iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d044514	Zm00001d044514_T007	Zm00001d044514_T007
Zm00001d044514	Zm00001d044514_T004	Zm00001d044514_T004
Zm00001d044514	Zm00001d044514_T002	Zm00001d044514_T002
Zm00001d044514	Zm00001d044514_T003	Zm00001d044514_T003

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
DUB/USP	1.60e-46	161.1	190	384
ULD/UDP/UBQ/UBQ_Other	2.90e-10	41.9	56	108

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

DUB/USP

   S: 2    GlkNlgNtCYmNSvLQcLsnipelrelllekkkeklneenpkepkgellkslqklfeelwkskkkavsprellkalkkeaeefs.....g 86
           Gl NlgNtCYmNS+LQcL+++pel+++ll+ ++ +++ +  ++ + +l+ + ++ f  l +++ + v+p ++l++l+k+ ++f       
   Q: 190  GLYNLGNTCYMNSTLQCLHSVPELKSALLS-YSDTVRGNGIDQASHNLTVATRNTFGDL-DQSVRPVAPLQFLQTLRKKYPQFAqqhnnV 277
           9*****************************.****************************.99999******************9899989 PP
   S: 87   yeqqDaqEflaflldqleeelkk....eknkpkeeeeeedkselsdeaeekkkkknkslisdlFqgqlksqikclecdnvssreepfldl 172
           y+qqDa+E++++l+ +l+++l++    ++  p +++     ++l  e  +   +  +++  +    q k  + c e +++s ++e+ ++l
   Q: 278  YMQQDAEECWTQLVYTLSQTLTSdsseSAALPMKQL---FGIDLAGEVHRIAYNYRRKIWYRSSSNQQKIMVHCAESGEESMETESVYSL 364
           *********************553222222233333...3333555566777777789999999999999999***************** PP
   S: 173  slpvpgkeetkkeslqdcLe 192
           +++++++ +  +e +++ L+
   Q: 365  KCHISQDVNHLHEGIKHGLK 384
           ******99988887777775 PP

ULD/UDP/UBQ/UBQ_Other

   S: 20   sdtVaeLKekiekklgippeqqrLiykGkiLeddktLadyglkdgstihllek 72
           s +  ++K ++++++g+ppe+q++++kG iL+dd +++ +g+kdg++++++ +
   Q: 56   SQPPIVFKTQLYTLTGVPPERQKIMVKGGILKDDADWSTLGVKDGQKLMMIGT 108
           5566689*******************************************976 PP

Organism

Zea mays

Protein Sequence
(Fasta)

MPTGELLSPL LRLRPHPPPP LYRSRRPRIL RFWFESAVVS VKWQKELFPG IEIDTSQPPI 60
VFKTQLYTLT GVPPERQKIM VKGGILKDDA DWSTLGVKDG QKLMMIGTAD EIVKAPEKGP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCCGACCG GTGAGCTCCT CTCTCCGCTC CTCCGCCTCC GTCCCCATCC TCCCCCCCCC 60
CTCTATCGAT CTCGTCGCCC CCGCATCCTC CGGTTCTGGT TCGAATCGGC GGTAGGTTAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0378--Hydrolase
KW-1185--Reference proteome

Interpro

IPR001394--Peptidase_C19_UCH
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom
IPR018200--USP_CS
IPR028889--USP_dom

PROSITE

PS50053--UBIQUITIN_2
PS00972--USP_1
PS00973--USP_2
PS50235--USP_3

Pfam

PF00240--ubiquitin
PF00443--UCH

SMART

SM00213--UBQ

Gene Ontology

GO:0036459--F:thiol-dependent ubiquitinyl hydrolase activity
GO:0016579--P:protein deubiquitination
GO:0006511--P:ubiquitin-dependent protein catabolic process

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002053	Ailuropoda melanoleuca	35.18	1.00e-91	330.00
IUUC-Atr-002725	Amborella trichopoda	56.31	4.00e-161	560.00
IUUC-Apl-004031	Anas platyrhynchos	35.80	2.00e-91	329.00
IUUC-Aca-004361	Anolis carolinensis	35.79	1.00e-92	332.00
IUUC-Aly-006078	Arabidopsis lyrata	53.97	5.00e-156	543.00
IUUC-Ath-007658	Arabidopsis thaliana	53.27	3.00e-156	544.00
IUUC-Bta-012553	Bos taurus	36.02	2.00e-93	335.00
IUUC-Bdi-014567	Brachypodium distachyon	69.61	0.00e+00	715.00
IUUC-Cel-018140	Caenorhabditis elegans	30.98	9.00e-64	237.00
IUUC-Cja-019516	Callithrix jacchus	35.56	8.00e-92	330.00
IUUC-Cfa-020808	Canis familiaris	36.27	6.00e-94	337.00
IUUC-Cpo-021688	Cavia porcellus	35.66	4.00e-92	331.00
IUUC-Csa-023429	Chlorocebus sabaeus	34.95	8.00e-91	327.00
IUUC-Cho-024347	Choloepus hoffmanni	35.73	1.00e-91	330.00
IUUC-Cin-025198	Ciona intestinalis	33.27	2.00e-69	256.00
IUUC-Csv-026007	Ciona savignyi	32.62	5.00e-71	261.00
IUUC-Cne-026963	Cryptococcus neoformans	29.62	3.00e-57	215.00
IUUC-Cme-027240	Cyanidioschyzon merolae	34.16	3.00e-50	192.00
IUUC-Dre-027647	Danio rerio	36.28	7.00e-94	337.00
IUUC-Dno-029967	Dasypus novemcinctus	34.83	4.00e-90	324.00
IUUC-Dor-030886	Dipodomys ordii	28.91	2.00e-56	213.00
IUUC-Dme-032079	Drosophila melanogaster	32.24	3.00e-76	278.00
IUUC-Ete-032351	Echinops telfairi	33.59	3.00e-75	275.00
IUUC-Eca-033461	Equus caballus	36.92	1.00e-96	346.00
IUUC-Fca-036210	Felis catus	36.09	7.00e-94	337.00
IUUC-Fal-037528	Ficedula albicollis	36.73	8.00e-91	327.00
IUUC-Gmo-038953	Gadus morhua	36.52	9.00e-87	313.00
IUUC-Gga-040462	Gallus gallus	35.62	1.00e-91	330.00
IUUC-Gac-041312	Gasterosteus aculeatus	34.50	1.00e-88	319.00
IUUC-Gma-043255	Glycine max	57.53	4.00e-170	590.00
IUUC-Ggo-045458	Gorilla gorilla	33.51	2.00e-75	275.00
IUUC-Hsa-045706	Homo sapiens	34.95	1.00e-90	326.00
IUUC-Hvu-047821	Hordeum vulgare	71.43	6.00e-117	412.00
IUUC-Itr-048654	Ictidomys tridecemlineatus	35.73	3.00e-93	335.00
IUUC-Lch-050464	Latimeria chalumnae	35.98	2.00e-89	322.00
IUUC-Lpe-051419	Leersia perrieri	72.14	0.00e+00	723.00
IUUC-Loc-052732	Lepisosteus oculatus	35.25	3.00e-94	338.00
IUUC-Laf-053822	Loxodonta africana	36.09	7.00e-94	337.00
IUUC-Mcc-055893	Macaca mulatta	34.95	2.00e-90	326.00
IUUC-Meu-056307	Macropus eugenii	33.45	3.00e-83	301.00
IUUC-Mtr-057901	Medicago truncatula	56.54	9.00e-170	589.00
IUUC-Mga-060016	Meleagris gallopavo	35.26	2.00e-90	325.00
IUUC-Mmr-060624	Microcebus murinus	36.45	1.00e-96	346.00
IUUC-Mdo-061809	Monodelphis domestica	35.19	2.00e-91	328.00
IUUC-Mmu-063869	Mus musculus	35.92	4.00e-92	331.00
IUUC-Mac-064876	Musa acuminata	60.30	4.00e-169	587.00
IUUC-Mpu-066480	Mustela putorius furo	36.27	5.00e-94	337.00
IUUC-Mlu-067866	Myotis lucifugus	36.40	3.00e-94	338.00
IUUC-Nle-070121	Nomascus leucogenys	38.66	3.00e-52	197.00
IUUC-Opr-070712	Ochotona princeps	31.16	1.00e-41	164.00
IUUC-Ont-071544	Oreochromis niloticus	35.45	1.00e-82	299.00
IUUC-Oan-073635	Ornithorhynchus anatinus	34.09	7.00e-66	243.00
IUUC-Ocu-074926	Oryctolagus cuniculus	34.71	2.00e-90	325.00
IUUC-Oba-075633	Oryza barthii	74.71	0.00e+00	739.00
IUUC-Obr-076423	Oryza brachyantha	70.83	0.00e+00	721.00
IUUC-Ogl-077913	Oryza glaberrima	71.56	0.00e+00	723.00
IUUC-Ogu-078435	Oryza glumaepatula	74.71	0.00e+00	739.00
IUUC-Oin-080072	Oryza indica	74.56	0.00e+00	740.00
IUUC-Olo-080535	Oryza longistaminata	64.52	0.00e+00	652.00
IUUC-Ome-081309	Oryza meridionalis	74.71	0.00e+00	739.00
IUUC-Oni-083113	Oryza nivara	74.71	0.00e+00	739.00
IUUC-Opu-083168	Oryza punctata	72.37	0.00e+00	705.00
IUUC-Oru-084253	Oryza rufipogon	74.71	0.00e+00	739.00
IUUC-Osa-085554	Oryza sativa	71.38	0.00e+00	721.00
IUUC-Ola-086998	Oryzias latipes	35.24	2.00e-85	309.00
IUUC-Olu-087818	Ostreococcus lucimarinus	36.25	5.00e-75	274.00
IUUC-Oga-088571	Otolemur garnettii	35.92	6.00e-93	333.00
IUUC-Oar-089526	Ovis aries	36.02	3.00e-93	335.00
IUUC-Ptr-091433	Pan troglodytes	34.95	2.00e-90	326.00
IUUC-Pan-091966	Papio anubis	34.95	8.00e-91	327.00
IUUC-Psi-093458	Pelodiscus sinensis	35.77	5.00e-84	304.00
IUUC-Pma-094343	Petromyzon marinus	36.31	1.00e-52	199.00
IUUC-Pfo-096514	Poecilia formosa	34.69	3.00e-81	295.00
IUUC-Pab-098477	Pongo abelii	32.77	3.00e-56	212.00
IUUC-Pop-099221	Populus trichocarpa	57.35	7.00e-165	573.00
IUUC-Pca-100791	Procavia capensis	27.10	3.00e-41	161.00
IUUC-Ppe-101812	Prunus persica	56.91	5.00e-167	580.00
IUUC-Pva-102462	Pteropus vampyrus	32.19	9.00e-65	240.00
IUUC-Rno-105351	Rattus norvegicus	35.02	3.00e-90	325.00
IUUC-Sha-107491	Sarcophilus harrisii	36.33	1.00e-92	333.00
IUUC-Sja-107769	Schizosaccharomyces japonicus	28.55	2.00e-55	209.00
IUUC-Smo-108805	Selaginella moellendorffii	54.12	7.00e-152	530.00
IUUC-Sit-110361	Setaria italica	71.99	0.00e+00	775.00
IUUC-Sly-110965	Solanum lycopersicum	55.76	1.00e-169	588.00
IUUC-Sbi-114778	Sorghum bicolor	75.59	0.00e+00	768.00
IUUC-Ssc-116273	Sus scrofa	36.09	1.00e-91	329.00
IUUC-Tgu-117063	Taeniopygia guttata	36.23	8.00e-91	327.00
IUUC-Tru-118381	Takifugu rubripes	35.85	8.00e-86	310.00
IUUC-Tsy-119076	Tarsius syrichta	35.55	2.00e-30	126.00
IUUC-Tni-119941	Tetraodon nigroviridis	35.79	3.00e-82	298.00
IUUC-Tca-121246	Theobroma cacao	58.80	6.00e-174	603.00
IUUC-Tae-125484	Triticum aestivum	68.07	0.00e+00	702.00
IUUC-Tur-126128	Triticum urartu	70.04	3.00e-103	368.00
IUUC-Tbe-128030	Tupaia belangeri	33.69	3.00e-52	199.00
IUUC-Ttr-128701	Tursiops truncatus	35.45	7.00e-63	233.00
IUUC-Vvi-131037	Vitis vinifera	57.95	5.00e-172	596.00
IUUC-Xtr-132235	Xenopus tropicalis	36.53	2.00e-94	338.00
IUUC-Xma-133840	Xiphophorus maculatus	35.54	1.00e-86	313.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence