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Tag Content
UUCD2 ID IUUC-Ppa-095911
UUCD1 version UUC-PhP-00421
Ensembl Protein ID PP1S61_1V6.1
UniProt Accession A9SAN0; A9SAN0_PHYPA
Genbank Protein ID EDQ71681.1
Protein Name Coatomer subunit beta'
Genbank Nucleotide ID DS544950
Gene Name PHYPADRAFT_210315
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
PP1S61_1V6 PP1S61_1V6.1 PP1S61_1V6.1
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 4.40e-33 112.6 184 224
UBD/Beta-Prp 1.60e-68 231.8 13 287
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 2    Htdsvtclaf...sd.tllvsGsdDgtikvWDlrtgvllks 38
           H+ +v+c+++    d ++l++GsdD t kvWD+ t  ++++
   Q: 184  HQKGVNCVEYfsgGDrPYLITGSDDQTAKVWDYQTKSCVQT 224
           9999****96699778*******************999986 PP
   

   UBD/Beta-Prp
   S: 8    hhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfsp 104
           +++++++cv+++p +++++++ ++g++ +w+ ++++l++s++  e +v++ kf+ +++++vtg++D++i+v++++t + v  +++h+d+++s++++p
   Q: 13   QRSDRVKCVDIHPTEPWILAALYTGSVCIWNHQNQTLVKSFEVTELPVRSAKFIFRKQWIVTGADDMFIRVYNYNTMDKVKQFEAHSDYIRSVAVHP 109
           57889******************************************************************************************** PP
   S: 105  sgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvysls..fdsngkelvsg 198
           +  +++s s+d  i++wd+++g+   ++++gh++ v+ v+++p++ n ++s+slDrt+++W+l + +   tl+  h++ v++++     ++++l++g
   Q: 110  TLPYVLSSSDDMLIKLWDWDKGWTCTQIFEGHSHYVMQVTINPKDnNTFASASLDRTIKIWNLGSPEPNFTLEA-HQKGVNCVEyfSGGDRPYLITG 205
           ***********************9999*********************************************98.*********6434455****** PP
   S: 199  sldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvl 280
           s+d+t k+wd+qt++cv+tl+ght nv+ v+f+p+  ++++gs+Dg +riW +++  l +tl++  ++v+ + +++ +++v 
   Q: 206  SDDQTAKVWDYQTKSCVQTLEGHTHNVSAVAFHPDLPIILTGSEDGYVRIWHSTTYRLENTLNYGLERVWTIGYIKGSNRVA 287
           ***********************************************************************99955555444 PP
   
Organism Physcomitrella patens
Functional Description
(View)

Functional Description


     The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
 The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
Protein Sequence
(Fasta)
MPLRLEIKRK LAQRSDRVKC VDIHPTEPWI LAALYTGSVC IWNHQNQTLV KSFEVTELPV 60
RSAKFIFRKQ WIVTGADDMF IRVYNYNTMD KVKQFEAHSD YIRSVAVHPT LPYVLSSSDD 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Ppa-095911|E3,WD_repeat;UBD,Beta-Prp|Physcomitrella patens
Please wait for a moment...
Nucleotide Sequence
(Fasta)
GGCAATCTTG TGTTGATAGT GCAGTGAGTC TAGTGTGTGA GAGTGTGAGT GTGTGTGTGT 60
GTTTTGTGTC ATGCAGGGAG GGGCGTTTGA TCGCTGTTGC TAGGGGTTCC TTGGCCGCGG 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Ppa-095911|E3,WD_repeat;UBD,Beta-Prp|Physcomitrella patens
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
KW-0853--WD repeat
Interpro

IPR006692--Coatomer_WD-assoc_reg
IPR016453--COPB2
IPR020472--G-protein_beta_WD-40_rep
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom
PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF04053--Coatomer_WDAD
PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00320--WD40
Gene Ontology

GO:0030126--C:COPI vesicle coat
GO:0000139--C:Golgi membrane
GO:0005198--F:structural molecule activity
GO:0006888--P:ER to Golgi vesicle-mediated transport
GO:0006891--P:intra-Golgi vesicle-mediated transport
GO:0006886--P:intracellular protein transport
GO:0006890--P:retrograde vesicle-mediated transport, Golgi to ER
KEGG ppp:PHYPADRAFT_210315
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000654 Aegilops tauschii 69.15 0.00e+00 1236.00
IUUC-Aml-002154 Ailuropoda melanoleuca 61.80 0.00e+00 1131.00
IUUC-Atr-003090 Amborella trichopoda 76.53 0.00e+00 1393.00
IUUC-Apl-003976 Anas platyrhynchos 61.98 0.00e+00 1135.00
IUUC-Aca-004301 Anolis carolinensis 62.83 0.00e+00 1132.00
IUUC-Ath-007635 Arabidopsis thaliana 76.21 0.00e+00 1374.00
IUUC-Ame-010922 Astyanax mexicanus 55.91 0.00e+00 981.00
IUUC-Bta-013579 Bos taurus 62.52 0.00e+00 979.00
IUUC-Bci-013866 Botrytis cinerea 53.45 0.00e+00 880.00
IUUC-Bdi-015046 Brachypodium distachyon 73.29 0.00e+00 1365.00
IUUC-Cel-018387 Caenorhabditis elegans 55.49 0.00e+00 1003.00
IUUC-Cja-019145 Callithrix jacchus 61.97 0.00e+00 1134.00
IUUC-Cfa-020564 Canis familiaris 61.85 0.00e+00 1132.00
IUUC-Cpo-022201 Cavia porcellus 61.92 0.00e+00 1135.00
IUUC-Csa-023383 Chlorocebus sabaeus 66.32 0.00e+00 835.00
IUUC-Cho-024454 Choloepus hoffmanni 59.84 0.00e+00 943.00
IUUC-Cin-025681 Ciona intestinalis 60.41 0.00e+00 1028.00
IUUC-Csv-026012 Ciona savignyi 58.93 0.00e+00 1001.00
IUUC-Cne-026986 Cryptococcus neoformans 51.27 0.00e+00 872.00
IUUC-Cme-027219 Cyanidioschyzon merolae 47.61 0.00e+00 877.00
IUUC-Dre-027846 Danio rerio 61.55 0.00e+00 1132.00
IUUC-Dor-030462 Dipodomys ordii 60.06 0.00e+00 852.00
IUUC-Dme-031791 Drosophila melanogaster 58.95 0.00e+00 1022.00
IUUC-Ete-033166 Echinops telfairi 58.57 0.00e+00 694.00
IUUC-Eca-034180 Equus caballus 60.07 0.00e+00 1087.00
IUUC-Eeu-035086 Erinaceus europaeus 49.79 3.00e-131 462.00
IUUC-Fca-036265 Felis catus 61.85 0.00e+00 1132.00
IUUC-Fal-037202 Ficedula albicollis 61.29 0.00e+00 1085.00
IUUC-Gmo-039046 Gadus morhua 62.82 0.00e+00 1120.00
IUUC-Ggr-039863 Gaeumannomyces graminis 53.69 0.00e+00 877.00
IUUC-Gga-041112 Gallus gallus 62.15 0.00e+00 1140.00
IUUC-Gac-041733 Gasterosteus aculeatus 60.78 0.00e+00 1087.00
IUUC-Gma-042910 Glycine max 78.15 0.00e+00 1461.00
IUUC-Ggo-044984 Gorilla gorilla 62.95 0.00e+00 1131.00
IUUC-Hsa-046698 Homo sapiens 62.95 0.00e+00 1131.00
IUUC-Itr-048212 Ictidomys tridecemlineatus 61.80 0.00e+00 1129.00
IUUC-Lch-050473 Latimeria chalumnae 61.96 0.00e+00 1133.00
IUUC-Lpe-051579 Leersia perrieri 77.53 0.00e+00 1357.00
IUUC-Loc-052675 Lepisosteus oculatus 61.96 0.00e+00 1133.00
IUUC-Lma-053218 Leptosphaeria maculans 52.94 0.00e+00 870.00
IUUC-Laf-053757 Loxodonta africana 61.78 0.00e+00 1125.00
IUUC-Mcc-054859 Macaca mulatta 61.97 0.00e+00 1134.00
IUUC-Mpo-057538 Magnaporthe poae 53.44 0.00e+00 887.00
IUUC-Mtr-058618 Medicago truncatula 80.21 0.00e+00 1409.00
IUUC-Mla-058937 Melampsora laricipopulina 52.42 0.00e+00 885.00
IUUC-Mga-059875 Meleagris gallopavo 62.12 0.00e+00 1136.00
IUUC-Mvi-060240 Microbotryum violaceum 51.13 0.00e+00 905.00
IUUC-Mmr-061261 Microcebus murinus 61.85 0.00e+00 1132.00
IUUC-Mdo-062076 Monodelphis domestica 61.91 0.00e+00 1139.00
IUUC-Mmu-063324 Mus musculus 61.85 0.00e+00 1134.00
IUUC-Mac-064636 Musa acuminata 78.80 0.00e+00 1414.00
IUUC-Mpu-065961 Mustela putorius furo 61.85 0.00e+00 1133.00
IUUC-Mlu-067059 Myotis lucifugus 60.56 0.00e+00 1103.00
IUUC-Nle-069034 Nomascus leucogenys 61.97 0.00e+00 1133.00
IUUC-Opr-070334 Ochotona princeps 63.64 0.00e+00 1019.00
IUUC-Ont-071563 Oreochromis niloticus 61.37 0.00e+00 1125.00
IUUC-Oan-073416 Ornithorhynchus anatinus 60.93 0.00e+00 1072.00
IUUC-Ocu-074522 Oryctolagus cuniculus 61.97 0.00e+00 1130.00
IUUC-Oba-075760 Oryza barthii 77.76 0.00e+00 1397.00
IUUC-Obr-076201 Oryza brachyantha 75.14 0.00e+00 1370.00
IUUC-Ogl-077450 Oryza glaberrima 78.57 0.00e+00 1424.00
IUUC-Ogu-078994 Oryza glumaepatula 77.76 0.00e+00 1395.00
IUUC-Oin-079211 Oryza indica 76.73 0.00e+00 1372.00
IUUC-Olo-080731 Oryza longistaminata 76.69 0.00e+00 1374.00
IUUC-Ome-081762 Oryza meridionalis 71.77 0.00e+00 1286.00
IUUC-Oni-082324 Oryza nivara 77.76 0.00e+00 1397.00
IUUC-Opu-083433 Oryza punctata 79.31 0.00e+00 1335.00
IUUC-Oru-084829 Oryza rufipogon 77.76 0.00e+00 1397.00
IUUC-Osa-086026 Oryza sativa 78.69 0.00e+00 1425.00
IUUC-Ola-087245 Oryzias latipes 61.44 0.00e+00 1124.00
IUUC-Olu-087655 Ostreococcus lucimarinus 67.70 0.00e+00 1156.00
IUUC-Oga-088163 Otolemur garnettii 59.36 0.00e+00 1073.00
IUUC-Oar-089842 Ovis aries 61.73 0.00e+00 1131.00
IUUC-Ptr-090501 Pan troglodytes 62.95 0.00e+00 1131.00
IUUC-Pan-092011 Papio anubis 61.97 0.00e+00 1134.00
IUUC-Psi-093308 Pelodiscus sinensis 62.15 0.00e+00 1141.00
IUUC-Pma-094695 Petromyzon marinus 58.26 0.00e+00 997.00
IUUC-Pfo-096587 Poecilia formosa 61.25 0.00e+00 1125.00
IUUC-Pab-097926 Pongo abelii 60.78 0.00e+00 1062.00
IUUC-Pop-099634 Populus trichocarpa 77.92 0.00e+00 1426.00
IUUC-Pca-100965 Procavia capensis 60.97 0.00e+00 1097.00
IUUC-Ppe-101470 Prunus persica 80.33 0.00e+00 1448.00
IUUC-Pva-102451 Pteropus vampyrus 58.56 0.00e+00 837.00
IUUC-Pgr-103453 Puccinia graminis 52.57 0.00e+00 898.00
IUUC-Ptt-103868 Puccinia triticina 52.70 0.00e+00 896.00
IUUC-Pte-104274 Pyrenophora teres 54.10 0.00e+00 904.00
IUUC-Pyt-104794 Pyrenophora triticirepentis 53.64 0.00e+00 857.00
IUUC-Rno-105979 Rattus norvegicus 53.59 0.00e+00 823.00
IUUC-Sha-106905 Sarcophilus harrisii 61.91 0.00e+00 1137.00
IUUC-Smo-108828 Selaginella moellendorffii 81.99 0.00e+00 1398.00
IUUC-Sit-110239 Setaria italica 76.48 0.00e+00 1426.00
IUUC-Sly-111775 Solanum lycopersicum 75.11 0.00e+00 1418.00
IUUC-Stu-112906 Solanum tuberosum 79.53 0.00e+00 1281.00
IUUC-Sar-113472 Sorex araneus 57.19 0.00e+00 750.00
IUUC-Sbi-114052 Sorghum bicolor 82.20 0.00e+00 1394.00
IUUC-Sre-115040 Sporisorium reilianum 51.72 0.00e+00 881.00
IUUC-Ssc-115593 Sus scrofa 61.73 0.00e+00 1130.00
IUUC-Tgu-117239 Taeniopygia guttata 61.98 0.00e+00 1137.00
IUUC-Tru-118025 Takifugu rubripes 61.18 0.00e+00 1123.00
IUUC-Tsy-118824 Tarsius syrichta 58.73 0.00e+00 784.00
IUUC-Tni-120142 Tetraodon nigroviridis 60.85 0.00e+00 1114.00
IUUC-Tca-121613 Theobroma cacao 79.54 0.00e+00 1459.00
IUUC-Tre-122072 Trichoderma reesei 53.19 0.00e+00 895.00
IUUC-Tvi-122546 Trichoderma virens 52.58 0.00e+00 884.00
IUUC-Tae-125395 Triticum aestivum 78.31 0.00e+00 1399.00
IUUC-Tur-126283 Triticum urartu 70.16 0.00e+00 1235.00
IUUC-Tbe-127770 Tupaia belangeri 60.99 0.00e+00 881.00
IUUC-Ttr-129294 Tursiops truncatus 61.73 0.00e+00 1129.00
IUUC-Uma-129351 Ustilago maydis 51.28 0.00e+00 871.00
IUUC-Vpa-130037 Vicugna pacos 50.31 5.00e-133 468.00
IUUC-Vvi-131689 Vitis vinifera 80.56 0.00e+00 1442.00
IUUC-Xtr-132633 Xenopus tropicalis 60.65 0.00e+00 1130.00
IUUC-Xma-133347 Xiphophorus maculatus 61.48 0.00e+00 1128.00
Created Date 25-Jun-2017

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