iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
miRNAMap	RAID2
Protein-protein Interaction
IID
Post-translational Modifications (PTMs)
CPLM	dbPAF	PhosphositePlus
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.10e-17	62.0	124	151

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtik 26
           gH+ +v+c+++ +d + l s+sdD+ i 
   Q: 124  GHEKRVNCIQWhQDnDCLYSCSDDKYIV 151
           8***********66699*******9986 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MAAGGGGSCD PLAPAGVPCA FSPDSQAYFA LASSDGHLRV WETANNRLHQ EYVPSAHLSG 60
TCTCLAWAPA RLQAKESHQR KKRKSEAIGT NDQADLLALG TAVGSILLYS TVKGELHSKL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CGGGCGAACA CGTGGCTGCC GCGGAGCTAG AGCAGCAATG GCGGCCGGTG GCGGCGGTAG 60
CTGCGACCCC TTGGCCCCGG CGGGGGTCCC CTGCGCCTTC TCGCCGGACA GTCAAGCCTA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR007148--SSU_processome_Utp12
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04003--Utp12
PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0001650--C:fibrillar center
GO:0003723--F:RNA binding

KEGG

rno:362703

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001865	Ailuropoda melanoleuca	88.47	0.00e+00	1051.00
IUUC-Atr-002533	Amborella trichopoda	20.16	5.00e-23	102.00
IUUC-Apl-003242	Anas platyrhynchos	70.75	0.00e+00	756.00
IUUC-Aca-004607	Anolis carolinensis	68.74	0.00e+00	824.00
IUUC-Aly-006074	Arabidopsis lyrata	25.53	4.00e-16	79.70
IUUC-Ath-007222	Arabidopsis thaliana	25.53	1.00e-15	78.20
IUUC-Ame-011014	Astyanax mexicanus	52.63	4.00e-170	591.00
IUUC-Bta-012605	Bos taurus	87.98	0.00e+00	1063.00
IUUC-Bdi-014072	Brachypodium distachyon	20.55	4.00e-21	96.30
IUUC-Bol-016255	Brassica oleracea	27.03	6.00e-22	99.40
IUUC-Bra-016850	Brassica rapa	27.70	2.00e-23	103.00
IUUC-Cja-019620	Callithrix jacchus	88.65	0.00e+00	1070.00
IUUC-Cfa-020520	Canis familiaris	87.98	0.00e+00	1062.00
IUUC-Cpo-022456	Cavia porcellus	83.16	0.00e+00	1058.00
IUUC-Cho-024726	Choloepus hoffmanni	86.44	0.00e+00	999.00
IUUC-Cin-025761	Ciona intestinalis	36.29	2.00e-95	343.00
IUUC-Dre-028051	Danio rerio	52.37	7.00e-175	607.00
IUUC-Dno-030031	Dasypus novemcinctus	87.15	0.00e+00	1044.00
IUUC-Dme-031653	Drosophila melanogaster	26.69	2.00e-41	164.00
IUUC-Ete-032863	Echinops telfairi	71.43	3.00e-90	326.00
IUUC-Eca-033243	Equus caballus	87.94	0.00e+00	902.00
IUUC-Eeu-034970	Erinaceus europaeus	83.30	0.00e+00	757.00
IUUC-Fca-036009	Felis catus	87.97	0.00e+00	1045.00
IUUC-Fal-037264	Ficedula albicollis	69.22	0.00e+00	739.00
IUUC-Gmo-039124	Gadus morhua	55.08	2.00e-174	605.00
IUUC-Gga-040862	Gallus gallus	69.11	0.00e+00	812.00
IUUC-Gac-041468	Gasterosteus aculeatus	55.25	0.00e+00	637.00
IUUC-Gma-042795	Glycine max	22.13	3.00e-12	67.00
IUUC-Ggo-044432	Gorilla gorilla	89.15	0.00e+00	1079.00
IUUC-Hsa-047036	Homo sapiens	85.38	0.00e+00	1084.00
IUUC-Itr-048644	Ictidomys tridecemlineatus	90.32	0.00e+00	1095.00
IUUC-Lch-049553	Latimeria chalumnae	60.99	0.00e+00	728.00
IUUC-Laf-053462	Loxodonta africana	87.31	0.00e+00	1083.00
IUUC-Mcc-055239	Macaca mulatta	89.65	0.00e+00	1079.00
IUUC-Mtr-057977	Medicago truncatula	20.74	8.00e-18	85.50
IUUC-Mga-060079	Meleagris gallopavo	70.94	0.00e+00	746.00
IUUC-Mmr-061472	Microcebus murinus	87.48	0.00e+00	1059.00
IUUC-Mdo-061972	Monodelphis domestica	78.07	0.00e+00	957.00
IUUC-Mmu-063354	Mus musculus	93.14	0.00e+00	1127.00
IUUC-Mac-065064	Musa acuminata	24.25	5.00e-17	82.00
IUUC-Mpu-066877	Mustela putorius furo	87.48	0.00e+00	1058.00
IUUC-Mlu-067476	Myotis lucifugus	84.64	0.00e+00	1011.00
IUUC-Nle-069119	Nomascus leucogenys	89.15	0.00e+00	1074.00
IUUC-Ont-072093	Oreochromis niloticus	54.31	0.00e+00	668.00
IUUC-Oan-072944	Ornithorhynchus anatinus	68.93	0.00e+00	812.00
IUUC-Ocu-074472	Oryctolagus cuniculus	87.81	0.00e+00	1030.00
IUUC-Oba-075009	Oryza barthii	20.88	8.00e-16	79.00
IUUC-Ogl-077189	Oryza glaberrima	19.80	2.00e-15	77.40
IUUC-Oin-079064	Oryza indica	20.85	2.00e-15	77.40
IUUC-Opu-083604	Oryza punctata	21.52	5.00e-14	72.80
IUUC-Oru-084620	Oryza rufipogon	20.85	2.00e-15	77.40
IUUC-Osa-085345	Oryza sativa	20.85	6.00e-16	79.30
IUUC-Ola-086626	Oryzias latipes	54.18	0.00e+00	661.00
IUUC-Oga-087911	Otolemur garnettii	88.01	0.00e+00	1050.00
IUUC-Ptr-091603	Pan troglodytes	85.23	0.00e+00	1083.00
IUUC-Pan-092569	Papio anubis	89.65	0.00e+00	1079.00
IUUC-Pma-094287	Petromyzon marinus	51.45	5.00e-177	614.00
IUUC-Ppa-095327	Physcomitrella patens	26.25	2.00e-36	147.00
IUUC-Pfo-097292	Poecilia formosa	55.01	3.00e-180	625.00
IUUC-Pab-097878	Pongo abelii	89.15	0.00e+00	1057.00
IUUC-Pop-099418	Populus trichocarpa	22.04	1.00e-19	91.70
IUUC-Pca-100941	Procavia capensis	81.44	0.00e+00	951.00
IUUC-Ppe-101779	Prunus persica	21.82	4.00e-20	93.20
IUUC-Pva-102493	Pteropus vampyrus	79.90	0.00e+00	958.00
IUUC-Sha-107486	Sarcophilus harrisii	77.33	0.00e+00	948.00
IUUC-Smo-108825	Selaginella moellendorffii	22.40	1.00e-18	87.80
IUUC-Sit-110825	Setaria italica	22.56	2.00e-20	94.00
IUUC-Sly-111365	Solanum lycopersicum	22.65	2.00e-19	90.50
IUUC-Stu-112812	Solanum tuberosum	22.49	9.00e-18	85.10
IUUC-Sar-113326	Sorex araneus	90.83	2.00e-133	469.00
IUUC-Sbi-114426	Sorghum bicolor	21.44	7.00e-23	102.00
IUUC-Tgu-116726	Taeniopygia guttata	67.46	0.00e+00	802.00
IUUC-Tru-117848	Takifugu rubripes	54.05	1.00e-179	623.00
IUUC-Tsy-119091	Tarsius syrichta	61.81	2.00e-128	452.00
IUUC-Tni-120591	Tetraodon nigroviridis	54.91	0.00e+00	629.00
IUUC-Tca-121576	Theobroma cacao	25.20	3.00e-16	80.50
IUUC-Tae-125648	Triticum aestivum	21.90	5.00e-20	92.80
IUUC-Tbe-127832	Tupaia belangeri	88.17	0.00e+00	917.00
IUUC-Ttr-128812	Tursiops truncatus	87.40	0.00e+00	910.00
IUUC-Xma-133557	Xiphophorus maculatus	55.18	0.00e+00	628.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence