iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ggr-039863

Ensembl Protein ID

GGTG_06769T0

UniProt Accession

J3NZS2; J3NZS2_GAGT3

Genbank Protein ID

EJT76855.1

Protein Name

Coatomer subunit beta'

Genbank Nucleotide ID

ADBI01000579

Gene Name

GGTG_06769

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
GGTG_06769	GGTG_06769T0	GGTG_06769T0

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	9.20e-31	104.2	186	219
UBD/Beta-Prp	3.50e-65	219.6	13	300

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 5    svtclaf...sd.tllvsGsdDgtikvWDlrtgv 34
           +v+ +++   sd ++l++ sdD t+k+WD++t  
   Q: 186  GVNHVDYyphSDkPYLLTTSDDRTVKIWDYTTKS 219
           6899998899999****************99876 PP

UBD/Beta-Prp

   S: 10   ksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsg 106
           +++++ ++f+p++++++t+ ++g + +w+++t++ +++++  + +v+a +f  +++++v gs+D  ++v++++t++ + ++++h d++++++++p++
   Q: 13   SERVKGIDFHPQEPWILTTLYSGHVYIWSYETQQIVKTFELTDVPVRAGRFVARKNWIVCGSDDFQLRVYNYNTSEKITSFEAHPDYIRAIAVHPTQ 109
           678999******************************************************************************************* PP
   S: 107  dklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsng..kelvsgsl 200
            +++++s+d ti++wd+++ ++  ++++gh++ v++++++p++ n ++s++lDrtv++W+l + +   tl+   t+ v+++++ + +  ++l++ s+
   Q: 110  PFVLTASDDMTIKLWDWDKAWKCVQVFEGHSHYVMGLAINPKDtNTFASACLDRTVKIWNLGSSTANFTLEAHETKGVNHVDYYPHSdkPYLLTTSD 206
           ********************98888***********************************************99********8887777******** PP
   S: 201  dgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlvlgsedskvniwklkk 296
           d+tvk+wd+ t++ + tl+ght+nv+    +p+   ++sgs+Dg+iriW   +  + ++l++  ++ ++v++   +++  v++++d+ + + kl +
   Q: 207  DRTVKIWDYTTKSLIATLEGHTNNVSFACYHPELPVIISGSEDGTIRIWHANTYRFEQSLNYGLERAWCVSY--QKGKQGVAVGFDDGAVVVKLGR 300
           ***********************************************************************9..6677777777766666667665 PP

Organism

Gaeumannomyces graminis

Functional Description
(View)

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Protein Sequence
(Fasta)

MRLDVKRQLF ARSERVKGID FHPQEPWILT TLYSGHVYIW SYETQQIVKT FELTDVPVRA 60
GRFVARKNWI VCGSDDFQLR VYNYNTSEKI TSFEAHPDYI RAIAVHPTQP FVLTASDDMT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCGGTTAG ACGTTAAGGT GGGCGCACAT TGACCTTTAC TTCCCGGCCC TTGGATGTCT 60
CTGGCTTGTA CGACTGCTGC GAGATATGTG GCCTCTGCGC CCATCGTTCG GCCGATGGCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR006692--Coatomer_WD-assoc_reg
IPR016453--COPB2
IPR020472--G-protein_beta_WD-40_rep
IPR011041--Quinoprot_gluc/sorb_DH
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04053--Coatomer_WDAD
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0030126--C:COPI vesicle coat
GO:0005829--C:cytosol
GO:0000139--C:Golgi membrane
GO:0005634--C:nucleus
GO:0003824--F:catalytic activity
GO:0005198--F:structural molecule activity
GO:0006888--P:ER to Golgi vesicle-mediated transport
GO:0006886--P:intracellular protein transport
GO:0032511--P:late endosome to vacuole transport via multivesicular body sorting pathway
GO:0006890--P:retrograde vesicle-mediated transport, Golgi to ER

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000654	Aegilops tauschii	45.03	0.00e+00	761.00
IUUC-Aml-002154	Ailuropoda melanoleuca	55.36	0.00e+00	962.00
IUUC-Atr-003090	Amborella trichopoda	54.67	0.00e+00	878.00
IUUC-Apl-003976	Anas platyrhynchos	55.92	0.00e+00	963.00
IUUC-Aca-004301	Anolis carolinensis	55.64	0.00e+00	964.00
IUUC-Aly-006508	Arabidopsis lyrata	52.77	0.00e+00	905.00
IUUC-Ath-007635	Arabidopsis thaliana	52.88	0.00e+00	908.00
IUUC-Ago-007914	Ashbya gossypii	50.00	0.00e+00	826.00
IUUC-Acl-008237	Aspergillus clavatus	79.78	0.00e+00	1381.00
IUUC-Afl-008535	Aspergillus flavus	78.70	0.00e+00	1313.00
IUUC-Afu-008845	Aspergillus fumigatus	79.85	0.00e+00	1342.00
IUUC-Ani-009135	Aspergillus nidulans	80.44	0.00e+00	1333.00
IUUC-Ang-009654	Aspergillus niger	84.76	0.00e+00	1205.00
IUUC-Aor-009939	Aspergillus oryzae	79.71	0.00e+00	1390.00
IUUC-Ate-010355	Aspergillus terreus	79.61	0.00e+00	1327.00
IUUC-Ame-010922	Astyanax mexicanus	50.86	0.00e+00	830.00
IUUC-Bgr-012249	Blumeria graminis	83.85	0.00e+00	1393.00
IUUC-Bta-013579	Bos taurus	55.93	0.00e+00	872.00
IUUC-Bci-013866	Botrytis cinerea	86.33	0.00e+00	1399.00
IUUC-Bdi-015046	Brachypodium distachyon	52.70	0.00e+00	902.00
IUUC-Bol-016271	Brassica oleracea	52.88	0.00e+00	917.00
IUUC-Bra-017758	Brassica rapa	52.63	0.00e+00	913.00
IUUC-Cel-018387	Caenorhabditis elegans	51.59	0.00e+00	894.00
IUUC-Cja-019145	Callithrix jacchus	55.49	0.00e+00	963.00
IUUC-Cfa-020564	Canis familiaris	55.36	0.00e+00	962.00
IUUC-Cpo-022201	Cavia porcellus	55.54	0.00e+00	964.00
IUUC-Cre-022938	Chlamydomonas reinhardtii	53.33	0.00e+00	852.00
IUUC-Csa-023383	Chlorocebus sabaeus	59.23	0.00e+00	753.00
IUUC-Cho-024454	Choloepus hoffmanni	52.44	0.00e+00	823.00
IUUC-Cin-025681	Ciona intestinalis	53.94	0.00e+00	888.00
IUUC-Csv-026012	Ciona savignyi	54.92	0.00e+00	878.00
IUUC-Cgl-026649	Colletotrichum gloeosporioides	84.53	0.00e+00	1344.00
IUUC-Cne-026986	Cryptococcus neoformans	58.19	0.00e+00	980.00
IUUC-Cme-027219	Cyanidioschyzon merolae	44.78	0.00e+00	755.00
IUUC-Dre-027846	Danio rerio	55.36	0.00e+00	959.00
IUUC-Dor-030462	Dipodomys ordii	53.97	0.00e+00	781.00
IUUC-Dse-031268	Dothistroma septosporum	78.06	0.00e+00	1310.00
IUUC-Dme-031791	Drosophila melanogaster	54.79	0.00e+00	928.00
IUUC-Ete-033166	Echinops telfairi	52.58	0.00e+00	626.00
IUUC-Eca-034180	Equus caballus	53.73	0.00e+00	920.00
IUUC-Eeu-035086	Erinaceus europaeus	43.30	2.00e-97	348.00
IUUC-Fca-036265	Felis catus	55.36	0.00e+00	961.00
IUUC-Fal-037202	Ficedula albicollis	55.41	0.00e+00	919.00
IUUC-Fox-037711	Fusarium oxysporum	89.54	0.00e+00	1388.00
IUUC-Fso-038268	Fusarium solani	89.18	0.00e+00	1391.00
IUUC-Gmo-039046	Gadus morhua	54.74	0.00e+00	945.00
IUUC-Gga-041112	Gallus gallus	55.67	0.00e+00	966.00
IUUC-Gac-041733	Gasterosteus aculeatus	55.24	0.00e+00	926.00
IUUC-Gma-044333	Glycine max	53.30	0.00e+00	921.00
IUUC-Ggo-044984	Gorilla gorilla	55.54	0.00e+00	962.00
IUUC-Hsa-046698	Homo sapiens	55.49	0.00e+00	962.00
IUUC-Hvu-047669	Hordeum vulgare	61.02	8.00e-142	494.00
IUUC-Itr-048212	Ictidomys tridecemlineatus	55.36	0.00e+00	960.00
IUUC-Kpa-049265	Komagataella pastoris	57.27	0.00e+00	961.00
IUUC-Lch-050473	Latimeria chalumnae	55.04	0.00e+00	952.00
IUUC-Lpe-051579	Leersia perrieri	52.88	0.00e+00	899.00
IUUC-Loc-052675	Lepisosteus oculatus	54.96	0.00e+00	958.00
IUUC-Lma-053218	Leptosphaeria maculans	75.27	0.00e+00	1241.00
IUUC-Laf-053757	Loxodonta africana	55.10	0.00e+00	954.00
IUUC-Mcc-054859	Macaca mulatta	55.49	0.00e+00	963.00
IUUC-Meu-056174	Macropus eugenii	46.06	5.00e-85	307.00
IUUC-Mor-057264	Magnaporthe oryzae	93.17	0.00e+00	1458.00
IUUC-Mpo-057538	Magnaporthe poae	96.69	0.00e+00	1555.00
IUUC-Mtr-058310	Medicago truncatula	52.70	0.00e+00	922.00
IUUC-Mla-058937	Melampsora laricipopulina	56.38	0.00e+00	957.00
IUUC-Mga-059875	Meleagris gallopavo	55.47	0.00e+00	962.00
IUUC-Mvi-060240	Microbotryum violaceum	56.55	0.00e+00	960.00
IUUC-Mmr-061261	Microcebus murinus	55.42	0.00e+00	962.00
IUUC-Mdo-062076	Monodelphis domestica	55.54	0.00e+00	966.00
IUUC-Mmu-063324	Mus musculus	55.30	0.00e+00	961.00
IUUC-Mac-064636	Musa acuminata	51.46	0.00e+00	892.00
IUUC-Mpu-065961	Mustela putorius furo	55.36	0.00e+00	962.00
IUUC-Mlu-067059	Myotis lucifugus	54.80	0.00e+00	949.00
IUUC-Nfi-068277	Neosartorya fischeri	79.90	0.00e+00	1333.00
IUUC-Ncr-068659	Neurospora crassa	84.28	0.00e+00	1405.00
IUUC-Nle-069034	Nomascus leucogenys	55.49	0.00e+00	963.00
IUUC-Opr-070334	Ochotona princeps	56.56	0.00e+00	898.00
IUUC-Ont-071563	Oreochromis niloticus	55.07	0.00e+00	946.00
IUUC-Oan-073416	Ornithorhynchus anatinus	55.61	0.00e+00	922.00
IUUC-Ocu-074522	Oryctolagus cuniculus	55.36	0.00e+00	959.00
IUUC-Oba-075760	Oryza barthii	50.92	0.00e+00	884.00
IUUC-Obr-076163	Oryza brachyantha	53.19	0.00e+00	893.00
IUUC-Ogl-077450	Oryza glaberrima	51.41	0.00e+00	905.00
IUUC-Ogu-078994	Oryza glumaepatula	50.92	0.00e+00	883.00
IUUC-Oin-079856	Oryza indica	53.28	0.00e+00	888.00
IUUC-Olo-080731	Oryza longistaminata	51.39	0.00e+00	869.00
IUUC-Ome-081554	Oryza meridionalis	49.57	0.00e+00	825.00
IUUC-Oni-082324	Oryza nivara	50.92	0.00e+00	883.00
IUUC-Opu-083400	Oryza punctata	50.60	0.00e+00	869.00
IUUC-Oru-084829	Oryza rufipogon	50.92	0.00e+00	884.00
IUUC-Osa-086026	Oryza sativa	51.65	0.00e+00	909.00
IUUC-Ola-087245	Oryzias latipes	54.62	0.00e+00	952.00
IUUC-Olu-087655	Ostreococcus lucimarinus	53.33	0.00e+00	891.00
IUUC-Oga-088163	Otolemur garnettii	53.56	0.00e+00	915.00
IUUC-Oar-089842	Ovis aries	55.30	0.00e+00	961.00
IUUC-Ptr-090501	Pan troglodytes	55.49	0.00e+00	963.00
IUUC-Pan-092011	Papio anubis	55.49	0.00e+00	963.00
IUUC-Psi-093308	Pelodiscus sinensis	55.61	0.00e+00	964.00
IUUC-Pma-094695	Petromyzon marinus	54.64	0.00e+00	885.00
IUUC-Pno-094785	Phaeosphaeria nodorum	76.82	1.00e-138	485.00
IUUC-Ppa-095911	Physcomitrella patens	53.69	0.00e+00	919.00
IUUC-Pfo-096587	Poecilia formosa	55.24	0.00e+00	953.00
IUUC-Pab-097926	Pongo abelii	53.98	0.00e+00	888.00
IUUC-Pop-099634	Populus trichocarpa	53.24	0.00e+00	919.00
IUUC-Pca-100965	Procavia capensis	54.13	0.00e+00	926.00
IUUC-Ppe-101470	Prunus persica	53.49	0.00e+00	922.00
IUUC-Pva-102451	Pteropus vampyrus	53.14	0.00e+00	766.00
IUUC-Pgr-103590	Puccinia graminis	57.65	0.00e+00	969.00
IUUC-Ptt-103868	Puccinia triticina	57.53	0.00e+00	968.00
IUUC-Pte-104274	Pyrenophora teres	77.05	0.00e+00	1275.00
IUUC-Pyt-104794	Pyrenophora triticirepentis	73.29	0.00e+00	1216.00
IUUC-Rno-105979	Rattus norvegicus	47.99	0.00e+00	716.00
IUUC-Sce-106269	Saccharomyces cerevisiae	50.68	0.00e+00	845.00
IUUC-Sha-106905	Sarcophilus harrisii	55.42	0.00e+00	965.00
IUUC-Sja-107838	Schizosaccharomyces japonicus	53.29	0.00e+00	877.00
IUUC-Spo-108299	Schizosaccharomyces pombe	54.22	0.00e+00	911.00
IUUC-Smo-108828	Selaginella moellendorffii	52.33	0.00e+00	912.00
IUUC-Sit-110239	Setaria italica	52.38	0.00e+00	911.00
IUUC-Sly-111775	Solanum lycopersicum	53.72	0.00e+00	913.00
IUUC-Stu-112906	Solanum tuberosum	52.44	0.00e+00	824.00
IUUC-Sar-113472	Sorex araneus	52.73	0.00e+00	702.00
IUUC-Sbi-114052	Sorghum bicolor	53.19	0.00e+00	921.00
IUUC-Sre-115040	Sporisorium reilianum	56.59	0.00e+00	957.00
IUUC-Ssc-115593	Sus scrofa	55.24	0.00e+00	960.00
IUUC-Tgu-117239	Taeniopygia guttata	55.79	0.00e+00	964.00
IUUC-Tru-118025	Takifugu rubripes	54.61	0.00e+00	947.00
IUUC-Tsy-118824	Tarsius syrichta	52.22	0.00e+00	709.00
IUUC-Tni-120142	Tetraodon nigroviridis	54.56	0.00e+00	943.00
IUUC-Tca-121613	Theobroma cacao	53.13	0.00e+00	916.00
IUUC-Tre-122072	Trichoderma reesei	86.78	0.00e+00	1418.00
IUUC-Tvi-122546	Trichoderma virens	87.29	0.00e+00	1429.00
IUUC-Tae-125395	Triticum aestivum	52.26	0.00e+00	905.00
IUUC-Tur-126283	Triticum urartu	45.55	0.00e+00	762.00
IUUC-Tme-127041	Tuber melanosporum	75.68	0.00e+00	1294.00
IUUC-Tbe-127770	Tupaia belangeri	55.17	0.00e+00	805.00
IUUC-Ttr-129294	Tursiops truncatus	55.30	0.00e+00	958.00
IUUC-Uma-129351	Ustilago maydis	55.24	0.00e+00	964.00
IUUC-Vda-129716	Verticillium dahliae	89.68	0.00e+00	1481.00
IUUC-Vpa-130037	Vicugna pacos	45.33	2.00e-107	382.00
IUUC-Vvi-131689	Vitis vinifera	53.74	0.00e+00	917.00
IUUC-Xtr-132633	Xenopus tropicalis	55.67	0.00e+00	956.00
IUUC-Xma-133347	Xiphophorus maculatus	55.11	0.00e+00	951.00
IUUC-Yli-134455	Yarrowia lipolytica	58.89	0.00e+00	952.00
IUUC-Zma-135867	Zea mays	53.69	0.00e+00	923.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence