iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Tru-118648

UUCD1 version

UUC-TaR-00812

Ensembl Protein ID

ENSTRUP00000038299.1

UniProt Accession

H2UMX8; H2UMX8_TAKRU

Protein Name

Uncharacterized protein

Gene Name

chd3

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSTRUG00000014990.1	ENSTRUT00000038436.1	ENSTRUP00000038299.1
ENSTRUG00000014990.1	ENSTRUT00000038437.1	ENSTRUP00000038300.1
ENSTRUG00000014990.1	ENSTRUT00000038438.1	ENSTRUP00000038301.1
ENSTRUG00000014990.1	ENSTRUT00000038439.1	ENSTRUP00000038302.1
ENSTRUG00000014990.1	ENSTRUT00000038440.1	ENSTRUP00000038303.1
ENSTRUG00000014990.1	ENSTRUT00000038441.1	ENSTRUP00000038304.1
ENSTRUG00000014990.1	ENSTRUT00000038442.1	ENSTRUP00000038305.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	8.80e-17	62.3	423	468

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 2    kvClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCrs 53
           ++C vC++gge    ++ C+ C +++H  Cl+++  ++ p+ + w Cp C++
   Q: 423  DYCEVCQQGGE----IILCDTCPRAYHLVCLEPE-LDKAPEGK-WSCPHCEK 468
           79*********....9******************.*******7.******86 PP

Organism

Takifugu rubripes

Protein Sequence
(Fasta)

MSSPLRSCEE DEGMVVNSEG GDFDEDDDDG DPDENASDIN SPAAPRETAT PAAPGTKRRH 60
MFHTPPPLHL PPPPHRYPWT ITPSRPLLAL VPVKKGRPKK KKDGKNKEGK PVKTKKRKKI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCATCTC CTCTCCGCTC CTGCGAGGAA GACGAGGGCA TGGTGGTTAA TTCCGAGGGA 60
GGAGATTTTG ATGAAGACGA CGACGACGGA GACCCAGACG AGAACGCAAG CGACATAAAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR028722--CHD3
IPR012957--CHD_C2
IPR012958--CHD_N
IPR000953--Chromo/chromo_shadow_dom
IPR023780--Chromo_domain
IPR016197--Chromodomain-like
IPR002464--DNA/RNA_helicase_DEAH_CS
IPR009462--DUF1086
IPR009463--DUF1087
IPR014001--Helicase_ATP-bd
IPR001650--Helicase_C
IPR009071--HMG_box_dom
IPR027417--P-loop_NTPase
IPR000330--SNF2_N
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50013--CHROMO_2
PS00690--DEAH_ATP_HELICASE
PS51192--HELICASE_ATP_BIND_1
PS51194--HELICASE_CTER
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF08074--CHDCT2
PF08073--CHDNT
PF00385--Chromo
PF06461--DUF1086
PF06465--DUF1087
PF00271--Helicase_C
PF00628--PHD
PF00176--SNF2_N

SMART

SM00298--CHROMO
SM00487--DEXDc
SM01146--DUF1086
SM01147--DUF1087
SM00490--HELICc
SM00249--PHD

Gene Ontology

GO:0016581--C:NuRD complex
GO:0005524--F:ATP binding
GO:0008026--F:ATP-dependent helicase activity
GO:0003677--F:DNA binding
GO:0008270--F:zinc ion binding
GO:0007417--P:central nervous system development
GO:0051297--P:centrosome organization
GO:0006325--P:chromatin organization
GO:0048589--P:developmental growth
GO:0006355--P:regulation of transcription, DNA-templated
GO:0007051--P:spindle organization

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aca-004560	Anolis carolinensis	77.67	0.00e+00	2003.00
IUUC-Aly-005645	Arabidopsis lyrata	39.78	5.00e-155	543.00
IUUC-Ath-007406	Arabidopsis thaliana	40.99	9.00e-159	555.00
IUUC-Ame-011352	Astyanax mexicanus	84.86	0.00e+00	2248.00
IUUC-Bta-012868	Bos taurus	74.10	0.00e+00	2447.00
IUUC-Bol-016073	Brassica oleracea	41.58	8.00e-161	562.00
IUUC-Bra-016724	Brassica rapa	41.70	6.00e-161	562.00
IUUC-Cja-019018	Callithrix jacchus	77.22	0.00e+00	2002.00
IUUC-Cfa-021055	Canis familiaris	73.52	0.00e+00	2434.00
IUUC-Cpo-021523	Cavia porcellus	72.30	0.00e+00	2455.00
IUUC-Csa-024136	Chlorocebus sabaeus	74.00	0.00e+00	2411.00
IUUC-Dre-028043	Danio rerio	84.38	0.00e+00	2196.00
IUUC-Dor-030167	Dipodomys ordii	74.75	0.00e+00	2008.00
IUUC-Ete-032757	Echinops telfairi	70.02	0.00e+00	2188.00
IUUC-Fca-036043	Felis catus	73.82	0.00e+00	2431.00
IUUC-Gmo-038957	Gadus morhua	85.35	0.00e+00	1587.00
IUUC-Gac-041375	Gasterosteus aculeatus	80.50	0.00e+00	2958.00
IUUC-Ggo-045538	Gorilla gorilla	73.42	0.00e+00	2430.00
IUUC-Hsa-045916	Homo sapiens	73.47	0.00e+00	2419.00
IUUC-Itr-048463	Ictidomys tridecemlineatus	74.54	0.00e+00	2416.00
IUUC-Lch-050343	Latimeria chalumnae	75.51	0.00e+00	1974.00
IUUC-Loc-052383	Lepisosteus oculatus	80.98	0.00e+00	2149.00
IUUC-Laf-053870	Loxodonta africana	77.83	0.00e+00	2283.00
IUUC-Meu-056292	Macropus eugenii	64.92	0.00e+00	932.00
IUUC-Mmr-061223	Microcebus murinus	72.23	0.00e+00	2415.00
IUUC-Mmu-063920	Mus musculus	73.47	0.00e+00	2422.00
IUUC-Mpu-065809	Mustela putorius furo	76.50	0.00e+00	2295.00
IUUC-Mlu-067355	Myotis lucifugus	72.45	0.00e+00	2453.00
IUUC-Nle-069842	Nomascus leucogenys	73.65	0.00e+00	2377.00
IUUC-Opr-070960	Ochotona princeps	72.72	0.00e+00	2410.00
IUUC-Ont-072235	Oreochromis niloticus	90.63	0.00e+00	2480.00
IUUC-Ocu-074438	Oryctolagus cuniculus	70.46	0.00e+00	2305.00
IUUC-Ola-086491	Oryzias latipes	77.21	0.00e+00	2126.00
IUUC-Oga-088374	Otolemur garnettii	73.56	0.00e+00	2439.00
IUUC-Oar-089784	Ovis aries	73.38	0.00e+00	2421.00
IUUC-Ptr-090799	Pan troglodytes	73.47	0.00e+00	2429.00
IUUC-Ppa-095381	Physcomitrella patens	41.74	0.00e+00	736.00
IUUC-Pab-098174	Pongo abelii	70.25	0.00e+00	2297.00
IUUC-Rno-104884	Rattus norvegicus	73.52	0.00e+00	2373.00
IUUC-Smo-108946	Selaginella moellendorffii	40.14	2.00e-160	561.00
IUUC-Sly-110976	Solanum lycopersicum	41.78	0.00e+00	734.00
IUUC-Ssc-115751	Sus scrofa	73.94	0.00e+00	2438.00
IUUC-Tni-120039	Tetraodon nigroviridis	93.03	0.00e+00	2561.00
IUUC-Tbe-128117	Tupaia belangeri	75.56	0.00e+00	1001.00
IUUC-Vpa-130209	Vicugna pacos	89.16	7.00e-166	578.00
IUUC-Xtr-132833	Xenopus tropicalis	67.82	0.00e+00	2253.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence