iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
microRNA	TRANSFAC	RAID2
Protein-protein Interaction
IID	HINT
Post-translational Modifications (PTMs)
CPLM
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 adaptor/Cullin RING/SCF/F-box	92.06	0.00e+00	761.00	IUUC-Hsa-046995

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MEPAGGGSSS TDPRGTYVLS NLAEVVERVF TFLPAKALLR VAGVCRLWRE CVRRVLRTHR 60
SVTWISAGVA EAGHLEGHCL VRVVAEALEN VRILPRTVLY MADSETFISL EECRGHKRAR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGTTGTCGGT GGTGCGCTGG CCGCTCCGGT GCCTCTGAGC CTCCGTAGGG CTTTCGGGCC 60
GGTAGACGAG GAATGGAGCC AGCAGGCGGC GGCTCCTCCT CCACAGATCC GCGAGGCACC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome

Interpro

IPR001810--F-box_dom
IPR019494--FIST_C

Pfam

PF00646--F-box
PF10442--FIST_C

SMART

SM01204--FIST_C

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0009267--P:cellular response to starvation
GO:0006913--P:nucleocytoplasmic transport
GO:0032436--P:positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:2000060--P:positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0000209--P:protein polyubiquitination
GO:0048742--P:regulation of skeletal muscle fiber development

KEGG

rno:300724

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001386	Ailuropoda melanoleuca	91.05	0.00e+00	746.00
IUUC-Atr-002780	Amborella trichopoda	50.00	6.00e-07	49.30
IUUC-Apl-004192	Anas platyrhynchos	67.09	5.00e-126	443.00
IUUC-Aca-004748	Anolis carolinensis	88.89	5.00e-17	78.60
IUUC-Aor-010231	Aspergillus oryzae	19.84	1.10e-01	31.60
IUUC-Ame-010876	Astyanax mexicanus	51.88	4.00e-64	237.00
IUUC-Bta-013288	Bos taurus	88.92	0.00e+00	717.00
IUUC-Bol-016158	Brassica oleracea	24.69	2.20e-02	34.70
IUUC-Bra-017851	Brassica rapa	38.46	3.00e-02	33.10
IUUC-Cja-019337	Callithrix jacchus	92.51	0.00e+00	745.00
IUUC-Cfa-020236	Canis familiaris	86.28	0.00e+00	721.00
IUUC-Cpo-021841	Cavia porcellus	82.13	6.00e-177	613.00
IUUC-Cre-022684	Chlamydomonas reinhardtii	41.86	1.10e-01	31.20
IUUC-Csa-023548	Chlorocebus sabaeus	86.49	0.00e+00	741.00
IUUC-Cho-024526	Choloepus hoffmanni	81.73	8.00e-171	592.00
IUUC-Dre-028434	Danio rerio	49.87	8.00e-100	357.00
IUUC-Dno-030026	Dasypus novemcinctus	89.88	0.00e+00	745.00
IUUC-Ete-032223	Echinops telfairi	87.68	8.00e-72	264.00
IUUC-Eca-033274	Equus caballus	91.01	0.00e+00	679.00
IUUC-Eeu-035160	Erinaceus europaeus	65.32	5.00e-90	324.00
IUUC-Fca-036405	Felis catus	91.75	0.00e+00	745.00
IUUC-Fal-037025	Ficedula albicollis	66.15	7.00e-153	533.00
IUUC-Gmo-038877	Gadus morhua	49.75	5.00e-106	377.00
IUUC-Gga-041274	Gallus gallus	65.37	1.00e-149	522.00
IUUC-Gac-042032	Gasterosteus aculeatus	50.00	4.00e-107	381.00
IUUC-Gma-044381	Glycine max	41.86	3.00e-04	40.00
IUUC-Ggo-045390	Gorilla gorilla	93.61	0.00e+00	757.00
IUUC-Hsa-046995	Homo sapiens	92.06	0.00e+00	761.00
IUUC-Hvu-047063	Hordeum vulgare	28.57	5.00e-03	35.80
IUUC-Itr-048696	Ictidomys tridecemlineatus	92.33	0.00e+00	771.00
IUUC-Lch-049717	Latimeria chalumnae	57.11	2.00e-126	445.00
IUUC-Lpe-051707	Leersia perrieri	57.69	2.00e-03	36.60
IUUC-Loc-052463	Lepisosteus oculatus	55.41	2.00e-122	432.00
IUUC-Laf-054467	Loxodonta africana	91.07	0.00e+00	743.00
IUUC-Mcc-055596	Macaca mulatta	93.40	5.00e-178	617.00
IUUC-Mpo-057515	Magnaporthe poae	40.00	1.00e-01	28.90
IUUC-Mtr-058238	Medicago truncatula	30.77	4.00e-04	39.70
IUUC-Mga-059974	Meleagris gallopavo	66.67	1.00e-124	438.00
IUUC-Mmr-061349	Microcebus murinus	91.09	0.00e+00	759.00
IUUC-Mdo-062898	Monodelphis domestica	67.24	5.00e-159	553.00
IUUC-Mmu-063154	Mus musculus	97.01	0.00e+00	800.00
IUUC-Mpu-066283	Mustela putorius furo	90.03	0.00e+00	739.00
IUUC-Mlu-067324	Myotis lucifugus	78.93	2.00e-136	478.00
IUUC-Nle-069629	Nomascus leucogenys	93.86	0.00e+00	759.00
IUUC-Opr-071177	Ochotona princeps	85.97	0.00e+00	669.00
IUUC-Ont-072531	Oreochromis niloticus	49.62	1.00e-108	386.00
IUUC-Oan-072774	Ornithorhynchus anatinus	64.95	1.00e-112	399.00
IUUC-Ocu-074384	Oryctolagus cuniculus	83.80	0.00e+00	633.00
IUUC-Oba-075218	Oryza barthii	33.85	7.00e-03	37.40
IUUC-Olo-080717	Oryza longistaminata	35.00	7.80e-02	32.70
IUUC-Ome-081396	Oryza meridionalis	34.48	1.60e-01	30.80
IUUC-Oni-082080	Oryza nivara	33.85	7.00e-03	37.40
IUUC-Oru-084957	Oryza rufipogon	33.85	2.00e-03	38.10
IUUC-Ola-086930	Oryzias latipes	50.26	4.00e-106	377.00
IUUC-Oga-087924	Otolemur garnettii	90.10	0.00e+00	759.00
IUUC-Oar-089765	Ovis aries	87.63	0.00e+00	708.00
IUUC-Ptr-090695	Pan troglodytes	92.06	0.00e+00	759.00
IUUC-Pan-092209	Papio anubis	92.08	0.00e+00	765.00
IUUC-Psi-093751	Pelodiscus sinensis	65.73	2.00e-151	528.00
IUUC-Pno-094803	Phaeosphaeria nodorum	42.22	1.00e-02	34.30
IUUC-Ppa-095563	Physcomitrella patens	51.85	2.00e-03	36.60
IUUC-Pfo-097170	Poecilia formosa	50.26	5.00e-108	384.00
IUUC-Pab-098587	Pongo abelii	93.61	0.00e+00	757.00
IUUC-Pop-099427	Populus trichocarpa	37.11	1.00e-06	48.10
IUUC-Pca-100536	Procavia capensis	78.39	1.00e-145	508.00
IUUC-Ppe-101327	Prunus persica	52.27	1.00e-06	47.80
IUUC-Pva-102535	Pteropus vampyrus	86.74	0.00e+00	645.00
IUUC-Sha-106865	Sarcophilus harrisii	63.18	4.00e-144	504.00
IUUC-Sly-111465	Solanum lycopersicum	36.36	3.00e-04	40.00
IUUC-Stu-112413	Solanum tuberosum	47.73	1.00e-04	41.60
IUUC-Sar-113081	Sorex araneus	89.68	1.00e-167	581.00
IUUC-Ssc-115861	Sus scrofa	86.18	7.00e-110	389.00
IUUC-Tgu-117324	Taeniopygia guttata	66.41	1.00e-151	529.00
IUUC-Tru-118740	Takifugu rubripes	47.83	2.00e-96	345.00
IUUC-Tsy-118948	Tarsius syrichta	92.97	0.00e+00	736.00
IUUC-Tni-120182	Tetraodon nigroviridis	46.70	5.00e-96	344.00
IUUC-Tca-121806	Theobroma cacao	37.84	3.00e-06	47.00
IUUC-Tbe-127382	Tupaia belangeri	82.31	0.00e+00	625.00
IUUC-Ttr-128894	Tursiops truncatus	91.19	6.00e-104	370.00
IUUC-Vpa-130065	Vicugna pacos	90.58	2.00e-73	269.00
IUUC-Vvi-130950	Vitis vinifera	28.57	2.00e-04	40.40
IUUC-Xtr-131922	Xenopus tropicalis	52.21	6.00e-110	390.00
IUUC-Xma-133163	Xiphophorus maculatus	49.61	7.00e-108	384.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence