iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d024158	Zm00001d024158_T008	Zm00001d024158_T008
Zm00001d024158	Zm00001d024158_T002	Zm00001d024158_T002
Zm00001d024158	Zm00001d024158_T006	Zm00001d024158_T006
Zm00001d024158	Zm00001d024158_T001	Zm00001d024158_T001
Zm00001d024158	Zm00001d024158_T003	Zm00001d024158_T003
Zm00001d024158	Zm00001d024158_T004	Zm00001d024158_T004
Zm00001d024158	Zm00001d024158_T005	Zm00001d024158_T005

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.40e-21	76.1	108	144

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvll 36
           H ++v  +a+ +  +llvsGs+D+t++ WD+r+ +++
   Q: 108  HDAPVKEVAWiPQmNLLVSGSWDKTLRYWDTRQSNPV 144
           89999******777****************9998776 PP

Organism

Zea mays

Protein Sequence
(Fasta)

MASLTGLTAN PNPNKSFEIL PNPGDSVSSL SFSPKSNLLV ATSWDNQVRC WEIVGGNSQP 60
KASISHDQPV LCSAWKDDGT TVFSGGCDKQ VKMWPLLSGG QPQTVAMHDA PVKEVAWIPQ 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCCTTCTCTT CTGCCGTTCC CCCGGCGAGC TCTTTCTCTC TCGTGCGGCA ACTGGGCTAT 60
TGGCGACCGC CAACGCCGAC GATTACATTT ACACCAAGTG CCCAAGCCGT CTTCGACTAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR005135--Endo/exonuclease/phosphatase
IPR000477--RT_dom
IPR027124--Swc5/CFDP
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00078--RVT_1
PF00400--WD40

SMART

SM00320--WD40

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Nle-069395	Nomascus leucogenys	46.74	3.00e-67	248.00
IUUC-Ppa-095202	Physcomitrella patens	71.76	3.00e-114	403.00
IUUC-Sit-110521	Setaria italica	97.49	1.00e-167	581.00
IUUC-Sbi-113852	Sorghum bicolor	98.57	4.00e-169	586.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence