iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	4.40e-08	34.4	12	60

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlp......CgHvfhadClqkw.pglknssskefrCPlCr 46
           C+iC+ed+k  p+v +      CgHvfh+ Clq+w  + +  s ++ +CP+C+
   Q: 12   CSICYEDLK--PVVENlqsisaCGHVFHELCLQQWfEYCP--STNKRNCPICK 60
           ********4..44422334556*************55555..999999****6 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MAEENAAGNA ICSICYEDLK PVVENLQSIS ACGHVFHELC LQQWFEYCPS TNKRNCPICK 60
QKCSLKDPCR LYFQSSGNQT DSIASDKVVG IEEDPVLLRG EVKRLEGKVQ NLTSALEAKK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CGCGCCATGT GTTTGCTCTC TGATATTTGC CTTTTGATTT TCTCGAGAAG AAAATGGTGA 60
CTGTGTCGGA AACTGACTAG TCGGTGATTG CCGGAGAGAT AGCTATGGCC GAAGAAAACG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0008270--F:zinc ion binding

KEGG

ath:AT4G01270

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002646	Amborella trichopoda	36.20	7.00e-68	250.00
IUUC-Aly-005550	Arabidopsis lyrata	89.54	0.00e+00	868.00
IUUC-Bdi-014334	Brachypodium distachyon	41.80	9.00e-54	204.00
IUUC-Bol-015839	Brassica oleracea	74.07	0.00e+00	716.00
IUUC-Bra-017106	Brassica rapa	72.92	0.00e+00	708.00
IUUC-Cho-025016	Choloepus hoffmanni	34.38	6.00e-07	47.80
IUUC-Gma-042775	Glycine max	58.15	7.00e-72	264.00
IUUC-Hvu-047625	Hordeum vulgare	42.66	9.00e-56	210.00
IUUC-Lpe-051238	Leersia perrieri	38.13	1.00e-49	190.00
IUUC-Loc-052668	Lepisosteus oculatus	37.50	5.00e-08	51.20
IUUC-Mtr-058033	Medicago truncatula	57.44	5.00e-83	301.00
IUUC-Mdo-061826	Monodelphis domestica	34.38	5.00e-07	47.80
IUUC-Mac-064444	Musa acuminata	35.74	7.00e-73	267.00
IUUC-Ont-071973	Oreochromis niloticus	24.00	2.00e-09	56.20
IUUC-Oba-075193	Oryza barthii	42.01	4.00e-47	182.00
IUUC-Ogl-077006	Oryza glaberrima	43.69	9.00e-48	184.00
IUUC-Ogu-078240	Oryza glumaepatula	41.82	3.00e-45	176.00
IUUC-Oin-079866	Oryza indica	43.69	5.00e-52	198.00
IUUC-Olo-081029	Oryza longistaminata	42.01	3.00e-46	179.00
IUUC-Ome-081703	Oryza meridionalis	41.67	2.00e-44	173.00
IUUC-Oni-082490	Oryza nivara	41.82	2.00e-45	176.00
IUUC-Opu-083315	Oryza punctata	37.23	3.00e-44	172.00
IUUC-Oru-084228	Oryza rufipogon	43.34	8.00e-50	191.00
IUUC-Osa-085981	Oryza sativa	43.69	4.00e-52	198.00
IUUC-Ppa-095896	Physcomitrella patens	37.40	9.00e-56	210.00
IUUC-Pab-098579	Pongo abelii	34.38	6.00e-07	47.80
IUUC-Pop-099603	Populus trichocarpa	47.32	5.00e-114	404.00
IUUC-Ppe-101994	Prunus persica	42.82	3.00e-60	225.00
IUUC-Sit-109687	Setaria italica	44.44	3.00e-43	169.00
IUUC-Sly-111145	Solanum lycopersicum	43.01	8.00e-89	320.00
IUUC-Stu-112328	Solanum tuberosum	57.24	5.00e-80	291.00
IUUC-Sar-113163	Sorex araneus	34.38	6.00e-07	47.80
IUUC-Sbi-114760	Sorghum bicolor	39.02	2.00e-40	159.00
IUUC-Sre-115057	Sporisorium reilianum	24.41	3.00e-07	49.70
IUUC-Tru-117753	Takifugu rubripes	25.26	2.00e-08	53.10
IUUC-Tsy-118809	Tarsius syrichta	39.44	4.00e-07	48.10
IUUC-Tca-121056	Theobroma cacao	58.08	1.00e-71	263.00
IUUC-Tur-126115	Triticum urartu	41.56	5.00e-54	206.00
IUUC-Vpa-130356	Vicugna pacos	37.50	8.00e-07	47.00
IUUC-Vvi-130955	Vitis vinifera	60.36	2.00e-80	292.00
IUUC-Xma-133304	Xiphophorus maculatus	25.97	3.00e-09	55.80

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence