iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pab-098629

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Nucleoporin SEH1

Genbank Nucleotide ID

ABGA01347976

Gene Name

SEH1L

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSPPYG00000008982.2	ENSPPYT00000010478.2	ENSPPYP00000010077.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.40e-21	75.0	11	40

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sdtllvsGsdDgtikvWD 29
           H+d +++++f  ++++++++s D ++kvWD
   Q: 11   HKDLIHDVSFdfHGRRMATCSSDQSVKVWD 40
           9*********976599************** PP

Organism

Pongo abelii

Protein Sequence
(Fasta)

MFVARSIAAD HKDLIHDVSF DFHGRRMATC SSDQSVKVWD KSESGDWHCT ASWKTHSGSV 60
WRVTWAHPEF GQVLASCSFD RTAAVWEEIV GESNDKLRGQ SHWVKRTTLV DSRTSVTDVK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGCGGGGCTT GACGGGCCTG GGGGTGGGGC GAGTTATGAC GGGCCGGGGC GTGGGCAGGG 60
CTTGAGGGTC CAGGGGACTG CGTGGGGCCT GACGGGCCGG TGGGTGGGGC GGGGCTTGAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0061700--C:GATOR2 complex
GO:0000776--C:kinetochore
GO:0031080--C:nuclear pore outer ring
GO:0051315--P:attachment of mitotic spindle microtubules to kinetochore
GO:0034629--P:cellular protein complex localization
GO:0034198--P:cellular response to amino acid starvation
GO:0002534--P:cytokine production involved in inflammatory response
GO:0050830--P:defense response to Gram-positive bacterium
GO:0006999--P:nuclear pore organization
GO:1904263--P:positive regulation of TORC1 signaling

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001926	Ailuropoda melanoleuca	99.06	0.00e+00	632.00
IUUC-Apl-003654	Anas platyrhynchos	94.38	3.00e-172	597.00
IUUC-Aca-004378	Anolis carolinensis	90.97	2.00e-168	585.00
IUUC-Ago-007816	Ashbya gossypii	32.94	3.00e-50	191.00
IUUC-Ame-011945	Astyanax mexicanus	85.52	5.00e-173	600.00
IUUC-Bta-013306	Bos taurus	98.61	0.00e+00	662.00
IUUC-Cel-018235	Caenorhabditis elegans	42.31	5.00e-75	274.00
IUUC-Cja-018849	Callithrix jacchus	99.16	0.00e+00	653.00
IUUC-Cfa-020841	Canis familiaris	90.78	0.00e+00	628.00
IUUC-Cpo-021379	Cavia porcellus	96.94	0.00e+00	652.00
IUUC-Csa-023900	Chlorocebus sabaeus	99.44	0.00e+00	658.00
IUUC-Cho-024660	Choloepus hoffmanni	97.18	5.00e-179	619.00
IUUC-Cin-025471	Ciona intestinalis	57.10	5.00e-104	370.00
IUUC-Csv-026242	Ciona savignyi	59.76	2.00e-89	321.00
IUUC-Dre-028068	Danio rerio	83.29	0.00e+00	628.00
IUUC-Dno-029981	Dasypus novemcinctus	91.02	6.00e-173	600.00
IUUC-Dme-031763	Drosophila melanogaster	58.23	1.00e-112	399.00
IUUC-Ete-032243	Echinops telfairi	62.64	5.00e-118	417.00
IUUC-Eca-033425	Equus caballus	98.45	2.00e-168	584.00
IUUC-Eeu-035119	Erinaceus europaeus	77.89	6.00e-118	417.00
IUUC-Fca-036520	Felis catus	98.84	0.00e+00	679.00
IUUC-Fal-037234	Ficedula albicollis	94.69	3.00e-176	613.00
IUUC-Gmo-039013	Gadus morhua	86.59	4.00e-178	616.00
IUUC-Gga-041059	Gallus gallus	94.96	0.00e+00	674.00
IUUC-Gac-041337	Gasterosteus aculeatus	86.03	6.00e-173	599.00
IUUC-Ggo-044944	Gorilla gorilla	100.00	0.00e+00	711.00
IUUC-Hsa-046038	Homo sapiens	99.72	0.00e+00	709.00
IUUC-Hvu-047455	Hordeum vulgare	30.70	2.00e-35	142.00
IUUC-Itr-048858	Ictidomys tridecemlineatus	99.06	4.00e-167	580.00
IUUC-Kpa-049201	Komagataella pastoris	36.56	1.00e-50	192.00
IUUC-Lch-050466	Latimeria chalumnae	79.75	1.00e-178	619.00
IUUC-Loc-052773	Lepisosteus oculatus	76.08	6.00e-171	593.00
IUUC-Laf-053409	Loxodonta africana	97.50	0.00e+00	656.00
IUUC-Meu-055958	Macropus eugenii	71.03	6.00e-125	440.00
IUUC-Mga-059348	Meleagris gallopavo	94.14	9.00e-174	602.00
IUUC-Mmr-060977	Microcebus murinus	99.18	3.00e-135	473.00
IUUC-Mdo-061806	Monodelphis domestica	96.12	0.00e+00	690.00
IUUC-Mmu-064328	Mus musculus	96.39	0.00e+00	676.00
IUUC-Mpu-066873	Mustela putorius furo	99.38	0.00e+00	632.00
IUUC-Mlu-067563	Myotis lucifugus	91.67	0.00e+00	650.00
IUUC-Nle-068977	Nomascus leucogenys	100.00	0.00e+00	663.00
IUUC-Opr-070773	Ochotona princeps	65.31	9.00e-89	320.00
IUUC-Ont-072644	Oreochromis niloticus	86.87	5.00e-178	616.00
IUUC-Oan-073098	Ornithorhynchus anatinus	95.38	3.00e-168	583.00
IUUC-Ocu-073911	Oryctolagus cuniculus	99.16	0.00e+00	705.00
IUUC-Ola-087096	Oryzias latipes	85.71	2.00e-172	598.00
IUUC-Oga-088798	Otolemur garnettii	98.60	0.00e+00	703.00
IUUC-Oar-090298	Ovis aries	97.83	3.00e-168	587.00
IUUC-Ptr-091074	Pan troglodytes	99.72	0.00e+00	717.00
IUUC-Pan-092013	Papio anubis	100.00	4.00e-143	499.00
IUUC-Psi-093508	Pelodiscus sinensis	93.50	6.00e-174	603.00
IUUC-Pma-094288	Petromyzon marinus	83.81	9.00e-104	369.00
IUUC-Ppa-095228	Physcomitrella patens	32.39	1.00e-37	150.00
IUUC-Pfo-096384	Poecilia formosa	85.75	7.00e-176	609.00
IUUC-Pca-100322	Procavia capensis	73.75	2.00e-112	399.00
IUUC-Pva-102861	Pteropus vampyrus	98.32	0.00e+00	652.00
IUUC-Rno-104895	Rattus norvegicus	89.39	0.00e+00	662.00
IUUC-Sce-106420	Saccharomyces cerevisiae	34.76	2.00e-54	206.00
IUUC-Sha-106829	Sarcophilus harrisii	90.63	0.00e+00	642.00
IUUC-Sja-107923	Schizosaccharomyces japonicus	40.00	8.00e-67	246.00
IUUC-Spo-108184	Schizosaccharomyces pombe	38.44	1.00e-64	239.00
IUUC-Smo-109282	Selaginella moellendorffii	32.91	7.00e-38	150.00
IUUC-Sar-113279	Sorex araneus	98.44	2.00e-166	577.00
IUUC-Sbi-114110	Sorghum bicolor	30.43	2.00e-36	146.00
IUUC-Ssc-115589	Sus scrofa	95.99	3.00e-178	617.00
IUUC-Tgu-117523	Taeniopygia guttata	94.68	0.00e+00	674.00
IUUC-Tru-117985	Takifugu rubripes	83.04	2.00e-158	554.00
IUUC-Tsy-118913	Tarsius syrichta	98.35	4.00e-168	583.00
IUUC-Tni-120670	Tetraodon nigroviridis	86.39	1.00e-177	615.00
IUUC-Tae-122796	Triticum aestivum	30.38	5.00e-35	141.00
IUUC-Tme-126885	Tuber melanosporum	36.69	6.00e-56	211.00
IUUC-Tbe-127344	Tupaia belangeri	78.99	2.00e-137	481.00
IUUC-Ttr-128347	Tursiops truncatus	99.06	4.00e-167	580.00
IUUC-Vpa-130656	Vicugna pacos	98.59	2.00e-159	555.00
IUUC-Xtr-132736	Xenopus tropicalis	91.36	0.00e+00	650.00
IUUC-Xma-133678	Xiphophorus maculatus	86.03	7.00e-177	612.00
IUUC-Yli-134659	Yarrowia lipolytica	40.62	4.00e-63	234.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence