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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Ath-006669
UUCD1 version UUC-ArT-00950
Ensembl Protein ID AT5G15550.3
UniProt Accession Q9LF27; WDR12_ARATH
Genbank Protein ID CAC01754.1; AED92176.1; ANM71061.1; AAL36367.1; AAM14196.1
Protein Name Ribosome biogenesis protein WDR12 homolog; Pescadillo-interacting protein 2
Genbank Nucleotide ID AL391143; CP002688; CP002688; AY064011; AY091257
Gene Name WDR12; PEIP2; At5g15550; T20K14_160
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT5G15550 AT5G15550.3 AT5G15550.3
AT5G15550 AT5G15550.2 AT5G15550.2
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
Protein-protein Interaction
HINT
Post-translational Modifications (PTMs)
UniProt
Protein Expression/Proteomics
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 1.00e-27 95.8 357 391
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 2    Htdsvtclaf..sd.tllvsGsdDgtikvWDlrtg 33
           H+++++++++  s+  +l+s+s+Dg+i++WDlrt 
   Q: 357  HSSWISACKWhkSSwFHLLSASYDGKIMLWDLRTA 391
           ***********977688***************986 PP
   
Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description


     Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.
 Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.
Protein Sequence
(Fasta)
MDIDGEDVSR RLHVKFVTKL DSPFKVPVNS VAIPSNVTRL GLSSIVNSII ESENPEWKTE 60
PFDFLIDGEL IRMSLEEFLL AKGISAERTL EIEYIRAVTP RKEEEPSLHD DWVSAVNGSS 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Ath-006669|E3,WD_repeat|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CCACACTTCA TCGCCTCAAG GCAGAACCCT AATTTATCTC CGCGTCTTCT TTTTGCTCAG 60
TAACAGGCCA TCGGAGAAGT TAAGAGGCTA AAATGGATAT CGACGGAGAA GATGTATCTA 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Ath-006669|E3,WD_repeat|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0007--Acetylation
KW-0025--Alternative splicing
KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat
Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF08154--NLE
PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00320--WD40
Gene Ontology

GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0009506--C:plasmodesma
GO:0030687--C:preribosome, large subunit precursor
GO:0000460--P:maturation of 5.8S rRNA
GO:0000470--P:maturation of LSU-rRNA
KEGG ath:AT5G15550
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000532 Aegilops tauschii 62.82 3.00e-170 590.00
IUUC-Aml-001997 Ailuropoda melanoleuca 33.81 1.00e-55 209.00
IUUC-Atr-002544 Amborella trichopoda 57.99 1.00e-152 531.00
IUUC-Apl-003981 Anas platyrhynchos 35.07 8.00e-55 206.00
IUUC-Aca-004370 Anolis carolinensis 33.89 2.00e-62 232.00
IUUC-Aly-006455 Arabidopsis lyrata 97.46 0.00e+00 856.00
IUUC-Ago-007864 Ashbya gossypii 31.74 5.00e-49 187.00
IUUC-Acl-008177 Aspergillus clavatus 29.95 8.00e-43 167.00
IUUC-Afl-008617 Aspergillus flavus 29.48 1.00e-40 160.00
IUUC-Afu-008752 Aspergillus fumigatus 29.48 2.00e-40 159.00
IUUC-Ani-009136 Aspergillus nidulans 31.79 5.00e-43 168.00
IUUC-Ang-009701 Aspergillus niger 29.90 3.00e-40 159.00
IUUC-Aor-009884 Aspergillus oryzae 29.25 9.00e-41 160.00
IUUC-Ame-011432 Astyanax mexicanus 33.02 2.00e-62 232.00
IUUC-Bgr-012218 Blumeria graminis 28.87 7.00e-38 150.00
IUUC-Bta-012829 Bos taurus 32.93 4.00e-56 211.00
IUUC-Bci-013953 Botrytis cinerea 27.07 2.00e-39 155.00
IUUC-Bdi-014351 Brachypodium distachyon 62.39 2.00e-160 558.00
IUUC-Bol-016514 Brassica oleracea 84.99 0.00e+00 717.00
IUUC-Bra-016988 Brassica rapa 84.99 0.00e+00 719.00
IUUC-Cel-018569 Caenorhabditis elegans 23.38 2.00e-25 109.00
IUUC-Cja-019468 Callithrix jacchus 33.89 2.00e-54 206.00
IUUC-Cfa-020471 Canis familiaris 32.93 1.00e-53 202.00
IUUC-Cpo-022260 Cavia porcellus 34.62 3.00e-56 211.00
IUUC-Cre-022614 Chlamydomonas reinhardtii 38.27 4.00e-65 241.00
IUUC-Csa-023989 Chlorocebus sabaeus 33.65 2.00e-54 205.00
IUUC-Cho-024426 Choloepus hoffmanni 32.90 9.00e-42 163.00
IUUC-Cin-025789 Ciona intestinalis 27.68 4.00e-49 188.00
IUUC-Cne-027063 Cryptococcus neoformans 28.57 9.00e-30 124.00
IUUC-Dre-027907 Danio rerio 33.49 8.00e-64 236.00
IUUC-Dno-029225 Dasypus novemcinctus 33.17 1.00e-55 209.00
IUUC-Dor-031082 Dipodomys ordii 32.39 3.00e-26 112.00
IUUC-Dse-031308 Dothistroma septosporum 29.98 7.00e-49 187.00
IUUC-Dme-032189 Drosophila melanogaster 30.14 3.00e-48 185.00
IUUC-Ete-032247 Echinops telfairi 31.45 2.00e-48 186.00
IUUC-Eca-034285 Equus caballus 32.93 3.00e-55 208.00
IUUC-Eeu-035322 Erinaceus europaeus 29.93 2.00e-46 178.00
IUUC-Fca-036114 Felis catus 33.17 1.00e-55 209.00
IUUC-Fal-036891 Ficedula albicollis 34.46 4.00e-49 187.00
IUUC-Fox-037965 Fusarium oxysporum 26.36 8.00e-33 134.00
IUUC-Fso-038244 Fusarium solani 27.03 4.00e-34 138.00
IUUC-Gmo-039040 Gadus morhua 34.13 3.00e-64 238.00
IUUC-Ggr-040093 Gaeumannomyces graminis 24.68 3.00e-26 112.00
IUUC-Gga-040610 Gallus gallus 33.74 6.00e-57 214.00
IUUC-Gac-042117 Gasterosteus aculeatus 35.20 4.00e-62 231.00
IUUC-Gma-043967 Glycine max 70.56 0.00e+00 647.00
IUUC-Ggo-045179 Gorilla gorilla 33.65 3.00e-55 208.00
IUUC-Hsa-046114 Homo sapiens 33.65 2.00e-54 206.00
IUUC-Hvu-047331 Hordeum vulgare 64.75 3.00e-152 530.00
IUUC-Itr-048275 Ictidomys tridecemlineatus 33.65 2.00e-56 212.00
IUUC-Kpa-049304 Komagataella pastoris 30.15 3.00e-45 175.00
IUUC-Lch-050655 Latimeria chalumnae 32.45 6.00e-42 163.00
IUUC-Lpe-051675 Leersia perrieri 62.79 4.00e-167 580.00
IUUC-Loc-052868 Lepisosteus oculatus 33.89 1.00e-61 229.00
IUUC-Lma-053258 Leptosphaeria maculans 26.93 5.00e-41 162.00
IUUC-Laf-053993 Loxodonta africana 32.69 3.00e-56 211.00
IUUC-Mcc-055128 Macaca mulatta 27.90 2.00e-33 135.00
IUUC-Meu-056501 Macropus eugenii 34.95 1.00e-48 186.00
IUUC-Mor-057114 Magnaporthe oryzae 25.99 3.00e-37 149.00
IUUC-Mtr-058367 Medicago truncatula 67.60 2.00e-174 604.00
IUUC-Mla-059107 Melampsora laricipopulina 27.16 2.00e-36 146.00
IUUC-Mga-059745 Meleagris gallopavo 33.25 5.00e-56 211.00
IUUC-Mvi-060362 Microbotryum violaceum 25.11 2.00e-29 123.00
IUUC-Mdo-062257 Monodelphis domestica 34.13 4.00e-60 224.00
IUUC-Mmu-063546 Mus musculus 33.17 9.00e-56 210.00
IUUC-Mac-065540 Musa acuminata 63.76 8.00e-167 579.00
IUUC-Mpu-066284 Mustela putorius furo 33.17 5.00e-56 211.00
IUUC-Mlu-067241 Myotis lucifugus 33.41 1.00e-56 212.00
IUUC-Nfi-068260 Neosartorya fischeri 29.71 2.00e-41 162.00
IUUC-Ncr-068719 Neurospora crassa 25.93 6.00e-32 131.00
IUUC-Nle-068981 Nomascus leucogenys 33.41 3.00e-54 204.00
IUUC-Opr-071218 Ochotona princeps 32.42 4.00e-53 201.00
IUUC-Ont-071646 Oreochromis niloticus 33.25 1.00e-56 213.00
IUUC-Oan-073453 Ornithorhynchus anatinus 33.65 4.00e-65 241.00
IUUC-Ocu-074008 Oryctolagus cuniculus 33.65 4.00e-57 214.00
IUUC-Oba-075712 Oryza barthii 52.79 2.00e-129 454.00
IUUC-Obr-076721 Oryza brachyantha 61.19 4.00e-165 573.00
IUUC-Ogl-077229 Oryza glaberrima 62.70 1.00e-167 582.00
IUUC-Ogu-078977 Oryza glumaepatula 52.56 3.00e-129 454.00
IUUC-Oin-079683 Oryza indica 62.24 8.00e-167 579.00
IUUC-Olo-080291 Oryza longistaminata 52.81 7.00e-91 326.00
IUUC-Ome-081834 Oryza meridionalis 63.23 2.00e-167 581.00
IUUC-Oni-082507 Oryza nivara 59.95 2.00e-156 544.00
IUUC-Opu-083396 Oryza punctata 62.56 2.00e-167 581.00
IUUC-Oru-085220 Oryza rufipogon 59.95 1.00e-156 545.00
IUUC-Osa-085767 Oryza sativa 62.24 8.00e-167 579.00
IUUC-Ola-087420 Oryzias latipes 33.99 1.00e-61 229.00
IUUC-Olu-087740 Ostreococcus lucimarinus 33.33 2.00e-61 229.00
IUUC-Oga-088264 Otolemur garnettii 32.69 7.00e-54 204.00
IUUC-Oar-089335 Ovis aries 33.17 9.00e-57 213.00
IUUC-Ptr-091320 Pan troglodytes 33.65 2.00e-54 206.00
IUUC-Pan-092833 Papio anubis 33.89 1.00e-54 206.00
IUUC-Psi-093504 Pelodiscus sinensis 33.74 2.00e-55 208.00
IUUC-Pma-094189 Petromyzon marinus 32.86 2.00e-58 219.00
IUUC-Pno-094929 Phaeosphaeria nodorum 27.75 9.00e-41 160.00
IUUC-Ppa-095429 Physcomitrella patens 50.46 3.00e-124 437.00
IUUC-Pfo-096337 Poecilia formosa 33.81 2.00e-62 232.00
IUUC-Pab-097571 Pongo abelii 33.65 2.00e-54 206.00
IUUC-Pop-099977 Populus trichocarpa 71.76 0.00e+00 665.00
IUUC-Pca-100394 Procavia capensis 31.53 6.00e-48 184.00
IUUC-Ppe-101848 Prunus persica 72.81 0.00e+00 682.00
IUUC-Pva-102921 Pteropus vampyrus 31.58 3.00e-25 108.00
IUUC-Pgr-103637 Puccinia graminis 26.35 2.00e-34 139.00
IUUC-Ptt-103781 Puccinia triticina 25.70 5.00e-34 138.00
IUUC-Pte-104135 Pyrenophora teres 29.10 7.00e-41 162.00
IUUC-Pyt-104609 Pyrenophora triticirepentis 28.51 3.00e-43 168.00
IUUC-Rno-105114 Rattus norvegicus 33.89 6.00e-57 214.00
IUUC-Sce-106401 Saccharomyces cerevisiae 29.18 5.00e-46 177.00
IUUC-Sha-107122 Sarcophilus harrisii 34.84 1.00e-57 216.00
IUUC-Sja-107766 Schizosaccharomyces japonicus 26.79 1.00e-39 156.00
IUUC-Spo-108134 Schizosaccharomyces pombe 29.12 4.00e-37 148.00
IUUC-Ssl-108398 Sclerotinia sclerotiorum 28.04 7.00e-42 164.00
IUUC-Smo-108720 Selaginella moellendorffii 46.28 2.00e-114 404.00
IUUC-Sit-110354 Setaria italica 62.50 2.00e-166 577.00
IUUC-Sly-111023 Solanum lycopersicum 63.83 9.00e-170 588.00
IUUC-Stu-112778 Solanum tuberosum 69.41 9.00e-177 612.00
IUUC-Sar-113596 Sorex araneus 30.49 1.00e-41 162.00
IUUC-Sbi-114193 Sorghum bicolor 61.61 1.00e-156 545.00
IUUC-Sre-115002 Sporisorium reilianum 25.61 9.00e-19 87.80
IUUC-Ssc-116066 Sus scrofa 33.41 4.00e-56 211.00
IUUC-Tgu-117048 Taeniopygia guttata 34.79 6.00e-54 203.00
IUUC-Tni-119820 Tetraodon nigroviridis 35.22 4.00e-61 228.00
IUUC-Tca-121605 Theobroma cacao 75.17 0.00e+00 683.00
IUUC-Tre-121947 Trichoderma reesei 27.03 3.00e-36 145.00
IUUC-Tvi-122481 Trichoderma virens 27.29 6.00e-36 144.00
IUUC-Tae-123504 Triticum aestivum 63.05 9.00e-171 592.00
IUUC-Tur-126586 Triticum urartu 64.50 4.00e-159 553.00
IUUC-Tme-126900 Tuber melanosporum 30.39 2.00e-50 192.00
IUUC-Tbe-127736 Tupaia belangeri 27.38 9.00e-29 120.00
IUUC-Ttr-129041 Tursiops truncatus 28.37 3.00e-39 155.00
IUUC-Vpa-130260 Vicugna pacos 33.41 2.00e-56 212.00
IUUC-Vvi-131009 Vitis vinifera 74.37 0.00e+00 682.00
IUUC-Xtr-132083 Xenopus tropicalis 34.62 4.00e-61 228.00
IUUC-Xma-133094 Xiphophorus maculatus 33.33 6.00e-62 230.00
IUUC-Yli-134531 Yarrowia lipolytica 27.01 2.00e-33 136.00
IUUC-Zma-135509 Zea mays 62.04 8.00e-164 569.00
Created Date 25-Jun-2017

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