iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Spo-108332

Ensembl Protein ID

SPAC589.10c.1:pep

UniProt Accession

P0C8R3; O13697; O14257; P0C014; Q76PD0; Q9HDZ4; RS27B_SCHPO

Genbank Protein ID

CAC19767.1

Protein Name

Ubiquitin-40S ribosomal protein S27b; Ubiquitin; 40S ribosomal protein S27b

Genbank Nucleotide ID

CU329670

Gene Name

ubi5; SPAC589.10c

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
SPAC589.10c	SPAC589.10c.1	SPAC589.10c.1:pep

Annotation

mRNA Expression
GEO
Protein-protein Interaction
iRefIndex	Mentha
Post-translational Modifications (PTMs)
dbPTM
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UBL/NEDD8	7.70e-42	139.6	1	76
ULD/UDP/UBQ/UBQ_PIM	3.80e-29	98.6	1	73

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UBL/NEDD8

   S: 1    mlikvktLtgkeieieieesdtierikerveekeGiPPsqqrliyaGkqleddktaadynlekgsvLhLvLaLrGG 76
           m+i+vktLtgk+i++e+e+sdti+++k ++++keGiPP+qqrli+aGkqled++t++dyn++k+s+LhLvL+LrGG
   Q: 1    MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
           89*************************************************************************9 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesgvppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkk 73
           m+++vktl+gk+++lev+++dt+ ++K ki+++ g+pp+qq+LI+aGk+L+D +tLs+++i+++s++hlv++ 
   Q: 1    MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73
           99********************************************************************986 PP

Organism

Schizosaccharomyces pombe

Functional Description
(View)

Ribosomal protein S27b is part of the 40S ribosomal subunit.

Protein Sequence
(Fasta)

MQIFVKTLTG KTITLEVESS DTIDNVKSKI QDKEGIPPDQ QRLIFAGKQL EDGRTLSDYN 60
IQKESTLHLV LRLRGGGKKR KKKTYTTPKK IKHKHKKVEL AVLKYYKVED DGSVKRLRRE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ACTTAACAAA AGAAATATGA ATTTCGAAAA ACATTTCTAA GCACAACCAA AATGCAAATT 60
TTCGTCAAAA CCCTTACGGG TAAGACGATT ACCCTTGAGG TGGAGTCCTC TGACACTATT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-1017--Isopeptide bond
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0687--Ribonucleoprotein
KW-0689--Ribosomal protein
KW-0832--Ubl conjugation
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR002906--Ribosomal_S27a
IPR011332--Ribosomal_zn-bd
IPR019956--Ubiquitin
IPR029071--Ubiquitin-rel_dom
IPR019954--Ubiquitin_CS
IPR000626--Ubiquitin_dom

PROSITE

PS00299--UBIQUITIN_1
PS50053--UBIQUITIN_2

Pfam

PF01599--Ribosomal_S27
PF00240--ubiquitin

PRINTS

PR00348--UBIQUITIN

SMART

SM01402--Ribosomal_S27
SM00213--UBQ

Gene Ontology

GO:0005737--C:cytoplasm
GO:0022627--C:cytosolic small ribosomal subunit
GO:0005730--C:nucleolus
GO:0046872--F:metal ion binding
GO:0003735--F:structural constituent of ribosome
GO:0002181--P:cytoplasmic translation
GO:0016567--P:protein ubiquitination
GO:0042254--P:ribosome biogenesis

KEGG

spo:SPAC589.10c

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Apl-003364	Anas platyrhynchos	74.48	4.00e-38	148.00
IUUC-Afl-008474	Aspergillus flavus	86.39	8.00e-52	193.00
IUUC-Afu-009021	Aspergillus fumigatus	85.71	8.00e-54	200.00
IUUC-Aor-009936	Aspergillus oryzae	86.39	8.00e-52	193.00
IUUC-Ame-011421	Astyanax mexicanus	83.67	1.00e-45	173.00
IUUC-Bci-013920	Botrytis cinerea	87.07	2.00e-52	196.00
IUUC-Bol-015420	Brassica oleracea	85.71	2.00e-53	199.00
IUUC-Cpo-021905	Cavia porcellus	82.55	2.00e-44	169.00
IUUC-Cne-026972	Cryptococcus neoformans	62.25	2.00e-36	142.00
IUUC-Dre-028206	Danio rerio	83.67	1.00e-45	173.00
IUUC-Ete-032297	Echinops telfairi	55.78	8.00e-40	154.00
IUUC-Gmo-039231	Gadus morhua	83.67	1.00e-45	173.00
IUUC-Loc-052020	Lepisosteus oculatus	83.67	1.00e-45	173.00
IUUC-Mla-058871	Melampsora laricipopulina	83.67	1.00e-52	196.00
IUUC-Mga-059211	Meleagris gallopavo	78.10	3.00e-37	145.00
IUUC-Nfi-068350	Neosartorya fischeri	85.71	8.00e-54	200.00
IUUC-Opr-070523	Ochotona princeps	82.19	8.00e-43	164.00
IUUC-Ola-086383	Oryzias latipes	83.67	8.00e-46	174.00
IUUC-Oga-089160	Otolemur garnettii	70.14	5.00e-43	164.00
IUUC-Psi-093901	Pelodiscus sinensis	81.68	1.00e-36	143.00
IUUC-Pfo-097442	Poecilia formosa	83.67	1.00e-45	173.00
IUUC-Pgr-103596	Puccinia graminis	85.03	2.00e-50	189.00
IUUC-Pte-104221	Pyrenophora teres	85.71	9.00e-54	200.00
IUUC-Pyt-104464	Pyrenophora triticirepentis	84.35	9.00e-53	196.00
IUUC-Sce-106232	Saccharomyces cerevisiae	86.18	7.00e-54	200.00
IUUC-Sha-106772	Sarcophilus harrisii	83.67	8.00e-46	174.00
IUUC-Sja-107885	Schizosaccharomyces japonicus	96.67	1.00e-65	239.00
IUUC-Ssl-108492	Sclerotinia sclerotiorum	87.07	2.00e-52	196.00
IUUC-Sit-110054	Setaria italica	86.49	5.00e-53	197.00
IUUC-Tgu-116890	Taeniopygia guttata	83.11	1.00e-44	170.00
IUUC-Tre-122027	Trichoderma reesei	87.07	4.00e-55	204.00
IUUC-Tvi-122659	Trichoderma virens	87.07	4.00e-55	204.00
IUUC-Tme-126994	Tuber melanosporum	86.39	1.00e-51	193.00
IUUC-Vda-129762	Verticillium dahliae	87.76	3.00e-53	198.00
IUUC-Vvi-131376	Vitis vinifera	86.39	7.00e-55	204.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence