iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Zma-135253

Ensembl Protein ID

Zm00001d013441_T003

UniProt Accession

A0A1D6GJB2; A0A1D6GJB2_MAIZE

Genbank Protein ID

AQK63492.1

Protein Name

Coatomer subunit alpha-1

Genbank Nucleotide ID

CM000781

Gene Name

ZEAMMB73_Zm00001d013441

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d013441	Zm00001d013441_T003	Zm00001d013441_T003

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.50e-40	136.7	50	86
UBD/Beta-Prp	8.00e-78	263.6	3	323

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sdtllvsGsdDgtikvWDlrtgvll 36
           H ++v++++f  + +l+vsG+dD +ikvW+++t+++l
   Q: 50   HDGPVRGVHFhaTQPLFVSGGDDYKIKVWNYKTHRCL 86
           99*********6449********************98 PP

UBD/Beta-Prp

   S: 4    tlkghhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkgh 93
           t +++++++++ + f+p +++++++  +g i+ wd+++g+ll ++ +h+++v+ v f+ +++++v+g++D+ ikvw+++t  c+ tl+gh
   Q: 3    TKFETKSNRVKGLSFHPRRPWILASLHSGVIQMWDYRMGTLLDRFDEHDGPVRGVHFHATQPLFVSGGDDYKIKVWNYKTHRCLFTLHGH 92
           67889999********************************************************************************** PP
   S: 94   edsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdl................. 166
            d++++++f+ +  ++vs+s+d+tir+w++++++c+  +l+gh++ v+c+++hp+++l+vs+slD+tvr+Wd+                 
   Q: 93   LDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCVA-VLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIgalrkktvspaddilrl 181
           *************************************.*************************************************977 PP
   S: 167  ..........ktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgec..vrtlnghtdnvksvrfspnderlvsgssDg 244
                       + + + l+g h++ v++ sf+++ + +vsg++d++vklw +  ++   v+tl+gh +nv++v f+ +++++vs s+D+
   Q: 182  tqmntdlfggVDAVVKYVLEG-HDRGVNWASFHPTLPLIVSGADDRQVKLWRMNDTKAweVDTLRGHVNNVSCVMFHAKQDIIVSNSEDK 270
           777777776444444444466.********************************777668****************************** PP
   S: 245  siriWdlrsgdllktlqlhnssvisvavlsfgdnvlvlgsedskvniwklkknep 299
           siriWd ++++ ++t+ +++++++  a+ +++ n l++g  ds   ++kl++++p
   Q: 271  SIRIWDATKRTGIQTFRREHDRFWILAA-HPEMNLLAAG-HDSGMIVFKLERERP 323
           ****************************.6666655555.689999999988765 PP

Organism

Zea mays

Protein Sequence
(Fasta)

MLTKFETKSN RVKGLSFHPR RPWILASLHS GVIQMWDYRM GTLLDRFDEH DGPVRGVHFH 60
ATQPLFVSGG DDYKIKVWNY KTHRCLFTLH GHLDYIRTVQ FHHEYPWIVS ASDDQTIRIW 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCGCGGGGGT CCCGAGTCCC GACTCGCCCC TCCAGATCCA CCACCACCAC CTCTTCTCCT 60
CCAGATCCAC CACCCCATCC TCTCCGCAGC TACAGCCAGG TGGAGCTCGG CTTAGCCGTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR006692--Coatomer_WD-assoc_reg
IPR020472--G-protein_beta_WD-40_rep
IPR011044--Quino_amine_DH_bsu
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04053--Coatomer_WDAD
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0030117--C:membrane coat
GO:0005198--F:structural molecule activity
GO:0006886--P:intracellular protein transport
GO:0016192--P:vesicle-mediated transport

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aca-005154	Anolis carolinensis	77.03	6.00e-95	339.00
IUUC-Dor-030290	Dipodomys ordii	52.64	1.00e-164	573.00
IUUC-Meu-056238	Macropus eugenii	56.21	0.00e+00	770.00
IUUC-Nle-069634	Nomascus leucogenys	65.27	0.00e+00	943.00
IUUC-Ome-081993	Oryza meridionalis	95.70	0.00e+00	1504.00
IUUC-Pca-100413	Procavia capensis	60.07	0.00e+00	690.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence