iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSMUSG00000037416.12	ENSMUST00000180611.7	ENSMUSP00000137871.1
ENSMUSG00000037416.12	ENSMUST00000041772.5	ENSMUSP00000045559.5

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress	GXD
DNA & RNA Element
AREsite	miRTarBase	microRNA	TRANSFAC
RepTar	miRNAMap	RAID2
Protein-protein Interaction
HINT
Post-translational Modifications (PTMs)
CPLM	PHOSIDA	mUbiSiDa
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	8.00e-13	49.2	2925	2962

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           H ++v ++a  ++  ++v+Gs  g+ik+W+l+++ ll+
   Q: 2925 HDSPVKAIAIdPTeEYFVTGSAEGNIKIWSLSSFSLLH 2962
           99*********777*****************9998887 PP

Organism

Mus musculus

Protein Sequence
(Fasta)

MNLHQVLTGA VNPGDHCFAV GSVGEQRFTA YASGCDIVIL GSNFERLQII PGAKHGNIQV 60
GCVDCSMQQG KIAASYGNVI SVFEPVSLPK KRKNLEFYSQ WQKSGQFFLD SIAHNITWDP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGCAGCTGCT GAGGGCGGCG GGGCCGCGGC TGGGCTGGGG CCGCTCTGGT GAGGAGCAGC 60
GCGGACTGCC GCGCTTCTCG GGCTGTGCGG CCCACCGACC CGGCTCGGGA GGATCGTGTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR022033--Rav1p_C
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12234--Rav1p_C
PF00400--WD40

SMART

SM00320--WD40

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001368	Ailuropoda melanoleuca	89.00	0.00e+00	5338.00
IUUC-Atr-002754	Amborella trichopoda	24.02	1.00e-18	88.20
IUUC-Apl-003377	Anas platyrhynchos	75.26	0.00e+00	4419.00
IUUC-Aca-004649	Anolis carolinensis	71.92	0.00e+00	4186.00
IUUC-Aly-006404	Arabidopsis lyrata	31.02	1.00e-33	140.00
IUUC-Ath-006612	Arabidopsis thaliana	30.69	3.00e-32	135.00
IUUC-Ang-009742	Aspergillus niger	29.51	1.00e-38	155.00
IUUC-Ame-010919	Astyanax mexicanus	64.35	0.00e+00	3036.00
IUUC-Bta-013088	Bos taurus	87.91	0.00e+00	5329.00
IUUC-Bdi-014471	Brachypodium distachyon	23.64	7.00e-17	82.80
IUUC-Bol-016375	Brassica oleracea	27.91	2.00e-30	129.00
IUUC-Bra-016630	Brassica rapa	28.39	2.00e-30	129.00
IUUC-Cja-019137	Callithrix jacchus	88.06	0.00e+00	5318.00
IUUC-Cfa-021215	Canis familiaris	89.36	0.00e+00	5366.00
IUUC-Cpo-022333	Cavia porcellus	83.60	0.00e+00	4800.00
IUUC-Csa-023151	Chlorocebus sabaeus	88.29	0.00e+00	5342.00
IUUC-Cho-024613	Choloepus hoffmanni	80.52	0.00e+00	1867.00
IUUC-Csv-026055	Ciona savignyi	30.71	0.00e+00	849.00
IUUC-Dno-029601	Dasypus novemcinctus	83.38	0.00e+00	4957.00
IUUC-Dor-030381	Dipodomys ordii	87.66	0.00e+00	1551.00
IUUC-Ete-032464	Echinops telfairi	80.07	0.00e+00	2548.00
IUUC-Eeu-035011	Erinaceus europaeus	80.71	0.00e+00	2439.00
IUUC-Fca-035735	Felis catus	88.88	0.00e+00	5347.00
IUUC-Fal-037367	Ficedula albicollis	74.64	0.00e+00	4314.00
IUUC-Gmo-038687	Gadus morhua	60.16	0.00e+00	2440.00
IUUC-Gac-041986	Gasterosteus aculeatus	60.54	0.00e+00	3381.00
IUUC-Gma-044099	Glycine max	30.17	6.00e-36	147.00
IUUC-Ggo-044811	Gorilla gorilla	89.13	0.00e+00	5385.00
IUUC-Hsa-045950	Homo sapiens	88.72	0.00e+00	5378.00
IUUC-Hvu-047213	Hordeum vulgare	22.73	1.00e-14	73.60
IUUC-Lch-050020	Latimeria chalumnae	69.81	0.00e+00	4003.00
IUUC-Lpe-051382	Leersia perrieri	26.25	4.00e-44	174.00
IUUC-Loc-052909	Lepisosteus oculatus	68.45	0.00e+00	3959.00
IUUC-Laf-054195	Loxodonta africana	88.21	0.00e+00	5299.00
IUUC-Mcc-055646	Macaca mulatta	88.23	0.00e+00	5354.00
IUUC-Meu-056627	Macropus eugenii	74.04	0.00e+00	1398.00
IUUC-Mtr-058725	Medicago truncatula	35.98	1.00e-38	156.00
IUUC-Mga-060009	Meleagris gallopavo	65.26	0.00e+00	3643.00
IUUC-Mmr-060784	Microcebus murinus	86.97	0.00e+00	5184.00
IUUC-Mdo-062914	Monodelphis domestica	81.78	0.00e+00	4926.00
IUUC-Mac-065224	Musa acuminata	32.00	4.00e-29	125.00
IUUC-Mlu-067458	Myotis lucifugus	86.10	0.00e+00	5120.00
IUUC-Nle-070123	Nomascus leucogenys	88.74	0.00e+00	5343.00
IUUC-Ont-071658	Oreochromis niloticus	60.71	0.00e+00	3422.00
IUUC-Ocu-074048	Oryctolagus cuniculus	85.47	0.00e+00	5088.00
IUUC-Oba-075826	Oryza barthii	31.86	7.00e-42	167.00
IUUC-Obr-076145	Oryza brachyantha	29.65	1.00e-39	160.00
IUUC-Ogu-078307	Oryza glumaepatula	31.86	8.00e-42	167.00
IUUC-Oin-080118	Oryza indica	31.86	7.00e-42	167.00
IUUC-Olo-080848	Oryza longistaminata	31.86	5.00e-42	167.00
IUUC-Oni-082792	Oryza nivara	27.16	3.00e-43	171.00
IUUC-Opu-084153	Oryza punctata	30.14	3.00e-41	165.00
IUUC-Oru-084415	Oryza rufipogon	31.86	7.00e-42	167.00
IUUC-Osa-085332	Oryza sativa	23.94	1.00e-20	94.70
IUUC-Ola-086945	Oryzias latipes	60.03	0.00e+00	3333.00
IUUC-Oga-088816	Otolemur garnettii	86.60	0.00e+00	5228.00
IUUC-Oar-089618	Ovis aries	88.01	0.00e+00	5317.00
IUUC-Ptr-090937	Pan troglodytes	88.49	0.00e+00	5349.00
IUUC-Pan-092151	Papio anubis	88.49	0.00e+00	5383.00
IUUC-Psi-093590	Pelodiscus sinensis	76.73	0.00e+00	4549.00
IUUC-Pfo-097445	Poecilia formosa	59.77	0.00e+00	3345.00
IUUC-Pab-098237	Pongo abelii	88.81	0.00e+00	5342.00
IUUC-Pop-098812	Populus trichocarpa	30.57	1.00e-30	130.00
IUUC-Pca-101008	Procavia capensis	83.11	0.00e+00	1572.00
IUUC-Ppe-101610	Prunus persica	28.93	5.00e-36	148.00
IUUC-Pva-102348	Pteropus vampyrus	83.11	0.00e+00	3234.00
IUUC-Rno-105076	Rattus norvegicus	95.38	0.00e+00	5627.00
IUUC-Sha-106860	Sarcophilus harrisii	82.51	0.00e+00	4967.00
IUUC-Sja-107657	Schizosaccharomyces japonicus	26.21	2.00e-25	112.00
IUUC-Sly-110968	Solanum lycopersicum	31.87	4.00e-39	158.00
IUUC-Sar-113751	Sorex araneus	83.56	0.00e+00	2408.00
IUUC-Ssc-116371	Sus scrofa	87.49	0.00e+00	5311.00
IUUC-Tgu-117108	Taeniopygia guttata	75.23	0.00e+00	4405.00
IUUC-Tru-117628	Takifugu rubripes	59.83	0.00e+00	3351.00
IUUC-Tsy-118837	Tarsius syrichta	82.23	0.00e+00	3218.00
IUUC-Tca-121789	Theobroma cacao	26.14	3.00e-35	145.00
IUUC-Tae-125726	Triticum aestivum	28.43	2.00e-34	142.00
IUUC-Tbe-127953	Tupaia belangeri	87.17	0.00e+00	2893.00
IUUC-Ttr-128991	Tursiops truncatus	87.78	0.00e+00	4556.00
IUUC-Vpa-130309	Vicugna pacos	87.01	0.00e+00	2967.00
IUUC-Vvi-131584	Vitis vinifera	37.24	1.00e-35	146.00
IUUC-Xtr-132582	Xenopus tropicalis	69.74	0.00e+00	4179.00
IUUC-Xma-134109	Xiphophorus maculatus	59.00	0.00e+00	3361.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence