iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSRNOG00000004520.7	ENSRNOT00000087845.1	ENSRNOP00000072019.1
ENSRNOG00000004520.7	ENSRNOT00000006144.6	ENSRNOP00000006144.6

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC	RAID2
Post-translational Modifications (PTMs)
dbPAF
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.30e-08	33.3	677	711

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 3    tdsvtclaf..sd.tllvsGsdDgtikvWDlrtgv 34
           +++vtc++f      ll +G+  g++ vWDlr++ 
   Q: 677  ESKVTCCCFspLKaFLLFAGTVHGSVVVWDLREDS 711
           589******7622346999************9875 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MEPGKLQVRF VEEFLDSSRG VAECQLKEVT GHLKKKCRKR RTKDDTWKAD DLRRHLKAAQ 60
SGSPKEEKKL REKKMHKDSE LGTPEYREHK SRDPDREARH KEKTVERDLY SSTEHPRGER 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCGGCCCTCC CGGGACCCGC GTCGCGGCAG GCCCTAGCAG GCTAGTCGAG CTGAGCGACG 60
GCGGGCTTGT CTTCCTCCGG TGGCCCGCGC CTGTTGGGCT GAAGACACGC GGCTGCCCGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR003143--Cyt_cd1_C
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

SMART

SM00320--WD40

Gene Ontology

GO:0097546--C:ciliary base
GO:0005868--C:cytoplasmic dynein complex
GO:0070062--C:extracellular exosome
GO:0005615--C:extracellular space
GO:0031021--C:interphase microtubule organizing center
GO:0000242--C:pericentriolar material
GO:0000922--C:spindle pole
GO:0060271--P:cilium assembly
GO:0048704--P:embryonic skeletal system morphogenesis

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001741	Ailuropoda melanoleuca	66.64	0.00e+00	1216.00
IUUC-Apl-003689	Anas platyrhynchos	57.95	0.00e+00	793.00
IUUC-Ame-011562	Astyanax mexicanus	42.44	5.00e-75	276.00
IUUC-Bta-013100	Bos taurus	70.70	0.00e+00	1045.00
IUUC-Cja-019521	Callithrix jacchus	63.89	0.00e+00	1133.00
IUUC-Cfa-020943	Canis familiaris	63.85	0.00e+00	1091.00
IUUC-Cho-024500	Choloepus hoffmanni	74.11	0.00e+00	834.00
IUUC-Dre-028530	Danio rerio	47.35	7.00e-177	614.00
IUUC-Dno-029442	Dasypus novemcinctus	74.90	0.00e+00	1103.00
IUUC-Eca-033951	Equus caballus	69.46	0.00e+00	1248.00
IUUC-Fca-036542	Felis catus	65.68	0.00e+00	1095.00
IUUC-Fal-037079	Ficedula albicollis	55.94	0.00e+00	738.00
IUUC-Gac-041396	Gasterosteus aculeatus	47.16	2.00e-158	553.00
IUUC-Ggo-045638	Gorilla gorilla	77.19	0.00e+00	1033.00
IUUC-Hsa-046371	Homo sapiens	80.06	0.00e+00	1088.00
IUUC-Itr-049031	Ictidomys tridecemlineatus	78.21	0.00e+00	1036.00
IUUC-Loc-052637	Lepisosteus oculatus	50.08	2.00e-166	580.00
IUUC-Laf-053470	Loxodonta africana	70.11	0.00e+00	1231.00
IUUC-Mcc-055753	Macaca mulatta	79.61	0.00e+00	1119.00
IUUC-Mga-059230	Meleagris gallopavo	57.21	0.00e+00	724.00
IUUC-Mmr-061703	Microcebus murinus	60.65	0.00e+00	1032.00
IUUC-Mmu-064346	Mus musculus	93.66	0.00e+00	1586.00
IUUC-Mpu-066650	Mustela putorius furo	66.80	0.00e+00	1075.00
IUUC-Nle-069413	Nomascus leucogenys	78.28	0.00e+00	1064.00
IUUC-Opr-071033	Ochotona princeps	75.75	0.00e+00	1060.00
IUUC-Ont-071388	Oreochromis niloticus	46.99	6.00e-170	591.00
IUUC-Oan-072714	Ornithorhynchus anatinus	48.77	0.00e+00	879.00
IUUC-Ocu-074557	Oryctolagus cuniculus	70.02	0.00e+00	1128.00
IUUC-Oga-088938	Otolemur garnettii	68.25	0.00e+00	1191.00
IUUC-Oar-090053	Ovis aries	60.35	0.00e+00	811.00
IUUC-Pan-091852	Papio anubis	62.60	0.00e+00	1080.00
IUUC-Psi-093781	Pelodiscus sinensis	59.94	0.00e+00	776.00
IUUC-Pfo-096078	Poecilia formosa	42.95	1.00e-146	514.00
IUUC-Pab-097947	Pongo abelii	79.91	0.00e+00	1087.00
IUUC-Tgu-117448	Taeniopygia guttata	55.87	0.00e+00	720.00
IUUC-Tni-120297	Tetraodon nigroviridis	44.68	5.00e-154	538.00
IUUC-Xtr-132946	Xenopus tropicalis	52.26	0.00e+00	648.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence