iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ncr-068767

Ensembl Protein ID

EAA35262

UniProt Accession

Q7SEM3; ERB1_NEUCR

Genbank Protein ID

EAA35262.1

Protein Name

Ribosome biogenesis protein erb1; Eukaryotic ribosome biogenesis protein 1

Genbank Nucleotide ID

CM002236

Gene Name

erb1; NCU03321

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
NCU03321	EAA35262	EAA35262

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.60e-15	55.7	430	467

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvll 36
           gH ++v+++a  ++   ++sG+dDgt++vW+l tg+++
   Q: 430  GHDGRVRSVAIdPTgVAVASGGDDGTVRVWELLTGRQV 467
           8**********9776889****************9987 PP

Organism

Neurospora crassa

Functional Description
(View)

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Protein Sequence
(Fasta)

MGPKATEKKR KVQDAEPESD DEIAPDFDGA LSQSEDEFDS DFDDNEHEQD GEQESGSEAS 60
DDEDEEGSLL SDDIPSDAEG DKAMGKLVLE DEEEELEIEI PGVDPKRPEK DDGDKNYRIE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CGCTGCGACG CTATCTGGGT GTTTTACCAG CAGAAAACAC GCCAAAAATC AACACACATT 60
CACAATGGGG CCAAAAGCCA CCGAGAAGAA GCGAAAGGTC CAGGACGCCG AGCCTGAGTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR028598--BOP1/Erb1
IPR012953--BOP1_N_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08145--BOP1NT
PF00400--WD40

SMART

SM01035--BOP1NT
SM00320--WD40

Gene Ontology

GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0070180--F:large ribosomal subunit rRNA binding
GO:0043021--F:ribonucleoprotein complex binding
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

ncr:NCU03321

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001158	Aegilops tauschii	39.24	4.00e-108	384.00
IUUC-Aml-001507	Ailuropoda melanoleuca	40.25	8.00e-130	455.00
IUUC-Atr-003141	Amborella trichopoda	38.51	3.00e-73	267.00
IUUC-Apl-003545	Anas platyrhynchos	40.91	6.00e-120	422.00
IUUC-Aly-005649	Arabidopsis lyrata	42.48	2.00e-135	474.00
IUUC-Ath-007625	Arabidopsis thaliana	42.63	1.00e-128	451.00
IUUC-Ago-007958	Ashbya gossypii	53.06	0.00e+00	732.00
IUUC-Acl-008344	Aspergillus clavatus	64.80	0.00e+00	834.00
IUUC-Afl-008616	Aspergillus flavus	65.64	0.00e+00	866.00
IUUC-Afu-009083	Aspergillus fumigatus	65.24	0.00e+00	830.00
IUUC-Ani-009365	Aspergillus nidulans	64.71	0.00e+00	858.00
IUUC-Ang-009796	Aspergillus niger	65.10	0.00e+00	852.00
IUUC-Aor-010015	Aspergillus oryzae	65.64	0.00e+00	866.00
IUUC-Ate-010537	Aspergillus terreus	64.33	0.00e+00	862.00
IUUC-Ame-011767	Astyanax mexicanus	52.72	8.00e-71	258.00
IUUC-Bgr-012286	Blumeria graminis	71.02	0.00e+00	967.00
IUUC-Bta-013569	Bos taurus	42.30	2.00e-142	498.00
IUUC-Bci-013820	Botrytis cinerea	74.11	0.00e+00	973.00
IUUC-Bdi-014477	Brachypodium distachyon	41.17	3.00e-137	480.00
IUUC-Bol-016099	Brassica oleracea	42.01	8.00e-134	469.00
IUUC-Bra-017174	Brassica rapa	42.16	2.00e-134	471.00
IUUC-Cel-018201	Caenorhabditis elegans	38.03	5.00e-113	399.00
IUUC-Cja-019009	Callithrix jacchus	39.09	4.00e-121	426.00
IUUC-Cfa-020173	Canis familiaris	39.72	2.00e-130	458.00
IUUC-Cpo-021796	Cavia porcellus	42.77	1.00e-142	498.00
IUUC-Cre-022650	Chlamydomonas reinhardtii	43.27	4.00e-128	449.00
IUUC-Csa-023440	Chlorocebus sabaeus	43.24	4.00e-149	520.00
IUUC-Cin-025782	Ciona intestinalis	43.25	2.00e-150	524.00
IUUC-Csv-026352	Ciona savignyi	42.07	1.00e-141	494.00
IUUC-Cgl-026393	Colletotrichum gloeosporioides	69.31	0.00e+00	820.00
IUUC-Cne-027004	Cryptococcus neoformans	49.34	0.00e+00	651.00
IUUC-Cme-027242	Cyanidioschyzon merolae	35.75	2.00e-111	395.00
IUUC-Dre-028658	Danio rerio	45.05	2.00e-155	541.00
IUUC-Dno-028883	Dasypus novemcinctus	42.97	2.00e-145	508.00
IUUC-Dor-031031	Dipodomys ordii	42.44	1.00e-146	511.00
IUUC-Dse-031443	Dothistroma septosporum	59.68	0.00e+00	807.00
IUUC-Dme-031786	Drosophila melanogaster	43.80	2.00e-154	538.00
IUUC-Eca-033677	Equus caballus	42.92	4.00e-145	506.00
IUUC-Eeu-035310	Erinaceus europaeus	39.54	1.00e-109	388.00
IUUC-Fca-035888	Felis catus	41.82	4.00e-145	506.00
IUUC-Fal-037438	Ficedula albicollis	42.59	5.00e-118	416.00
IUUC-Fox-037973	Fusarium oxysporum	75.56	0.00e+00	1027.00
IUUC-Fso-038187	Fusarium solani	75.59	0.00e+00	1031.00
IUUC-Gmo-039114	Gadus morhua	42.99	2.00e-140	490.00
IUUC-Ggr-039746	Gaeumannomyces graminis	66.79	0.00e+00	1034.00
IUUC-Gga-040631	Gallus gallus	43.94	6.00e-82	295.00
IUUC-Gac-042582	Gasterosteus aculeatus	44.27	1.00e-146	511.00
IUUC-Gma-044215	Glycine max	43.06	3.00e-141	493.00
IUUC-Ggo-045587	Gorilla gorilla	43.12	8.00e-150	521.00
IUUC-Hsa-046319	Homo sapiens	43.40	9.00e-150	522.00
IUUC-Hvu-047526	Hordeum vulgare	41.73	2.00e-130	457.00
IUUC-Itr-048683	Ictidomys tridecemlineatus	42.61	6.00e-146	509.00
IUUC-Kpa-049221	Komagataella pastoris	49.64	0.00e+00	683.00
IUUC-Lch-049640	Latimeria chalumnae	44.36	5.00e-161	559.00
IUUC-Lpe-051135	Leersia perrieri	41.38	2.00e-68	251.00
IUUC-Loc-051930	Lepisosteus oculatus	44.87	3.00e-158	550.00
IUUC-Lma-053290	Leptosphaeria maculans	66.47	0.00e+00	903.00
IUUC-Laf-053903	Loxodonta africana	39.56	4.00e-120	423.00
IUUC-Mcc-055471	Macaca mulatta	43.40	1.00e-150	525.00
IUUC-Meu-056190	Macropus eugenii	41.35	2.00e-144	504.00
IUUC-Mor-057135	Magnaporthe oryzae	75.11	0.00e+00	996.00
IUUC-Mpo-057475	Magnaporthe poae	72.34	0.00e+00	969.00
IUUC-Mtr-058689	Medicago truncatula	40.38	7.00e-125	439.00
IUUC-Mla-059149	Melampsora laricipopulina	49.10	0.00e+00	629.00
IUUC-Mga-059645	Meleagris gallopavo	38.85	5.00e-47	178.00
IUUC-Mvi-060485	Microbotryum violaceum	48.33	1.00e-158	553.00
IUUC-Mmr-061674	Microcebus murinus	41.59	1.00e-141	495.00
IUUC-Mdo-062973	Monodelphis domestica	41.82	1.00e-148	518.00
IUUC-Mmu-064180	Mus musculus	42.77	8.00e-148	515.00
IUUC-Mac-064535	Musa acuminata	37.72	1.00e-80	292.00
IUUC-Mpu-066406	Mustela putorius furo	43.40	1.00e-150	525.00
IUUC-Mlu-067795	Myotis lucifugus	42.30	2.00e-137	481.00
IUUC-Nfi-068516	Neosartorya fischeri	64.80	0.00e+00	802.00
IUUC-Opr-071084	Ochotona princeps	39.13	3.00e-55	207.00
IUUC-Ont-071614	Oreochromis niloticus	45.11	8.00e-157	545.00
IUUC-Oba-075980	Oryza barthii	41.38	1.00e-68	252.00
IUUC-Obr-076799	Oryza brachyantha	41.51	1.00e-134	471.00
IUUC-Ogl-077134	Oryza glaberrima	41.51	5.00e-130	456.00
IUUC-Ogu-078655	Oryza glumaepatula	39.47	5.00e-122	429.00
IUUC-Oin-079654	Oryza indica	41.51	8.00e-130	455.00
IUUC-Olo-080706	Oryza longistaminata	42.24	1.00e-69	255.00
IUUC-Ome-081716	Oryza meridionalis	41.95	1.00e-69	255.00
IUUC-Oni-082508	Oryza nivara	38.84	4.00e-117	413.00
IUUC-Opu-083707	Oryza punctata	42.24	2.00e-69	254.00
IUUC-Oru-084453	Oryza rufipogon	42.24	1.00e-69	255.00
IUUC-Osa-085811	Oryza sativa	41.35	7.00e-130	456.00
IUUC-Ola-087361	Oryzias latipes	44.96	2.00e-156	544.00
IUUC-Oga-088015	Otolemur garnettii	42.92	1.00e-149	521.00
IUUC-Oar-090058	Ovis aries	50.90	3.00e-48	184.00
IUUC-Ptr-090631	Pan troglodytes	40.89	6.00e-60	222.00
IUUC-Pan-092306	Papio anubis	43.33	5.00e-149	520.00
IUUC-Pma-094622	Petromyzon marinus	43.33	1.00e-155	541.00
IUUC-Pno-094794	Phaeosphaeria nodorum	62.01	0.00e+00	852.00
IUUC-Ppa-095528	Physcomitrella patens	37.39	5.00e-80	290.00
IUUC-Pfo-096682	Poecilia formosa	44.03	7.00e-161	559.00
IUUC-Pab-097939	Pongo abelii	43.40	6.00e-134	469.00
IUUC-Pop-099043	Populus trichocarpa	43.29	5.00e-126	442.00
IUUC-Pca-100333	Procavia capensis	41.35	9.00e-141	492.00
IUUC-Ppe-102078	Prunus persica	41.10	2.00e-129	454.00
IUUC-Pgr-103525	Puccinia graminis	48.51	1.00e-169	588.00
IUUC-Ptt-103929	Puccinia triticina	48.78	1.00e-164	572.00
IUUC-Pte-104029	Pyrenophora teres	66.67	0.00e+00	944.00
IUUC-Pyt-104446	Pyrenophora triticirepentis	66.17	0.00e+00	942.00
IUUC-Rno-105248	Rattus norvegicus	43.40	1.00e-148	518.00
IUUC-Sce-106381	Saccharomyces cerevisiae	52.42	0.00e+00	728.00
IUUC-Sha-106519	Sarcophilus harrisii	42.83	2.00e-152	531.00
IUUC-Sja-107908	Schizosaccharomyces japonicus	46.79	8.00e-162	562.00
IUUC-Spo-108071	Schizosaccharomyces pombe	46.80	4.00e-162	563.00
IUUC-Smo-109604	Selaginella moellendorffii	41.25	2.00e-119	421.00
IUUC-Sit-110551	Setaria italica	42.54	3.00e-132	463.00
IUUC-Sly-110970	Solanum lycopersicum	41.83	2.00e-70	258.00
IUUC-Stu-112593	Solanum tuberosum	41.89	4.00e-136	476.00
IUUC-Sar-113123	Sorex araneus	47.95	2.00e-61	227.00
IUUC-Sbi-113945	Sorghum bicolor	41.76	9.00e-134	468.00
IUUC-Sre-115188	Sporisorium reilianum	44.32	1.00e-164	571.00
IUUC-Ssc-115352	Sus scrofa	42.23	2.00e-146	511.00
IUUC-Tru-117685	Takifugu rubripes	46.11	1.00e-163	568.00
IUUC-Tni-119982	Tetraodon nigroviridis	45.02	4.00e-154	536.00
IUUC-Tca-121664	Theobroma cacao	42.01	1.00e-136	478.00
IUUC-Tre-122229	Trichoderma reesei	71.56	0.00e+00	890.00
IUUC-Tvi-122576	Trichoderma virens	71.79	0.00e+00	907.00
IUUC-Tae-124110	Triticum aestivum	40.94	1.00e-123	434.00
IUUC-Tur-126781	Triticum urartu	38.44	2.00e-104	371.00
IUUC-Tme-127080	Tuber melanosporum	64.37	0.00e+00	872.00
IUUC-Ttr-128514	Tursiops truncatus	39.25	5.00e-90	323.00
IUUC-Uma-129556	Ustilago maydis	44.64	9.00e-159	552.00
IUUC-Vda-129715	Verticillium dahliae	67.64	0.00e+00	1011.00
IUUC-Vvi-131211	Vitis vinifera	41.02	1.00e-125	442.00
IUUC-Xma-133883	Xiphophorus maculatus	43.57	2.00e-156	544.00
IUUC-Yli-134438	Yarrowia lipolytica	51.90	0.00e+00	682.00
IUUC-Zma-135341	Zea mays	38.13	3.00e-123	434.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence