iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ptr-091142

Ensembl Protein ID

ENSPTRP00000027159.4

UniProt Accession

H2QP10; H2QP10_PANTR

Genbank Protein ID

JAA01010.1; JAA17839.1; JAA34670.1

Protein Name

WD repeat domain 53

Genbank Nucleotide ID

AACZ03029299; GABF01004306; GABE01010069

Gene Name

WDR53

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSPTRG00000015782.4	ENSPTRT00000029428.4	ENSPTRP00000027159.4

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	8.50e-25	85.8	239	273

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtg 33
           gHt +v+ ++f ++  ll++G++Dg+i +WD  + 
   Q: 239  GHTLGVSQVCFlPEsYLLLTGGNDGKITLWDANSE 273
           8999********88899**************6655 PP

Organism

Pan troglodytes

Protein Sequence
(Fasta)

MAVKWTGGHS SPVLCLNASK EGLLASGAEG GDLTAWGEDG TPLGHTRFQG ADDVTSVLFS 60
PSCPTKLYAS HGETISVLDV RSLKDSLDHF HVNEEEINCL SLNQTENLLA SADDSGAIKI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CGAGGAGGGG AGCGGGAAGC GCAGGTATGA GGCTGGCGCC GGTGGCTTCG ATGCTGCTTT 60
CCGGTGACTT CGATGCCGTT TTCCAGTGCT TTTTCCTTTT GCTGGTCTGG TGGCTCCGCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR024977--Apc4_WD40_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12894--ANAPC4_WD40
PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005737--C:cytoplasm

KEGG

ptr:471050

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000124	Aegilops tauschii	28.22	6.00e-14	72.00
IUUC-Aml-001203	Ailuropoda melanoleuca	91.62	0.00e+00	646.00
IUUC-Atr-002680	Amborella trichopoda	25.45	2.00e-22	99.80
IUUC-Apl-003656	Anas platyrhynchos	58.26	9.00e-106	376.00
IUUC-Aca-004987	Anolis carolinensis	63.79	1.00e-125	442.00
IUUC-Aly-006254	Arabidopsis lyrata	30.69	3.00e-28	119.00
IUUC-Ath-006632	Arabidopsis thaliana	29.51	2.00e-26	113.00
IUUC-Ame-011032	Astyanax mexicanus	46.49	1.00e-91	329.00
IUUC-Bta-012588	Bos taurus	82.12	2.00e-164	570.00
IUUC-Bdi-014532	Brachypodium distachyon	26.16	5.00e-25	108.00
IUUC-Bol-015542	Brassica oleracea	27.96	2.00e-20	94.70
IUUC-Bra-017046	Brassica rapa	30.67	7.00e-28	119.00
IUUC-Cja-019365	Callithrix jacchus	95.81	0.00e+00	711.00
IUUC-Cfa-021090	Canis familiaris	90.22	0.00e+00	644.00
IUUC-Cpo-021517	Cavia porcellus	83.01	0.00e+00	625.00
IUUC-Csa-023041	Chlorocebus sabaeus	98.32	0.00e+00	690.00
IUUC-Cho-024801	Choloepus hoffmanni	89.39	0.00e+00	659.00
IUUC-Dre-028437	Danio rerio	47.99	4.00e-87	314.00
IUUC-Dno-029267	Dasypus novemcinctus	89.11	0.00e+00	663.00
IUUC-Ete-032726	Echinops telfairi	74.02	1.00e-152	532.00
IUUC-Eca-033621	Equus caballus	91.29	1.00e-179	621.00
IUUC-Eeu-034461	Erinaceus europaeus	76.82	1.00e-161	561.00
IUUC-Fca-036410	Felis catus	89.94	0.00e+00	642.00
IUUC-Fal-036676	Ficedula albicollis	64.99	8.00e-130	456.00
IUUC-Gmo-039597	Gadus morhua	34.48	2.00e-17	83.60
IUUC-Gga-040760	Gallus gallus	63.32	3.00e-71	260.00
IUUC-Gac-041905	Gasterosteus aculeatus	49.32	3.00e-90	324.00
IUUC-Gma-043066	Glycine max	30.29	8.00e-17	81.30
IUUC-Ggo-044881	Gorilla gorilla	99.16	0.00e+00	695.00
IUUC-Hsa-046836	Homo sapiens	99.72	0.00e+00	696.00
IUUC-Hvu-047651	Hordeum vulgare	26.09	1.00e-23	103.00
IUUC-Itr-048206	Ictidomys tridecemlineatus	91.88	0.00e+00	652.00
IUUC-Lch-050406	Latimeria chalumnae	52.94	1.00e-94	339.00
IUUC-Loc-052878	Lepisosteus oculatus	53.04	1.00e-98	352.00
IUUC-Laf-053547	Loxodonta africana	87.68	0.00e+00	643.00
IUUC-Mcc-054646	Macaca mulatta	98.32	0.00e+00	689.00
IUUC-Meu-056381	Macropus eugenii	76.54	4.00e-163	566.00
IUUC-Mtr-058656	Medicago truncatula	27.70	4.00e-18	85.90
IUUC-Mmr-061601	Microcebus murinus	90.20	0.00e+00	665.00
IUUC-Mdo-062305	Monodelphis domestica	76.82	4.00e-165	573.00
IUUC-Mmu-063213	Mus musculus	83.80	1.00e-171	595.00
IUUC-Mac-064940	Musa acuminata	24.88	2.00e-28	119.00
IUUC-Mpu-066629	Mustela putorius furo	90.78	0.00e+00	647.00
IUUC-Nle-069860	Nomascus leucogenys	99.16	0.00e+00	692.00
IUUC-Opr-071180	Ochotona princeps	85.63	1.00e-155	541.00
IUUC-Ont-071912	Oreochromis niloticus	47.15	1.00e-97	350.00
IUUC-Ocu-074874	Oryctolagus cuniculus	89.66	0.00e+00	666.00
IUUC-Oba-075815	Oryza barthii	25.76	3.00e-14	72.40
IUUC-Obr-076835	Oryza brachyantha	33.96	1.00e-20	93.20
IUUC-Ogu-077977	Oryza glumaepatula	30.62	5.00e-14	72.00
IUUC-Oin-079206	Oryza indica	25.91	9.00e-24	104.00
IUUC-Olo-080621	Oryza longistaminata	29.23	8.00e-14	71.20
IUUC-Ome-081261	Oryza meridionalis	25.30	7.00e-13	67.80
IUUC-Opu-083256	Oryza punctata	29.44	2.00e-14	73.20
IUUC-Osa-085892	Oryza sativa	25.91	9.00e-24	104.00
IUUC-Ola-086701	Oryzias latipes	47.55	9.00e-91	327.00
IUUC-Olu-087593	Ostreococcus lucimarinus	22.75	9.00e-08	51.20
IUUC-Oga-088152	Otolemur garnettii	89.64	0.00e+00	660.00
IUUC-Oar-089681	Ovis aries	88.27	2.00e-179	620.00
IUUC-Pan-092435	Papio anubis	98.32	0.00e+00	662.00
IUUC-Psi-093255	Pelodiscus sinensis	69.10	9.00e-146	509.00
IUUC-Ppa-095829	Physcomitrella patens	30.26	3.00e-30	125.00
IUUC-Pfo-097339	Poecilia formosa	45.03	5.00e-86	310.00
IUUC-Pab-098274	Pongo abelii	98.04	0.00e+00	679.00
IUUC-Pop-099705	Populus trichocarpa	25.20	2.00e-27	116.00
IUUC-Pca-100451	Procavia capensis	85.67	0.00e+00	644.00
IUUC-Ppe-101220	Prunus persica	26.20	9.00e-27	114.00
IUUC-Pva-102385	Pteropus vampyrus	90.50	0.00e+00	644.00
IUUC-Rno-105765	Rattus norvegicus	82.40	4.00e-168	583.00
IUUC-Sha-106533	Sarcophilus harrisii	74.86	4.00e-160	556.00
IUUC-Smo-109248	Selaginella moellendorffii	26.84	7.00e-29	120.00
IUUC-Sit-110297	Setaria italica	25.48	2.00e-20	92.80
IUUC-Sly-111617	Solanum lycopersicum	31.86	1.00e-23	103.00
IUUC-Stu-112531	Solanum tuberosum	31.86	2.00e-23	102.00
IUUC-Sar-113647	Sorex araneus	81.28	1.00e-174	605.00
IUUC-Sbi-114621	Sorghum bicolor	26.70	1.00e-25	110.00
IUUC-Tgu-116482	Taeniopygia guttata	65.27	9.00e-126	442.00
IUUC-Tru-118622	Takifugu rubripes	48.51	2.00e-88	319.00
IUUC-Tsy-119474	Tarsius syrichta	88.83	0.00e+00	664.00
IUUC-Tni-120250	Tetraodon nigroviridis	47.97	7.00e-81	293.00
IUUC-Tca-121583	Theobroma cacao	27.54	7.00e-29	121.00
IUUC-Tae-123764	Triticum aestivum	32.54	5.00e-24	105.00
IUUC-Tur-126076	Triticum urartu	23.12	2.00e-13	70.10
IUUC-Tbe-127545	Tupaia belangeri	88.80	2.00e-179	621.00
IUUC-Ttr-128497	Tursiops truncatus	88.55	8.00e-180	622.00
IUUC-Vpa-130772	Vicugna pacos	89.39	0.00e+00	630.00
IUUC-Vvi-131632	Vitis vinifera	26.30	4.00e-32	132.00
IUUC-Xma-133432	Xiphophorus maculatus	45.57	1.00e-89	322.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence