iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-007320

UUCD1 version

UUC-ArT-01649

Ensembl Protein ID

AT2G16920.2

UniProt Accession

Q9ZVX1; UBC23_ARATH

Genbank Protein ID

AAC64223.1; AEC06554.1; ANM62201.1

Protein Name

Probable ubiquitin-conjugating enzyme E2 23; E2 ubiquitin-conjugating enzyme 23; Ubiquitin carrier protein 23

Genbank Nucleotide ID

AC005167; CP002685; CP002685

Gene Name

UBC23; At2g16920; F12A24.10

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT2G16920	AT2G16920.2	AT2G16920.2

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E2/UBC	7.60e-25	88.2	856	989

Active Site

Position(s)	Description	Evidence
936	Glycyl thioester intermediate	{ECO:0000255\|PROSITE-ProRule:PRU00388}

Domain Profile

E2/UBC

   S: 3    kkelkelekdppegisakpvdesdltewevlilGpedtpYeggvFkleiefpedYPfkPPkvkfltk..ifhPnvyenGkvClsilk.....eeekWs 93
            ++ k l+++ p+gi+++  ++  ++ ++++i+G  +tpY++g+F +++++p+dYP+ PP+  + +   +++Pn+ye+GkvCls+l+      +e W 
   Q: 856  DQDWKILQNNLPDGIFVRAYED-RMDLLRAVIVGAFGTPYQDGLFFFDFHLPSDYPSVPPSAYYHSGgwRLNPNLYEEGKVCLSLLNtwtgrGNEVWD 952
           689999****************.5******************************************99999***************77777789**** PP
   S: 94   p.alsvesvllsiqsll..aepnpesplneeaaellk 127
           p  +s+ +vl+s+q l+  ++p+++++ +++++ + +
   Q: 953  PkSSSILQVLVSLQGLVlnSKPYFNEAGYDKQVGTAE 989
           *7789***********98888*****99988875444 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.

Protein Sequence
(Fasta)

MEHEQDDPGT STNVGVDSSV DDSMASLSIC DSEHPNIYRQ DIVKNKKTGS VGVVSEVAGD 60
SDSDSDISDE EEDDDDDEDN DDDDEDVEEG KKASEENVVN GDGEKKADGN YKCGALEGDQ 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TGGGATGTCA TAAAAAAAAA GAAACAATTA GAGACAATAA TGACGACTAT ACCCTTGACG 60
CCGCTGAGCT CCTCCTCCTT CCTCTTGCCT TGTTCAATCT TTCTCCTCGA TTCTTCTTCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0067--ATP-binding
KW-0181--Complete proteome
KW-0547--Nucleotide-binding
KW-1185--Reference proteome
KW-0808--Transferase
KW-0833--Ubl conjugation pathway

Interpro

IPR000608--UBQ-conjugat_E2
IPR016135--UBQ-conjugating_enzyme/RWD

PROSITE

PS50127--UBIQUITIN_CONJUGAT_2

Pfam

PF00179--UQ_con

Gene Ontology

GO:0005829--C:cytosol
GO:0005524--F:ATP binding
GO:0061630--F:ubiquitin protein ligase activity
GO:0031625--F:ubiquitin protein ligase binding

KEGG

ath:AT2G16920

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000597	Aegilops tauschii	48.02	0.00e+00	901.00
IUUC-Aml-001463	Ailuropoda melanoleuca	44.70	6.00e-56	212.00
IUUC-Atr-002469	Amborella trichopoda	55.13	0.00e+00	687.00
IUUC-Apl-004084	Anas platyrhynchos	46.73	2.00e-54	207.00
IUUC-Aca-004435	Anolis carolinensis	46.01	3.00e-53	203.00
IUUC-Aly-005970	Arabidopsis lyrata	91.25	0.00e+00	1858.00
IUUC-Acl-008031	Aspergillus clavatus	46.37	5.00e-43	169.00
IUUC-Afu-009040	Aspergillus fumigatus	35.85	5.00e-43	169.00
IUUC-Ang-009816	Aspergillus niger	43.72	4.00e-43	169.00
IUUC-Aor-010121	Aspergillus oryzae	46.94	5.00e-37	149.00
IUUC-Ame-010604	Astyanax mexicanus	44.81	1.00e-51	197.00
IUUC-Bta-013234	Bos taurus	29.64	2.00e-66	247.00
IUUC-Bdi-015067	Brachypodium distachyon	50.34	0.00e+00	835.00
IUUC-Bol-015667	Brassica oleracea	75.83	0.00e+00	1477.00
IUUC-Bra-016796	Brassica rapa	82.70	0.00e+00	1516.00
IUUC-Cja-018812	Callithrix jacchus	43.78	3.00e-54	206.00
IUUC-Cfa-020448	Canis familiaris	44.70	6.00e-56	212.00
IUUC-Cpo-021316	Cavia porcellus	29.31	8.00e-67	248.00
IUUC-Csa-023869	Chlorocebus sabaeus	43.78	3.00e-54	206.00
IUUC-Dre-028814	Danio rerio	43.75	3.00e-52	199.00
IUUC-Dno-029590	Dasypus novemcinctus	50.00	2.00e-36	147.00
IUUC-Dor-030644	Dipodomys ordii	36.11	5.00e-36	146.00
IUUC-Dse-031508	Dothistroma septosporum	45.36	2.00e-42	167.00
IUUC-Dme-032211	Drosophila melanogaster	40.44	2.00e-53	204.00
IUUC-Eca-033413	Equus caballus	43.84	8.00e-54	205.00
IUUC-Eeu-035035	Erinaceus europaeus	46.19	6.00e-50	192.00
IUUC-Fca-035610	Felis catus	44.24	8.00e-55	208.00
IUUC-Fal-036879	Ficedula albicollis	46.95	1.00e-55	211.00
IUUC-Gmo-039262	Gadus morhua	44.70	2.00e-53	203.00
IUUC-Gga-040958	Gallus gallus	46.95	2.00e-55	211.00
IUUC-Gac-041730	Gasterosteus aculeatus	46.01	5.00e-53	202.00
IUUC-Gma-042690	Glycine max	63.88	0.00e+00	1188.00
IUUC-Ggo-045316	Gorilla gorilla	43.78	3.00e-54	206.00
IUUC-Hsa-046126	Homo sapiens	43.78	3.00e-54	206.00
IUUC-Hvu-047713	Hordeum vulgare	47.89	0.00e+00	878.00
IUUC-Itr-048048	Ictidomys tridecemlineatus	43.84	1.00e-53	204.00
IUUC-Lch-050531	Latimeria chalumnae	46.73	1.00e-54	207.00
IUUC-Lpe-051587	Leersia perrieri	47.66	0.00e+00	860.00
IUUC-Loc-052209	Lepisosteus oculatus	44.60	1.00e-51	197.00
IUUC-Lma-053064	Leptosphaeria maculans	34.94	2.00e-30	127.00
IUUC-Mcc-055722	Macaca mulatta	43.78	3.00e-54	206.00
IUUC-Meu-056834	Macropus eugenii	44.19	4.00e-54	206.00
IUUC-Mtr-057804	Medicago truncatula	61.51	0.00e+00	1118.00
IUUC-Mga-059571	Meleagris gallopavo	46.48	1.00e-54	207.00
IUUC-Mvi-060389	Microbotryum violaceum	43.46	5.00e-50	192.00
IUUC-Mmr-061535	Microcebus murinus	44.24	1.00e-54	207.00
IUUC-Mdo-062111	Monodelphis domestica	44.70	7.00e-56	212.00
IUUC-Mmu-064171	Mus musculus	41.53	6.00e-55	209.00
IUUC-Mac-065585	Musa acuminata	46.55	0.00e+00	791.00
IUUC-Mpu-065697	Mustela putorius furo	44.70	8.00e-56	211.00
IUUC-Mlu-068177	Myotis lucifugus	42.32	1.00e-53	204.00
IUUC-Nfi-068366	Neosartorya fischeri	35.71	3.00e-44	173.00
IUUC-Nle-069704	Nomascus leucogenys	43.78	2.00e-54	207.00
IUUC-Opr-070982	Ochotona princeps	44.70	2.00e-55	210.00
IUUC-Ont-072115	Oreochromis niloticus	44.13	1.00e-51	198.00
IUUC-Oan-072991	Ornithorhynchus anatinus	48.31	2.00e-30	127.00
IUUC-Ocu-073994	Oryctolagus cuniculus	44.70	8.00e-55	208.00
IUUC-Oba-075236	Oryza barthii	50.49	0.00e+00	897.00
IUUC-Obr-076363	Oryza brachyantha	51.64	0.00e+00	893.00
IUUC-Ogl-077340	Oryza glaberrima	49.80	0.00e+00	877.00
IUUC-Ogu-078084	Oryza glumaepatula	49.11	0.00e+00	852.00
IUUC-Ome-081767	Oryza meridionalis	50.25	0.00e+00	899.00
IUUC-Oni-082897	Oryza nivara	50.39	0.00e+00	894.00
IUUC-Opu-083143	Oryza punctata	50.89	0.00e+00	907.00
IUUC-Oru-084813	Oryza rufipogon	50.49	0.00e+00	897.00
IUUC-Osa-085536	Oryza sativa	49.80	0.00e+00	876.00
IUUC-Ola-087200	Oryzias latipes	46.12	3.00e-50	193.00
IUUC-Oga-088737	Otolemur garnettii	44.24	1.00e-54	208.00
IUUC-Oar-090259	Ovis aries	35.23	3.00e-47	183.00
IUUC-Ptr-091146	Pan troglodytes	47.42	4.00e-51	196.00
IUUC-Pan-091743	Papio anubis	43.78	3.00e-54	206.00
IUUC-Psi-093231	Pelodiscus sinensis	46.48	2.00e-50	193.00
IUUC-Pma-094499	Petromyzon marinus	46.83	6.00e-53	202.00
IUUC-Pno-095065	Phaeosphaeria nodorum	50.76	2.00e-34	140.00
IUUC-Ppa-095324	Physcomitrella patens	43.06	1.00e-118	420.00
IUUC-Pfo-096799	Poecilia formosa	45.07	5.00e-52	199.00
IUUC-Pab-098220	Pongo abelii	43.78	3.00e-54	206.00
IUUC-Pop-099156	Populus trichocarpa	60.67	0.00e+00	1047.00
IUUC-Pca-100963	Procavia capensis	44.70	4.00e-55	209.00
IUUC-Ppe-101372	Prunus persica	63.05	0.00e+00	1196.00
IUUC-Pva-102384	Pteropus vampyrus	43.32	4.00e-53	202.00
IUUC-Pte-104381	Pyrenophora teres	46.29	2.00e-41	163.00
IUUC-Pyt-104607	Pyrenophora triticirepentis	37.19	4.00e-41	162.00
IUUC-Rno-105947	Rattus norvegicus	40.89	8.00e-56	211.00
IUUC-Sha-106642	Sarcophilus harrisii	44.70	5.00e-56	212.00
IUUC-Smo-109361	Selaginella moellendorffii	60.73	2.00e-102	366.00
IUUC-Sit-110041	Setaria italica	52.26	0.00e+00	627.00
IUUC-Sly-111922	Solanum lycopersicum	62.85	0.00e+00	1114.00
IUUC-Stu-112339	Solanum tuberosum	61.85	0.00e+00	1134.00
IUUC-Sar-113102	Sorex araneus	39.67	9.00e-19	87.00
IUUC-Sbi-114493	Sorghum bicolor	50.84	0.00e+00	889.00
IUUC-Sre-114954	Sporisorium reilianum	45.83	1.00e-46	181.00
IUUC-Ssc-115901	Sus scrofa	41.70	3.00e-55	210.00
IUUC-Tgu-116873	Taeniopygia guttata	46.51	4.00e-54	206.00
IUUC-Tru-118710	Takifugu rubripes	37.96	8.00e-43	168.00
IUUC-Tsy-119256	Tarsius syrichta	47.75	7.00e-46	179.00
IUUC-Tni-120839	Tetraodon nigroviridis	44.81	5.00e-52	199.00
IUUC-Tca-121665	Theobroma cacao	63.70	0.00e+00	1208.00
IUUC-Tae-124031	Triticum aestivum	47.51	0.00e+00	889.00
IUUC-Tme-127207	Tuber melanosporum	37.60	7.00e-37	149.00
IUUC-Ttr-128990	Tursiops truncatus	44.24	1.00e-54	208.00
IUUC-Uma-129323	Ustilago maydis	38.68	4.00e-47	182.00
IUUC-Vvi-131411	Vitis vinifera	64.13	0.00e+00	1254.00
IUUC-Xma-133380	Xiphophorus maculatus	44.60	7.00e-52	199.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence