iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sbi-114706

Ensembl Protein ID

Sb03g006550.1

UniProt Accession

C5XQ48; C5XQ48_SORBI

Genbank Protein ID

EES00342.2

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000762

Gene Name

SORBI_003G077600

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb03g006550	Sb03g006550.1	Sb03g006550.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.80e-12	47.8	193	224

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd..tllvsGsdDgtikvWDl 30
           H+ +vtcl+f ++  + l+sG   g + +WD+
   Q: 193  HQRRVTCLEFhPTknNVLLSGDKKGLLGIWDY 224
           999********444699**************7 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MGPTTGSRFV YNRRRRGGRH AVEEASDEEE QRVDSSSSSS DEEGDEEEDA EASGEDIDDE 60
EEEEAVAAEP AAKQSPAAAE TGEKRGGRKG PISISLKKVC KVCKRTGHQA GFQGAVYIDC 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGGACCCA CAACCGGCTC CCGCTTCGTC TACAATCGCC GCCGCCGAGG CGGGCGGCAC 60
GCCGTCGAGG AGGCTTCCGA CGAGGAGGAG CAGCGGGTGG ATAGCTCCTC CTCATCCTCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR033312--DDB2
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR001878--Znf_CCHC

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:0005634--C:nucleus
GO:0003684--F:damaged DNA binding
GO:0006281--P:DNA repair

KEGG

sbi:SORBI_03g006490

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000470	Aegilops tauschii	83.64	0.00e+00	812.00
IUUC-Aml-002203	Ailuropoda melanoleuca	27.41	9.00e-25	107.00
IUUC-Atr-002957	Amborella trichopoda	61.15	2.00e-180	624.00
IUUC-Apl-003832	Anas platyrhynchos	27.49	1.00e-31	130.00
IUUC-Aca-004358	Anolis carolinensis	29.36	3.00e-32	132.00
IUUC-Aly-006296	Arabidopsis lyrata	62.79	4.00e-170	590.00
IUUC-Ath-007115	Arabidopsis thaliana	61.86	1.00e-171	595.00
IUUC-Ame-010817	Astyanax mexicanus	29.59	8.00e-36	144.00
IUUC-Bta-012914	Bos taurus	28.53	5.00e-28	117.00
IUUC-Bdi-014261	Brachypodium distachyon	84.63	0.00e+00	842.00
IUUC-Bol-015317	Brassica oleracea	61.15	1.00e-169	588.00
IUUC-Bra-016848	Brassica rapa	61.82	2.00e-170	591.00
IUUC-Cja-018967	Callithrix jacchus	27.95	1.00e-26	113.00
IUUC-Cfa-021238	Canis familiaris	26.99	2.00e-23	102.00
IUUC-Cpo-022063	Cavia porcellus	27.86	3.00e-26	111.00
IUUC-Csa-023382	Chlorocebus sabaeus	27.64	1.00e-25	109.00
IUUC-Dre-028732	Danio rerio	29.43	1.00e-28	119.00
IUUC-Dor-030461	Dipodomys ordii	31.98	1.00e-23	103.00
IUUC-Ete-033038	Echinops telfairi	27.69	1.00e-25	109.00
IUUC-Eca-033772	Equus caballus	28.44	3.00e-25	108.00
IUUC-Eeu-035234	Erinaceus europaeus	31.58	6.00e-13	68.60
IUUC-Fca-036095	Felis catus	26.40	2.00e-22	99.80
IUUC-Gmo-039683	Gadus morhua	29.47	2.00e-35	142.00
IUUC-Gga-040530	Gallus gallus	27.64	6.00e-32	131.00
IUUC-Gac-041517	Gasterosteus aculeatus	27.99	1.00e-26	113.00
IUUC-Gma-043378	Glycine max	65.00	0.00e+00	644.00
IUUC-Ggo-045364	Gorilla gorilla	28.26	1.00e-26	113.00
IUUC-Hsa-046354	Homo sapiens	28.26	1.00e-26	113.00
IUUC-Hvu-047151	Hordeum vulgare	77.65	4.00e-146	509.00
IUUC-Itr-048304	Ictidomys tridecemlineatus	28.26	5.00e-27	114.00
IUUC-Lpe-051256	Leersia perrieri	80.46	0.00e+00	811.00
IUUC-Loc-052398	Lepisosteus oculatus	27.64	1.00e-30	126.00
IUUC-Laf-053562	Loxodonta africana	27.57	3.00e-26	112.00
IUUC-Mcc-055197	Macaca mulatta	27.74	1.00e-22	99.80
IUUC-Meu-056151	Macropus eugenii	39.75	1.00e-24	105.00
IUUC-Mtr-057940	Medicago truncatula	66.82	0.00e+00	648.00
IUUC-Mga-059923	Meleagris gallopavo	27.91	7.00e-32	130.00
IUUC-Mmr-061465	Microcebus murinus	27.74	1.00e-21	96.70
IUUC-Mdo-063063	Monodelphis domestica	29.63	8.00e-33	133.00
IUUC-Mmu-064294	Mus musculus	28.74	7.00e-28	117.00
IUUC-Mac-065598	Musa acuminata	66.16	0.00e+00	656.00
IUUC-Mpu-066831	Mustela putorius furo	26.09	2.00e-22	99.40
IUUC-Mlu-067222	Myotis lucifugus	28.26	6.00e-26	110.00
IUUC-Nle-069581	Nomascus leucogenys	27.95	1.00e-26	113.00
IUUC-Opr-070644	Ochotona princeps	29.36	9.00e-29	120.00
IUUC-Ont-072605	Oreochromis niloticus	26.05	4.00e-30	124.00
IUUC-Oan-072973	Ornithorhynchus anatinus	30.12	2.00e-31	129.00
IUUC-Ocu-074615	Oryctolagus cuniculus	27.73	2.00e-27	115.00
IUUC-Oba-075283	Oryza barthii	75.59	0.00e+00	788.00
IUUC-Obr-076605	Oryza brachyantha	74.61	0.00e+00	839.00
IUUC-Ogl-077512	Oryza glaberrima	76.45	0.00e+00	805.00
IUUC-Ogu-078329	Oryza glumaepatula	75.76	0.00e+00	788.00
IUUC-Oin-079980	Oryza indica	80.43	0.00e+00	779.00
IUUC-Olo-080516	Oryza longistaminata	82.21	0.00e+00	750.00
IUUC-Ome-081415	Oryza meridionalis	79.92	0.00e+00	792.00
IUUC-Oni-082985	Oryza nivara	80.43	0.00e+00	779.00
IUUC-Opu-084159	Oryza punctata	82.00	0.00e+00	816.00
IUUC-Oru-085137	Oryza rufipogon	81.57	0.00e+00	801.00
IUUC-Osa-085614	Oryza sativa	81.57	0.00e+00	800.00
IUUC-Ola-087044	Oryzias latipes	26.02	7.00e-29	120.00
IUUC-Oga-088274	Otolemur garnettii	27.95	1.00e-25	109.00
IUUC-Oar-089826	Ovis aries	28.23	1.00e-27	116.00
IUUC-Ptr-091631	Pan troglodytes	28.26	1.00e-26	113.00
IUUC-Pan-092535	Papio anubis	27.64	2.00e-26	112.00
IUUC-Psi-093815	Pelodiscus sinensis	27.57	6.00e-30	124.00
IUUC-Pma-094474	Petromyzon marinus	30.91	3.00e-32	131.00
IUUC-Ppa-095414	Physcomitrella patens	55.92	5.00e-154	536.00
IUUC-Pfo-096559	Poecilia formosa	27.02	2.00e-30	125.00
IUUC-Pab-098528	Pongo abelii	27.95	2.00e-26	112.00
IUUC-Pop-100064	Populus trichocarpa	66.30	0.00e+00	659.00
IUUC-Pca-100803	Procavia capensis	27.10	5.00e-26	111.00
IUUC-Ppe-101966	Prunus persica	63.58	0.00e+00	632.00
IUUC-Pva-103213	Pteropus vampyrus	28.26	3.00e-26	112.00
IUUC-Rno-105087	Rattus norvegicus	28.79	1.00e-28	119.00
IUUC-Sha-107466	Sarcophilus harrisii	30.56	1.00e-32	133.00
IUUC-Smo-108958	Selaginella moellendorffii	57.37	6.00e-156	543.00
IUUC-Sit-109968	Setaria italica	90.38	0.00e+00	840.00
IUUC-Sly-111495	Solanum lycopersicum	60.65	1.00e-167	582.00
IUUC-Sar-113272	Sorex araneus	28.62	2.00e-27	115.00
IUUC-Ssc-115437	Sus scrofa	28.44	1.00e-24	106.00
IUUC-Tgu-116602	Taeniopygia guttata	29.57	6.00e-30	124.00
IUUC-Tru-118698	Takifugu rubripes	28.06	7.00e-25	107.00
IUUC-Tsy-119027	Tarsius syrichta	27.56	9.00e-19	87.00
IUUC-Tni-119787	Tetraodon nigroviridis	26.10	7.00e-32	130.00
IUUC-Tca-121447	Theobroma cacao	64.51	0.00e+00	630.00
IUUC-Tae-123253	Triticum aestivum	83.33	0.00e+00	838.00
IUUC-Tur-126724	Triticum urartu	83.74	0.00e+00	823.00
IUUC-Tbe-127680	Tupaia belangeri	26.16	1.00e-18	86.70
IUUC-Vvi-131001	Vitis vinifera	65.94	0.00e+00	650.00
IUUC-Xtr-132266	Xenopus tropicalis	29.20	1.00e-34	139.00
IUUC-Xma-133034	Xiphophorus maculatus	27.30	1.00e-29	123.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence