iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSRNOG00000005874.7	ENSRNOT00000084006.1	ENSRNOP00000071657.1
ENSRNOG00000005874.7	ENSRNOT00000061279.2	ENSRNOP00000057991.2

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
microRNA	RAID2
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.60e-23	82.2	540	578

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclafsd..tllvsGsdDgtikvWDlrtgvllk 37
           gHtd+ +c++ sd  t+l++G+ D+t+++WDlr+g++l+
   Q: 540  GHTDGASCIDISDygTRLWTGGLDNTVRCWDLREGRQLQ 578
           8**********6668*********************998 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MYPQGRHPTP LQSGQPFKFS VLEICDRIKE EFQFLQAQYH SLKLECEKLA SEKTEMQRHY 60
VMYYEMSYGL NIEMHKQAEI VKRLSAICAQ MVPFLTQEHQ QQVLQAVDRA KQVTVGELNN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCAGCGCCGA CCCCGGGCGG CGGCCACGGA CCTGCGGCGC TGACTGCAGC TGCCCCTGGG 60
CTGGACAACC CGGGACGCGC TGGCTGGAGG TGGGGGCGCA GCACAGGGTC CTGTTCCCCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR005617--Groucho/TLE_N
IPR009146--Groucho_enhance
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF03920--TLE_N
PF00400--WD40

PRINTS

PR01850--GROUCHOFAMLY

SMART

SM00320--WD40

Gene Ontology

GO:0005925--C:focal adhesion
GO:0016604--C:nuclear body
GO:0006355--P:regulation of transcription, DNA-templated

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Bta-013343	Bos taurus	83.00	0.00e+00	996.00
IUUC-Cja-018857	Callithrix jacchus	80.92	0.00e+00	975.00
IUUC-Cfa-021227	Canis familiaris	82.78	0.00e+00	979.00
IUUC-Cpo-021907	Cavia porcellus	79.66	0.00e+00	844.00
IUUC-Csa-023394	Chlorocebus sabaeus	74.30	0.00e+00	994.00
IUUC-Dno-029791	Dasypus novemcinctus	81.78	0.00e+00	850.00
IUUC-Ete-032720	Echinops telfairi	69.49	0.00e+00	849.00
IUUC-Eca-033329	Equus caballus	83.40	0.00e+00	1021.00
IUUC-Hsa-046801	Homo sapiens	84.99	0.00e+00	1115.00
IUUC-Itr-048745	Ictidomys tridecemlineatus	83.05	0.00e+00	867.00
IUUC-Laf-053750	Loxodonta africana	80.78	0.00e+00	1081.00
IUUC-Mcc-055481	Macaca mulatta	85.25	0.00e+00	1121.00
IUUC-Mmr-061248	Microcebus murinus	84.58	0.00e+00	1132.00
IUUC-Mmu-064041	Mus musculus	88.01	0.00e+00	1117.00
IUUC-Mlu-068206	Myotis lucifugus	74.12	0.00e+00	990.00
IUUC-Oga-089089	Otolemur garnettii	80.74	0.00e+00	1118.00
IUUC-Oar-089937	Ovis aries	77.35	0.00e+00	956.00
IUUC-Ptr-090844	Pan troglodytes	79.09	0.00e+00	971.00
IUUC-Pan-091708	Papio anubis	85.25	0.00e+00	1121.00
IUUC-Psi-094070	Pelodiscus sinensis	62.22	0.00e+00	812.00
IUUC-Pab-097877	Pongo abelii	79.10	0.00e+00	974.00
IUUC-Pca-100236	Procavia capensis	81.66	0.00e+00	1068.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence