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Tag Content
UUCD2 ID IUUC-Cre-022614
UUCD1 version UUC-ChR-00019
Ensembl Protein ID EDP04787
UniProt Accession A8IR43; WDR12_CHLRE
Genbank Protein ID EDP04787.1
Protein Name Ribosome biogenesis protein WDR12 homolog
Genbank Nucleotide ID DS496120
Gene Name CHLREDRAFT_128420
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
CHLREDRAFT_128420 EDP04787 EDP04787
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 1.00e-32 110.3 361 395
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 2    Htdsvtclaf..sd.tllvsGsdDgtikvWDlrtg 33
           H ++vt++a+  s+ ++++s+s+Dgtik+WD+rt+
   Q: 361  HGGWVTAVAWcpSSqHHIASASHDGTIKMWDIRTQ 395
           9**********85579****************997 PP
   
Organism Chlamydomonas reinhardtii
Functional Description
(View)

Functional Description


     Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.
 Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.
Protein Sequence
(Fasta)
MAEETQVLVK FVTKLPAHLR VPETPVAVPS DLKRYGLSQI INHLLALDPP RPFDFLIDGE 60
LVRKSLEQHL LAHNLSAEST LEVEYVPAVV PPQQKNSTPH DDWVSSVDGS RCAPASSSGG 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Cre-022614|E3,WD_repeat|Chlamydomonas reinhardtii
Please wait for a moment...
Nucleotide Sequence
(Fasta)
GAACGACTAA CTTCACTTGC TGAGCGTCAC GCTAAAATTT GCAGCGAGTT GGAAAGCTTC 60
ACTCGCGAAG ATGGCGGAAG AGACTCAGGT TCTTGTGAAG TTTGTAACAA AACTTCCAGC 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Cre-022614|E3,WD_repeat|Chlamydomonas reinhardtii
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat
Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF08154--NLE
PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00320--WD40
Gene Ontology

GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0009506--C:plasmodesma
GO:0030687--C:preribosome, large subunit precursor
GO:0000460--P:maturation of 5.8S rRNA
GO:0000470--P:maturation of LSU-rRNA
KEGG cre:CHLREDRAFT_128420
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000532 Aegilops tauschii 37.97 1.00e-67 248.00
IUUC-Aml-001997 Ailuropoda melanoleuca 31.09 6.00e-41 159.00
IUUC-Atr-002544 Amborella trichopoda 34.25 6.00e-60 223.00
IUUC-Apl-003981 Anas platyrhynchos 30.32 1.00e-38 151.00
IUUC-Aca-004370 Anolis carolinensis 30.89 9.00e-48 182.00
IUUC-Aly-006455 Arabidopsis lyrata 38.27 1.00e-68 251.00
IUUC-Ath-006669 Arabidopsis thaliana 38.27 1.00e-64 238.00
IUUC-Ago-007864 Ashbya gossypii 32.52 3.00e-47 181.00
IUUC-Acl-008177 Aspergillus clavatus 33.82 4.00e-48 184.00
IUUC-Afl-008617 Aspergillus flavus 32.68 6.00e-43 166.00
IUUC-Afu-008752 Aspergillus fumigatus 32.27 6.00e-45 173.00
IUUC-Ani-009136 Aspergillus nidulans 34.03 8.00e-47 179.00
IUUC-Ang-009701 Aspergillus niger 32.66 5.00e-42 163.00
IUUC-Aor-009884 Aspergillus oryzae 32.44 3.00e-42 164.00
IUUC-Ate-010472 Aspergillus terreus 28.52 1.00e-11 62.00
IUUC-Ame-011432 Astyanax mexicanus 32.15 2.00e-50 191.00
IUUC-Bgr-012218 Blumeria graminis 31.88 1.00e-40 159.00
IUUC-Bta-012829 Bos taurus 29.95 4.00e-41 160.00
IUUC-Bci-013953 Botrytis cinerea 31.37 2.00e-43 168.00
IUUC-Bdi-014351 Brachypodium distachyon 38.56 1.00e-65 241.00
IUUC-Bol-016514 Brassica oleracea 38.72 1.00e-66 245.00
IUUC-Bra-016988 Brassica rapa 38.72 9.00e-67 245.00
IUUC-Cel-018569 Caenorhabditis elegans 24.26 1.00e-19 89.00
IUUC-Cja-019468 Callithrix jacchus 31.47 8.00e-40 155.00
IUUC-Cfa-020471 Canis familiaris 30.71 2.00e-41 161.00
IUUC-Cpo-022260 Cavia porcellus 31.47 6.00e-41 159.00
IUUC-Csa-023989 Chlorocebus sabaeus 31.22 1.00e-40 158.00
IUUC-Cho-024426 Choloepus hoffmanni 30.26 4.00e-33 133.00
IUUC-Cin-025789 Ciona intestinalis 27.78 1.00e-38 152.00
IUUC-Cgl-026562 Colletotrichum gloeosporioides 41.03 1.00e-08 51.20
IUUC-Cne-027063 Cryptococcus neoformans 28.47 3.00e-25 107.00
IUUC-Dre-027907 Danio rerio 33.16 1.00e-52 198.00
IUUC-Dno-029225 Dasypus novemcinctus 30.96 5.00e-43 166.00
IUUC-Dor-031082 Dipodomys ordii 28.88 2.00e-17 81.60
IUUC-Dse-031308 Dothistroma septosporum 33.33 5.00e-50 190.00
IUUC-Dme-032189 Drosophila melanogaster 29.10 6.00e-39 153.00
IUUC-Ete-032247 Echinops telfairi 28.43 2.00e-35 141.00
IUUC-Eca-034285 Equus caballus 30.71 6.00e-41 159.00
IUUC-Eeu-035322 Erinaceus europaeus 27.41 1.00e-33 135.00
IUUC-Fca-036114 Felis catus 30.96 6.00e-42 163.00
IUUC-Fal-036891 Ficedula albicollis 30.34 2.00e-32 131.00
IUUC-Fox-037965 Fusarium oxysporum 31.87 9.00e-40 155.00
IUUC-Fso-038244 Fusarium solani 31.33 8.00e-38 149.00
IUUC-Gmo-039040 Gadus morhua 32.66 9.00e-50 189.00
IUUC-Ggr-040093 Gaeumannomyces graminis 30.70 1.00e-32 132.00
IUUC-Gga-040610 Gallus gallus 30.20 6.00e-42 163.00
IUUC-Gac-042117 Gasterosteus aculeatus 32.66 5.00e-48 183.00
IUUC-Gma-043425 Glycine max 38.46 9.00e-68 248.00
IUUC-Ggo-045179 Gorilla gorilla 31.47 1.00e-41 162.00
IUUC-Hsa-046114 Homo sapiens 31.22 8.00e-41 159.00
IUUC-Hvu-047331 Hordeum vulgare 36.56 1.00e-53 202.00
IUUC-Itr-048275 Ictidomys tridecemlineatus 31.22 6.00e-43 166.00
IUUC-Kpa-049304 Komagataella pastoris 31.55 1.00e-48 185.00
IUUC-Lch-050655 Latimeria chalumnae 29.01 3.00e-32 130.00
IUUC-Lpe-051675 Leersia perrieri 39.36 7.00e-69 253.00
IUUC-Loc-052868 Lepisosteus oculatus 31.74 8.00e-48 182.00
IUUC-Lma-053258 Leptosphaeria maculans 30.64 2.00e-41 163.00
IUUC-Laf-053993 Loxodonta africana 29.70 2.00e-40 157.00
IUUC-Mcc-055128 Macaca mulatta 25.29 6.00e-23 99.80
IUUC-Meu-056501 Macropus eugenii 32.16 5.00e-41 159.00
IUUC-Mor-057114 Magnaporthe oryzae 30.92 4.00e-44 170.00
IUUC-Mpo-057463 Magnaporthe poae 43.14 5.00e-26 108.00
IUUC-Mtr-058367 Medicago truncatula 36.87 6.00e-60 223.00
IUUC-Mla-059107 Melampsora laricipopulina 28.24 5.00e-36 143.00
IUUC-Mga-059745 Meleagris gallopavo 30.47 3.00e-41 160.00
IUUC-Mvi-060362 Microbotryum violaceum 40.95 5.00e-20 90.50
IUUC-Mdo-062257 Monodelphis domestica 31.39 1.00e-45 175.00
IUUC-Mmu-063546 Mus musculus 32.98 2.00e-43 168.00
IUUC-Mac-065540 Musa acuminata 38.15 9.00e-65 239.00
IUUC-Mpu-066284 Mustela putorius furo 30.46 2.00e-41 161.00
IUUC-Mlu-067241 Myotis lucifugus 31.08 1.00e-41 162.00
IUUC-Nfi-068260 Neosartorya fischeri 32.36 9.00e-45 172.00
IUUC-Ncr-068719 Neurospora crassa 29.50 8.00e-33 132.00
IUUC-Nle-068981 Nomascus leucogenys 31.47 5.00e-41 160.00
IUUC-Opr-071218 Ochotona princeps 30.20 1.00e-41 162.00
IUUC-Ont-071646 Oreochromis niloticus 32.58 5.00e-46 176.00
IUUC-Oan-073453 Ornithorhynchus anatinus 30.23 2.00e-48 184.00
IUUC-Ocu-074008 Oryctolagus cuniculus 31.22 5.00e-43 166.00
IUUC-Oba-075712 Oryza barthii 33.91 2.00e-55 207.00
IUUC-Obr-076721 Oryza brachyantha 38.46 2.00e-67 248.00
IUUC-Ogl-077229 Oryza glaberrima 39.11 1.00e-69 255.00
IUUC-Ogu-078977 Oryza glumaepatula 33.91 2.00e-55 207.00
IUUC-Oin-079683 Oryza indica 38.86 2.00e-69 254.00
IUUC-Olo-080291 Oryza longistaminata 33.44 3.00e-39 153.00
IUUC-Ome-081834 Oryza meridionalis 38.61 1.00e-68 252.00
IUUC-Oni-082507 Oryza nivara 37.38 5.00e-65 239.00
IUUC-Opu-083396 Oryza punctata 38.86 1.00e-69 254.00
IUUC-Oru-085220 Oryza rufipogon 37.62 8.00e-66 242.00
IUUC-Osa-085767 Oryza sativa 38.86 2.00e-69 254.00
IUUC-Ola-087420 Oryzias latipes 33.42 2.00e-51 194.00
IUUC-Olu-087740 Ostreococcus lucimarinus 34.06 4.00e-51 193.00
IUUC-Oga-088264 Otolemur garnettii 30.71 1.00e-41 162.00
IUUC-Oar-089335 Ovis aries 29.95 5.00e-41 160.00
IUUC-Ptr-091320 Pan troglodytes 31.22 8.00e-41 159.00
IUUC-Pan-092833 Papio anubis 31.47 5.00e-41 160.00
IUUC-Psi-093504 Pelodiscus sinensis 29.95 8.00e-40 155.00
IUUC-Pma-094189 Petromyzon marinus 30.71 1.00e-39 155.00
IUUC-Pno-094929 Phaeosphaeria nodorum 29.98 5.00e-39 153.00
IUUC-Ppa-095429 Physcomitrella patens 36.76 6.00e-71 259.00
IUUC-Pfo-096337 Poecilia formosa 32.24 3.00e-51 194.00
IUUC-Pab-097571 Pongo abelii 30.96 1.00e-40 159.00
IUUC-Pop-099977 Populus trichocarpa 38.25 2.00e-66 244.00
IUUC-Pca-100394 Procavia capensis 29.02 9.00e-34 135.00
IUUC-Ppe-101848 Prunus persica 37.56 1.00e-66 245.00
IUUC-Pva-102921 Pteropus vampyrus 28.45 4.00e-17 80.90
IUUC-Pgr-103637 Puccinia graminis 27.29 2.00e-35 141.00
IUUC-Ptt-103781 Puccinia triticina 27.06 5.00e-36 143.00
IUUC-Pte-104135 Pyrenophora teres 30.93 1.00e-37 150.00
IUUC-Pyt-104609 Pyrenophora triticirepentis 30.79 8.00e-39 152.00
IUUC-Rno-105114 Rattus norvegicus 31.98 3.00e-42 164.00
IUUC-Sce-106401 Saccharomyces cerevisiae 30.35 9.00e-48 182.00
IUUC-Sha-107122 Sarcophilus harrisii 31.08 9.00e-42 162.00
IUUC-Sja-107766 Schizosaccharomyces japonicus 30.38 1.00e-45 175.00
IUUC-Spo-108134 Schizosaccharomyces pombe 29.15 5.00e-40 156.00
IUUC-Ssl-108398 Sclerotinia sclerotiorum 31.86 7.00e-46 176.00
IUUC-Smo-108720 Selaginella moellendorffii 38.79 3.00e-70 257.00
IUUC-Sit-110354 Setaria italica 39.55 2.00e-68 251.00
IUUC-Sly-111178 Solanum lycopersicum 37.69 2.00e-69 254.00
IUUC-Stu-112778 Solanum tuberosum 37.19 5.00e-66 243.00
IUUC-Sar-113596 Sorex araneus 30.67 7.00e-26 109.00
IUUC-Sbi-114193 Sorghum bicolor 38.29 1.00e-61 228.00
IUUC-Sre-115002 Sporisorium reilianum 32.93 4.00e-24 104.00
IUUC-Ssc-116066 Sus scrofa 30.46 2.00e-41 160.00
IUUC-Tgu-117048 Taeniopygia guttata 31.49 7.00e-39 152.00
IUUC-Tni-119820 Tetraodon nigroviridis 32.91 7.00e-48 182.00
IUUC-Tca-121605 Theobroma cacao 37.97 1.00e-65 241.00
IUUC-Tre-121947 Trichoderma reesei 33.66 5.00e-42 163.00
IUUC-Tvi-122481 Trichoderma virens 33.41 2.00e-41 161.00
IUUC-Tae-123504 Triticum aestivum 38.31 5.00e-68 249.00
IUUC-Tur-126586 Triticum urartu 36.29 2.00e-56 211.00
IUUC-Tme-126900 Tuber melanosporum 32.31 1.00e-48 185.00
IUUC-Tbe-127736 Tupaia belangeri 32.89 1.00e-15 75.50
IUUC-Ttr-129041 Tursiops truncatus 26.46 1.00e-30 125.00
IUUC-Uma-129628 Ustilago maydis 31.87 2.00e-15 75.10
IUUC-Vpa-130260 Vicugna pacos 30.71 6.00e-42 162.00
IUUC-Vvi-131009 Vitis vinifera 39.11 2.00e-69 254.00
IUUC-Xtr-132083 Xenopus tropicalis 30.81 6.00e-46 176.00
IUUC-Xma-133094 Xiphophorus maculatus 32.24 2.00e-50 191.00
IUUC-Zma-135509 Zea mays 39.05 8.00e-66 242.00
Created Date 25-Jun-2017

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