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Tag Content
iUUCD ID IUUC-Tca-121232
Ensembl Protein ID EOY27406
UniProt Accession A0A061GCU2; A0A061GCU2_THECC
Genbank Protein ID EOY27406.1
Protein Name RING-H2 finger protein ATL3, putative
Genbank Nucleotide ID CM001884
Gene Name TCM_029257
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
TCM_029257 EOY27406 EOY27406
Status Unreviewed
Classification
Family E-Value Score Start End
E3 activity/RING/RING 4.20e-08 34.5 104 146
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 activity/RING/RING

   S: 1    CaiCledf...kdgplvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
    Ca+Cl+++ ++ ++lp C+H fh dC+ +w + + +CPlCr
   Q: 104 CAVCLSELvegEK-ARLLPkCNHGFHVDCIDMW------FQSHSTCPLCR 146
    ********77544.899999*************......9999******8 PP
   

Organism Theobroma cacao
Protein Sequence
(Fasta)
MDKPGFDEST AVAITGKIMV IAIIVLFLVV VFVLFLHLYA KWFWWRIEEP TPPPSRRNRR 60
RFVFAPGQDT AHPLRATKGL DPTILASLPV LMFRQEEFKD GLECAVCLSE LVEGEKARLL 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Tca-121232|E3,RING|Theobroma cacao
Please wait for a moment...
Nucleotide Sequence
(Fasta)
GGAGTCAGAA AGTTGGACCC AAGTAGCGTC ATCTTCTTCA CTTGTTGCAG CTCAACCCCC 60
CTCCCCAACC TCTCTCAATA GCAAAGTCCA AAAAAATCTC TCTTTCTTTA ATTCTTTCTA 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Tca-121232|E3,RING|Theobroma cacao
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0008270--F:zinc ion binding

KEGG tcc:TCM_029257
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Atr-003085 Amborella trichopoda 39.76 6.00e-35 140.00
IUUC-Aly-005421 Arabidopsis lyrata 47.46 3.00e-54 204.00
IUUC-Ath-006957 Arabidopsis thaliana 46.18 3.00e-51 194.00
IUUC-Bdi-014880 Brachypodium distachyon 47.37 1.00e-26 112.00
IUUC-Bol-015888 Brassica oleracea 49.77 8.00e-43 166.00
IUUC-Bra-016720 Brassica rapa 49.77 2.00e-42 165.00
IUUC-Gma-043714 Glycine max 52.15 2.00e-57 214.00
IUUC-Hvu-047652 Hordeum vulgare 41.88 5.00e-28 117.00
IUUC-Lpe-051092 Leersia perrieri 42.86 3.00e-20 91.70
IUUC-Mtr-058409 Medicago truncatula 60.66 5.00e-55 207.00
IUUC-Mac-065123 Musa acuminata 43.72 2.00e-37 148.00
IUUC-Ont-072086 Oreochromis niloticus 37.63 9.00e-15 74.70
IUUC-Oba-074984 Oryza barthii 51.46 3.00e-25 108.00
IUUC-Obr-076471 Oryza brachyantha 44.34 8.00e-21 92.80
IUUC-Ogl-077250 Oryza glaberrima 51.46 3.00e-25 108.00
IUUC-Ogu-078929 Oryza glumaepatula 51.46 3.00e-25 108.00
IUUC-Oin-079559 Oryza indica 51.46 3.00e-25 108.00
IUUC-Ome-081596 Oryza meridionalis 48.57 2.00e-22 99.00
IUUC-Oni-082758 Oryza nivara 49.11 2.00e-25 108.00
IUUC-Opu-083878 Oryza punctata 53.21 5.00e-26 110.00
IUUC-Oru-084427 Oryza rufipogon 51.46 3.00e-25 108.00
IUUC-Osa-086236 Oryza sativa 51.46 3.00e-25 108.00
IUUC-Pop-099883 Populus trichocarpa 54.86 2.00e-53 201.00
IUUC-Pca-100143 Procavia capensis 37.37 2.00e-14 73.90
IUUC-Ppe-101738 Prunus persica 66.30 4.00e-51 193.00
IUUC-Sit-109688 Setaria italica 34.96 7.00e-16 77.00
IUUC-Sly-110862 Solanum lycopersicum 48.78 2.00e-47 181.00
IUUC-Stu-112429 Solanum tuberosum 46.89 4.00e-49 187.00
IUUC-Sbi-114427 Sorghum bicolor 41.84 6.00e-31 127.00
IUUC-Tae-125140 Triticum aestivum 43.75 4.00e-29 121.00
IUUC-Tur-126264 Triticum urartu 39.84 4.00e-26 110.00
IUUC-Vvi-131354 Vitis vinifera 57.04 1.00e-60 225.00
Created Date 25-Jun-2017

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