iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-100051

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Transducin family protein

Genbank Nucleotide ID

CM000342

Gene Name

POPTRDRAFT_801796; POPTR_0006s04430g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0006s04430	POPTR_0006s04430.1	POPTR_0006s04430.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.80e-40	135.2	447	483
UBD/Beta-Prp	6.60e-62	210.5	280	503

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvl 35
           gH  +  +++f ++  +l++G+ D+t+++WDlr+ ++
   Q: 447  GHVKPLLGISFsPNgYHLATGGEDNTCRIWDLRKKKS 483
           7999999*****77799***************98765 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvl 98
            ++ +++   fs d+++lat s +g  k+w+v + ++++ l+gh +  t+v fsp  + l+t+s Drt+++w+ + g+ +++++gh d++ 
   Q: 280  GDDRPLSGCSFSCDGEMLATCSLSGVAKIWSVPQVTKVSNLKGHMERATDVAFSPVHNHLATASADRTARLWNTD-GSLLMKFEGHLDRLA 369
           56788999999**************************************************************86.789************ PP
   S: 99   slsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfd 189
            ++f+psg++l ++s d+t r+wd+++g +l  +++gh++++ ++++h dg+l +s++lD   r+Wdl+tg+ +  ++g h ++   +sf+
   Q: 370  RVAFHPSGKYLGTTSFDKTWRLWDIDSGVELL-LQEGHSRSIYGIAFHHDGSLAASCGLDALARVWDLRTGRSIMAFEG-HVKPLLGISFS 458
           ********************************.*********************************************9.*********** PP
   S: 190  sngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnd 234
           +ng +l++g++d+t ++wdl++++ ++   +h++ v++v+f p++
   Q: 459  PNGYHLATGGEDNTCRIWDLRKKKSLYVIPAHSNLVSQVKFEPQE 503
           *****************************************9876 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MAAEEENPAL SNLPEESSAV VPDDELMIDN SSPIQPTPPI IPPVIPSSIP VLPSIAPIPI 60
VPPRPLAPLP IRPPATRPPG VQNGEMRTSD SDSDQEELSP TGTTPGSTGG YEISEASRLV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCCGCCATAA CAGTGTTTTA GTTAAAACTT AAAGGGTTCG ACAAAGTTCT CCAGGTCTCC 60
TTGTCCTAGA AAGACGATTT TCTCCAGCAA TACACACACA GGTACACTGA TTTATAATTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR014906--PRP4-like
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08799--PRP4
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00500--SFM
SM00320--WD40

Gene Ontology

GO:0046540--C:U4/U6 x U5 tri-snRNP complex
GO:0030621--F:U4 snRNA binding
GO:0017070--F:U6 snRNA binding
GO:0000398--P:mRNA splicing, via spliceosome

KEGG

pop:POPTR_0006s04430g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000771	Aegilops tauschii	66.51	4.00e-165	573.00
IUUC-Aml-001737	Ailuropoda melanoleuca	45.53	1.00e-114	406.00
IUUC-Atr-002828	Amborella trichopoda	72.11	0.00e+00	644.00
IUUC-Apl-003723	Anas platyrhynchos	44.69	2.00e-113	402.00
IUUC-Aca-004972	Anolis carolinensis	45.10	1.00e-111	396.00
IUUC-Aly-006531	Arabidopsis lyrata	69.07	5.00e-168	583.00
IUUC-Ath-007367	Arabidopsis thaliana	68.11	0.00e+00	650.00
IUUC-Ago-007893	Ashbya gossypii	32.88	5.00e-57	214.00
IUUC-Acl-008236	Aspergillus clavatus	37.15	9.00e-78	283.00
IUUC-Afl-008522	Aspergillus flavus	35.87	3.00e-79	288.00
IUUC-Afu-008904	Aspergillus fumigatus	37.43	1.00e-83	303.00
IUUC-Ani-009198	Aspergillus nidulans	36.25	2.00e-81	296.00
IUUC-Ang-009662	Aspergillus niger	39.70	2.00e-84	305.00
IUUC-Aor-009881	Aspergillus oryzae	35.56	1.00e-78	286.00
IUUC-Ate-010333	Aspergillus terreus	35.51	2.00e-75	275.00
IUUC-Ame-011697	Astyanax mexicanus	43.49	3.00e-111	395.00
IUUC-Bgr-012254	Blumeria graminis	33.89	3.00e-79	288.00
IUUC-Bta-012615	Bos taurus	45.53	6.00e-115	407.00
IUUC-Bci-013720	Botrytis cinerea	36.08	5.00e-85	307.00
IUUC-Bdi-014302	Brachypodium distachyon	68.53	3.00e-178	617.00
IUUC-Bol-015594	Brassica oleracea	71.12	3.00e-179	621.00
IUUC-Bra-017465	Brassica rapa	70.90	3.00e-179	621.00
IUUC-Cel-018632	Caenorhabditis elegans	35.93	2.00e-73	269.00
IUUC-Cja-019747	Callithrix jacchus	45.53	7.00e-115	407.00
IUUC-Cfa-020288	Canis familiaris	45.53	1.00e-114	406.00
IUUC-Cpo-021440	Cavia porcellus	45.53	2.00e-114	405.00
IUUC-Cre-022716	Chlamydomonas reinhardtii	50.72	3.00e-94	337.00
IUUC-Csa-023139	Chlorocebus sabaeus	53.00	3.00e-95	341.00
IUUC-Cho-024481	Choloepus hoffmanni	44.76	1.00e-112	399.00
IUUC-Cin-025106	Ciona intestinalis	41.37	2.00e-98	352.00
IUUC-Csv-026087	Ciona savignyi	42.04	4.00e-99	354.00
IUUC-Cgl-026538	Colletotrichum gloeosporioides	35.37	5.00e-82	298.00
IUUC-Cne-026793	Cryptococcus neoformans	38.00	1.00e-90	326.00
IUUC-Dre-028723	Danio rerio	43.21	1.00e-109	389.00
IUUC-Dno-029299	Dasypus novemcinctus	45.32	3.00e-114	404.00
IUUC-Dse-031562	Dothistroma septosporum	33.13	3.00e-74	272.00
IUUC-Dme-031783	Drosophila melanogaster	41.63	7.00e-87	313.00
IUUC-Ete-032669	Echinops telfairi	45.77	4.00e-116	411.00
IUUC-Eca-033566	Equus caballus	45.53	2.00e-114	405.00
IUUC-Eeu-034524	Erinaceus europaeus	52.30	6.00e-74	270.00
IUUC-Fca-036215	Felis catus	45.53	9.00e-115	406.00
IUUC-Fal-037018	Ficedula albicollis	44.59	1.00e-92	333.00
IUUC-Fox-037936	Fusarium oxysporum	33.81	2.00e-72	265.00
IUUC-Fso-038366	Fusarium solani	34.85	1.00e-77	283.00
IUUC-Gmo-038966	Gadus morhua	44.41	7.00e-84	303.00
IUUC-Ggr-039942	Gaeumannomyces graminis	32.86	6.00e-72	264.00
IUUC-Gga-040797	Gallus gallus	44.90	8.00e-114	403.00
IUUC-Gac-042598	Gasterosteus aculeatus	44.03	6.00e-105	374.00
IUUC-Gma-044220	Glycine max	80.17	0.00e+00	673.00
IUUC-Ggo-044682	Gorilla gorilla	45.53	1.00e-114	405.00
IUUC-Hsa-045804	Homo sapiens	45.53	6.00e-115	407.00
IUUC-Hvu-047567	Hordeum vulgare	66.06	5.00e-152	530.00
IUUC-Itr-047882	Ictidomys tridecemlineatus	45.75	2.00e-115	408.00
IUUC-Kpa-049369	Komagataella pastoris	33.88	6.00e-54	204.00
IUUC-Lch-050074	Latimeria chalumnae	44.15	3.00e-101	361.00
IUUC-Lpe-051333	Leersia perrieri	67.89	5.00e-161	560.00
IUUC-Loc-052164	Lepisosteus oculatus	43.82	2.00e-111	395.00
IUUC-Lma-053088	Leptosphaeria maculans	36.00	1.00e-73	269.00
IUUC-Laf-053460	Loxodonta africana	45.53	7.00e-115	407.00
IUUC-Mcc-055859	Macaca mulatta	45.53	9.00e-115	406.00
IUUC-Meu-056134	Macropus eugenii	45.32	8.00e-115	406.00
IUUC-Mor-057251	Magnaporthe oryzae	34.86	1.00e-78	286.00
IUUC-Mpo-057375	Magnaporthe poae	38.31	1.00e-50	192.00
IUUC-Mtr-058546	Medicago truncatula	70.62	7.00e-172	596.00
IUUC-Mla-059145	Melampsora laricipopulina	41.07	8.00e-86	310.00
IUUC-Mga-059855	Meleagris gallopavo	44.69	2.00e-113	402.00
IUUC-Mvi-060372	Microbotryum violaceum	40.00	8.00e-80	290.00
IUUC-Mmr-060826	Microcebus murinus	45.75	5.00e-115	407.00
IUUC-Mdo-062748	Monodelphis domestica	45.75	5.00e-115	407.00
IUUC-Mmu-063351	Mus musculus	45.53	9.00e-115	406.00
IUUC-Mac-064846	Musa acuminata	76.10	2.00e-173	600.00
IUUC-Mpu-066006	Mustela putorius furo	45.53	9.00e-115	406.00
IUUC-Mlu-067398	Myotis lucifugus	45.53	8.00e-115	407.00
IUUC-Nfi-068399	Neosartorya fischeri	37.82	2.00e-85	309.00
IUUC-Ncr-068711	Neurospora crassa	35.77	9.00e-83	300.00
IUUC-Nle-069982	Nomascus leucogenys	45.53	7.00e-115	407.00
IUUC-Opr-070596	Ochotona princeps	45.53	8.00e-115	406.00
IUUC-Ont-072374	Oreochromis niloticus	45.50	3.00e-104	371.00
IUUC-Oan-073166	Ornithorhynchus anatinus	48.47	3.00e-97	348.00
IUUC-Ocu-074371	Oryctolagus cuniculus	45.32	3.00e-114	405.00
IUUC-Oba-075083	Oryza barthii	66.02	2.00e-169	587.00
IUUC-Obr-076405	Oryza brachyantha	67.13	5.00e-165	573.00
IUUC-Ogl-077683	Oryza glaberrima	66.02	6.00e-169	586.00
IUUC-Ogu-078486	Oryza glumaepatula	66.45	2.00e-170	591.00
IUUC-Oin-079679	Oryza indica	66.45	3.00e-174	604.00
IUUC-Olo-080243	Oryza longistaminata	66.42	9.00e-150	522.00
IUUC-Ome-081230	Oryza meridionalis	66.45	5.00e-174	603.00
IUUC-Oni-082961	Oryza nivara	66.45	3.00e-174	604.00
IUUC-Opu-083189	Oryza punctata	65.81	2.00e-172	598.00
IUUC-Oru-084353	Oryza rufipogon	67.89	1.00e-169	588.00
IUUC-Osa-085458	Oryza sativa	66.45	5.00e-174	603.00
IUUC-Ola-086940	Oryzias latipes	44.69	6.00e-109	387.00
IUUC-Olu-087580	Ostreococcus lucimarinus	40.43	3.00e-73	268.00
IUUC-Oga-088703	Otolemur garnettii	43.23	2.00e-108	385.00
IUUC-Oar-089829	Ovis aries	45.75	3.00e-115	408.00
IUUC-Ptr-090838	Pan troglodytes	45.53	6.00e-115	407.00
IUUC-Pan-092261	Papio anubis	45.43	3.00e-113	401.00
IUUC-Psi-093020	Pelodiscus sinensis	44.23	2.00e-112	399.00
IUUC-Pno-094858	Phaeosphaeria nodorum	37.16	9.00e-75	273.00
IUUC-Ppa-095531	Physcomitrella patens	62.72	2.00e-164	571.00
IUUC-Pfo-096812	Poecilia formosa	41.71	2.00e-86	312.00
IUUC-Pab-097805	Pongo abelii	48.46	1.00e-93	336.00
IUUC-Pca-100152	Procavia capensis	45.32	2.00e-114	405.00
IUUC-Ppe-101244	Prunus persica	78.33	0.00e+00	640.00
IUUC-Pva-102529	Pteropus vampyrus	43.57	3.00e-107	381.00
IUUC-Pgr-103550	Puccinia graminis	37.50	8.00e-90	323.00
IUUC-Ptt-103951	Puccinia triticina	36.10	1.00e-63	237.00
IUUC-Pte-104151	Pyrenophora teres	32.70	7.00e-68	250.00
IUUC-Pyt-104571	Pyrenophora triticirepentis	33.33	2.00e-69	255.00
IUUC-Rno-105747	Rattus norvegicus	45.75	4.00e-115	407.00
IUUC-Sce-106418	Saccharomyces cerevisiae	34.73	4.00e-59	221.00
IUUC-Sha-107334	Sarcophilus harrisii	45.32	1.00e-114	406.00
IUUC-Sja-107794	Schizosaccharomyces japonicus	33.91	2.00e-63	236.00
IUUC-Spo-108189	Schizosaccharomyces pombe	40.35	3.00e-84	305.00
IUUC-Ssl-108550	Sclerotinia sclerotiorum	35.73	3.00e-85	308.00
IUUC-Smo-109578	Selaginella moellendorffii	60.00	1.00e-154	539.00
IUUC-Sit-110102	Setaria italica	67.10	1.00e-171	595.00
IUUC-Sly-111668	Solanum lycopersicum	77.27	0.00e+00	669.00
IUUC-Stu-111928	Solanum tuberosum	78.07	0.00e+00	683.00
IUUC-Sar-113266	Sorex araneus	40.52	4.00e-98	351.00
IUUC-Sbi-114134	Sorghum bicolor	67.10	7.00e-173	599.00
IUUC-Sre-115114	Sporisorium reilianum	40.92	9.00e-90	323.00
IUUC-Ssc-115443	Sus scrofa	45.53	1.00e-114	405.00
IUUC-Tgu-117157	Taeniopygia guttata	45.12	2.00e-114	405.00
IUUC-Tru-118587	Takifugu rubripes	45.02	6.00e-107	380.00
IUUC-Tsy-119157	Tarsius syrichta	49.30	2.00e-100	358.00
IUUC-Tni-120427	Tetraodon nigroviridis	44.42	1.00e-107	382.00
IUUC-Tca-121368	Theobroma cacao	81.63	0.00e+00	751.00
IUUC-Tre-122074	Trichoderma reesei	35.08	6.00e-79	287.00
IUUC-Tvi-122349	Trichoderma virens	35.08	7.00e-79	287.00
IUUC-Tae-125651	Triticum aestivum	65.85	6.00e-169	586.00
IUUC-Tur-126532	Triticum urartu	66.84	8.00e-148	516.00
IUUC-Tme-126951	Tuber melanosporum	37.73	7.00e-79	287.00
IUUC-Tbe-128136	Tupaia belangeri	41.83	2.00e-100	359.00
IUUC-Ttr-129169	Tursiops truncatus	37.01	4.00e-51	194.00
IUUC-Uma-129399	Ustilago maydis	37.89	8.00e-85	306.00
IUUC-Vda-129842	Verticillium dahliae	36.71	9.00e-84	303.00
IUUC-Vpa-130440	Vicugna pacos	45.53	7.00e-115	407.00
IUUC-Vvi-131075	Vitis vinifera	79.96	0.00e+00	675.00
IUUC-Xma-133002	Xiphophorus maculatus	47.47	1.00e-93	335.00
IUUC-Yli-134569	Yarrowia lipolytica	35.40	6.00e-72	264.00
IUUC-Zma-135799	Zea mays	62.32	4.00e-166	577.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence