iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Kpa-049338

Ensembl Protein ID

CAY68034

UniProt Accession

C4QXR1; C4QXR1_KOMPG

Genbank Protein ID

CAY68034.1

Protein Name

WD40 repeat-containing subunit of the Set3C histone deacetylase complex

Genbank Nucleotide ID

FN392319

Gene Name

PAS_chr1-4_0201

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PAS_chr1-4_0201	CAY68034	CAY68034

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.00e-25	85.9	335	382

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.........sdtl.....lvsGsdDgtikvWDlrtgvl 35
           gHt ++ +l++         +d l     l+s s Dg+i+vWD+ +g+ 
   Q: 335  GHTQPILSLDWlptnekfknPD-LsklviLISTSMDGSIRVWDVYKGDT 382
           8***********9877777644.1445669*************988875 PP

Organism

Komagataella pastoris

Protein Sequence
(Fasta)

MTLTSQEVNY LIWRYFQEVG LELSAYALDD ETKIHELDEL YKNKIPIGSL VNFIQKGILY 60
TMKEGEVLES KSSLHEFAKE LNLLSSIKHT NTEIVPPSTN TTDNNSCFTR VLKSLFTYPS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGACTCTAA CCAGCCAGGA GGTTAACTAT CTAATATGGC GATATTTCCA AGAGGTTGGG 60
TTAGAGCTTT CGGCCTATGC CCTTGATGAT GAGACGAAAA TTCACGAATT GGATGAATTA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR006594--LisH
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08513--LisH
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00667--LisH
SM00320--WD40

KEGG

ppa:PAS_chr1-4_0201

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001450	Ailuropoda melanoleuca	28.25	6.00e-33	133.00
IUUC-Atr-002514	Amborella trichopoda	28.91	3.00e-31	127.00
IUUC-Apl-003232	Anas platyrhynchos	28.25	5.00e-33	133.00
IUUC-Aca-004611	Anolis carolinensis	26.30	6.00e-29	119.00
IUUC-Ath-007137	Arabidopsis thaliana	28.91	1.00e-28	119.00
IUUC-Ago-007869	Ashbya gossypii	34.00	5.00e-85	306.00
IUUC-Ame-011601	Astyanax mexicanus	25.65	8.00e-28	115.00
IUUC-Bta-012418	Bos taurus	27.60	4.00e-33	133.00
IUUC-Bdi-014315	Brachypodium distachyon	29.30	4.00e-32	130.00
IUUC-Cja-018832	Callithrix jacchus	26.30	8.00e-29	119.00
IUUC-Cfa-020029	Canis familiaris	26.30	7.00e-29	119.00
IUUC-Cpo-021682	Cavia porcellus	28.25	4.00e-33	133.00
IUUC-Cre-022979	Chlamydomonas reinhardtii	27.11	4.00e-26	110.00
IUUC-Csa-024075	Chlorocebus sabaeus	26.30	7.00e-29	119.00
IUUC-Cin-025704	Ciona intestinalis	29.64	5.00e-31	126.00
IUUC-Csv-026257	Ciona savignyi	29.20	8.00e-32	129.00
IUUC-Cme-027258	Cyanidioschyzon merolae	26.09	1.00e-24	105.00
IUUC-Dre-027586	Danio rerio	28.20	3.00e-33	134.00
IUUC-Dno-029196	Dasypus novemcinctus	26.30	7.00e-29	119.00
IUUC-Dor-030732	Dipodomys ordii	26.30	8.00e-29	119.00
IUUC-Dme-031939	Drosophila melanogaster	27.04	2.00e-30	125.00
IUUC-Ete-033150	Echinops telfairi	27.34	3.00e-28	117.00
IUUC-Eca-033897	Equus caballus	28.25	5.00e-33	133.00
IUUC-Eeu-034952	Erinaceus europaeus	27.05	1.00e-26	112.00
IUUC-Fca-035734	Felis catus	26.30	7.00e-29	119.00
IUUC-Gmo-038870	Gadus morhua	29.69	8.00e-31	126.00
IUUC-Gac-041770	Gasterosteus aculeatus	25.36	1.00e-37	148.00
IUUC-Gma-044208	Glycine max	27.78	4.00e-32	130.00
IUUC-Ggo-044882	Gorilla gorilla	26.30	7.00e-29	119.00
IUUC-Hsa-046488	Homo sapiens	26.30	7.00e-29	119.00
IUUC-Itr-047958	Ictidomys tridecemlineatus	26.30	8.00e-29	118.00
IUUC-Lch-050672	Latimeria chalumnae	26.30	7.00e-29	119.00
IUUC-Loc-052030	Lepisosteus oculatus	27.60	2.00e-32	131.00
IUUC-Laf-054280	Loxodonta africana	27.60	1.00e-32	132.00
IUUC-Mcc-055203	Macaca mulatta	26.30	9.00e-29	119.00
IUUC-Meu-056563	Macropus eugenii	26.78	2.00e-25	107.00
IUUC-Mtr-058624	Medicago truncatula	29.30	4.00e-30	124.00
IUUC-Mmr-060925	Microcebus murinus	26.30	9.00e-29	119.00
IUUC-Mdo-062200	Monodelphis domestica	25.97	1.00e-28	118.00
IUUC-Mmu-063603	Mus musculus	26.30	7.00e-29	119.00
IUUC-Mpu-066741	Mustela putorius furo	26.30	7.00e-29	119.00
IUUC-Mlu-067852	Myotis lucifugus	28.57	2.00e-33	134.00
IUUC-Nle-069229	Nomascus leucogenys	26.30	7.00e-29	119.00
IUUC-Ont-071569	Oreochromis niloticus	29.30	1.00e-32	132.00
IUUC-Oan-073562	Ornithorhynchus anatinus	27.92	1.00e-32	132.00
IUUC-Ocu-074280	Oryctolagus cuniculus	26.30	6.00e-29	119.00
IUUC-Oba-075618	Oryza barthii	26.95	7.00e-27	113.00
IUUC-Ogl-077302	Oryza glaberrima	28.12	2.00e-31	128.00
IUUC-Ogu-078718	Oryza glumaepatula	28.12	1.00e-31	128.00
IUUC-Oin-079515	Oryza indica	26.86	6.00e-17	80.90
IUUC-Olo-080427	Oryza longistaminata	28.12	4.00e-31	127.00
IUUC-Ome-081696	Oryza meridionalis	28.52	3.00e-29	121.00
IUUC-Oni-082137	Oryza nivara	28.12	1.00e-31	128.00
IUUC-Opu-083505	Oryza punctata	27.34	2.00e-27	114.00
IUUC-Oru-085276	Oryza rufipogon	28.52	6.00e-32	130.00
IUUC-Osa-085791	Oryza sativa	28.12	1.00e-31	128.00
IUUC-Ola-087365	Oryzias latipes	27.60	7.00e-32	129.00
IUUC-Olu-087589	Ostreococcus lucimarinus	24.69	1.00e-37	148.00
IUUC-Oga-088365	Otolemur garnettii	29.67	2.00e-30	125.00
IUUC-Oar-089506	Ovis aries	25.94	2.00e-40	157.00
IUUC-Ptr-091532	Pan troglodytes	26.30	7.00e-29	119.00
IUUC-Pan-091927	Papio anubis	26.30	7.00e-29	119.00
IUUC-Psi-093941	Pelodiscus sinensis	26.30	2.00e-28	118.00
IUUC-Ppa-095868	Physcomitrella patens	29.50	1.00e-32	132.00
IUUC-Pfo-097214	Poecilia formosa	27.60	5.00e-30	123.00
IUUC-Pab-098705	Pongo abelii	26.30	7.00e-29	119.00
IUUC-Pca-100256	Procavia capensis	26.30	7.00e-29	119.00
IUUC-Ppe-101572	Prunus persica	28.91	4.00e-32	130.00
IUUC-Pva-102616	Pteropus vampyrus	26.30	6.00e-29	119.00
IUUC-Rno-105411	Rattus norvegicus	26.30	7.00e-29	119.00
IUUC-Sce-106132	Saccharomyces cerevisiae	32.85	3.00e-71	260.00
IUUC-Sja-107844	Schizosaccharomyces japonicus	23.26	4.00e-22	97.10
IUUC-Spo-108242	Schizosaccharomyces pombe	20.77	1.00e-16	79.30
IUUC-Smo-109301	Selaginella moellendorffii	28.35	9.00e-31	125.00
IUUC-Sly-111042	Solanum lycopersicum	28.85	8.00e-33	132.00
IUUC-Stu-112786	Solanum tuberosum	28.02	4.00e-30	123.00
IUUC-Sar-112971	Sorex araneus	25.78	1.00e-25	108.00
IUUC-Sbi-114420	Sorghum bicolor	29.30	2.00e-32	131.00
IUUC-Ssc-115695	Sus scrofa	26.30	7.00e-29	119.00
IUUC-Tgu-117009	Taeniopygia guttata	25.97	2.00e-28	117.00
IUUC-Tru-117862	Takifugu rubripes	28.91	1.00e-32	132.00
IUUC-Tni-119656	Tetraodon nigroviridis	28.91	1.00e-32	132.00
IUUC-Tae-125368	Triticum aestivum	29.69	1.00e-32	132.00
IUUC-Tme-127126	Tuber melanosporum	27.12	5.00e-27	113.00
IUUC-Tbe-127767	Tupaia belangeri	28.52	8.00e-32	128.00
IUUC-Ttr-128826	Tursiops truncatus	28.24	1.00e-32	132.00
IUUC-Vpa-130768	Vicugna pacos	26.30	6.00e-29	119.00
IUUC-Vvi-131193	Vitis vinifera	28.90	3.00e-31	127.00
IUUC-Xtr-132842	Xenopus tropicalis	26.95	6.00e-28	116.00
IUUC-Xma-134168	Xiphophorus maculatus	29.69	2.00e-32	131.00
IUUC-Yli-134648	Yarrowia lipolytica	29.86	5.00e-37	147.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence