-112384	Solanum tuberosum	56.11	2.00e-127	449.00
IUUC-Sbi-113952	Sorghum bicolor	40.38	3.00e-86	311.00
IUUC-Sre-115223	Sporisorium reilianum	32.98	1.00e-22	100.00
IUUC-Ssc-115627	Sus scrofa	30.45	7.00e-29	120.00
IUUC-Tgu-117404	Taeniopygia guttata	33.33	4.00e-33	134.00
IUUC-Tru-117629	Takifugu rubripes	32.27	1.00e-30	126.00
IUUC-Tni-119839	Tetraodon nigroviridis	30.13	5.00e-23	101.00
IUUC-Tca-121766	Theobroma cacao	59.51	4.00e-154	536.00
IUUC-Tre-122047	Trichoderma reesei	25.80	6.00e-23	100.00
IUUC-Tvi-122668	Trichoderma virens	25.87	7.00e-22	97.40
IUUC-Tae-125258	Triticum aestivum	43.18	1.00e-78	286.00
IUUC-Tur-126673	Triticum urartu	40.10	4.00e-69	254.00
IUUC-Tme-127070	Tuber melanosporum	25.77	2.00e-25	109.00
IUUC-Ttr-128735	Tursiops truncatus	30.77	1.00e-26	113.00
IUUC-Uma-129521	Ustilago maydis	32.64	2.00e-21	97.10
IUUC-Vvi-130872	Vitis vinifera	55.17	1.00e-137	482.00
IUUC-Xtr-131838	Xenopus tropicalis	37.30	1.00e-35	143.00
IUUC-Xma-134106	Xiphophorus maculatus	32.14	1.00e-31	129.00
IUUC-Yli-134551	Yarrowia lipolytica	25.78	5.00e-20	91.30
IUUC-Zma-134703	Zea mays	40.19	4.00e-83	301.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence