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Tag Content
iUUCD ID IUUC-Mtr-057656
Ensembl Protein ID KEH33520
UniProt Accession A0A072V5R5; A0A072V5R5_MEDTR
Genbank Protein ID KEH33520.1
Protein Name U4/U6 small nuclear ribonucleoprotein PRP4
Genbank Nucleotide ID CM001219
Gene Name MTR_3g045130
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
MTR_3g045130 KEH33520 KEH33520
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 2.70e-32 110.8 438 475
UBD/Beta-Prp 2.30e-50 172.9 271 520
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvll 36
    gH s+ +++f ++ +l++G+ D+t+++WDlr+ ++l
   Q: 438 GHVKSILGISFsPNgYHLATGGEDNTCRIWDLRKKKSL 475
    8999********77799***************987765 PP
   


   UBD/Beta-Prp

   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgk.ilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdk 108
    ++ ++t fs+d++ lat s +g +k+w++ + k++++l+gh++ t+v +sp k l+t+s Drt+k w+ ++g + t+kgh +++ ++f+psg++
   Q: 271 DDRPLTGCSFSRDGKGLATCSFTGATKLWSMPNVKKVSTLKGHTQRATDVAYSPVHKnHLATASADRTAKYWN-DQGALLGTFKGHLERLARIAFHPSGKY 370
    5789999***********************************************8887**************8.7899*********************** PP
   S: 109 lvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdl 209
    l ++s d+t r+wd+et+++l +++gh+++v ++ +h dg+l +s++lD r+Wdl+tg+ + l+g h +s+ +sf++ng +l++g++d+t ++wdl
   Q: 371 LGTASYDKTWRLWDVETEEELL-LQEGHSRSVYGLDFHHDGSLAASCGLDALARVWDLRTGRSVLALEG-HVKSILGISFSPNGYHLATGGEDNTCRIWDL 469
    **********************.*********************************************9.******************************* PP
   S: 210 qtgecvrtlnghtdnvksvrfs.pnderlvsgssDgsiriWdlrsgdllkt 259
    ++++ ++t +h++ +++v+f +++ +lv++s D + ++W r +++kt
   Q: 470 RKKKSLYTIPAHSNLISQVKFEpQEGYFLVTASYDMTAKVWSGRDFKPVKT 520
    **********************77778899999********7776666665 PP
   

Organism Medicago truncatula
Protein Sequence
(Fasta)
MKVEMENSTT TESSVPVSDI QDQNPLVSSQ PTQPPVITPV LPPLAPIPTA PSSLVRPLAP 60
LPIRPPVIRP PVPQNGEVGS SDSDSDDDDG AATRINKGTG EYEISEESRL VRERQEKAMQ 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Mtr-057656|E3,WD_repeat;UBD,Beta-Prp|Medicago truncatula
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ATGAAAGTGG AGATGGAAAA TTCAACAACG ACTGAATCGT CTGTACCTGT TTCTGATATT 60
CAAGATCAAA ACCCTCTAGT TTCGTCCCAG CCAACTCAAC CACCGGTTAT TACTCCTGTC 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Mtr-057656|E3,WD_repeat;UBD,Beta-Prp|Medicago truncatula
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0687--Ribonucleoprotein
KW-0543--Viral nucleoprotein
KW-0946--Virion
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR014906--PRP4-like
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08799--PRP4
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00500--SFM
SM00320--WD40

Gene Ontology

GO:0030529--C:intracellular ribonucleoprotein complex
GO:0019013--C:viral nucleocapsid

KEGG mtr:MTR_3g045130
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001737 Ailuropoda melanoleuca 44.19 1.00e-100 359.00
IUUC-Atr-002828 Amborella trichopoda 71.39 2.00e-166 578.00
IUUC-Apl-003723 Anas platyrhynchos 44.05 3.00e-100 358.00
IUUC-Aca-004972 Anolis carolinensis 43.38 1.00e-97 349.00
IUUC-Aly-006531 Arabidopsis lyrata 68.14 5.00e-151 527.00
IUUC-Ath-007367 Arabidopsis thaliana 68.77 3.00e-168 584.00
IUUC-Ago-007893 Ashbya gossypii 33.09 2.00e-47 182.00
IUUC-Ame-011697 Astyanax mexicanus 43.38 5.00e-101 360.00
IUUC-Bta-012615 Bos taurus 44.19 3.00e-101 361.00
IUUC-Bdi-014302 Brachypodium distachyon 67.25 5.00e-152 530.00
IUUC-Bol-015594 Brassica oleracea 69.91 1.00e-161 562.00
IUUC-Bra-017465 Brassica rapa 69.43 9.00e-161 559.00
IUUC-Cel-018632 Caenorhabditis elegans 35.38 3.00e-62 232.00
IUUC-Cja-019747 Callithrix jacchus 44.19 4.00e-101 361.00
IUUC-Cfa-020288 Canis familiaris 44.19 7.00e-101 360.00
IUUC-Cpo-021440 Cavia porcellus 44.26 7.00e-100 357.00
IUUC-Cre-022716 Chlamydomonas reinhardtii 49.22 6.00e-82 296.00
IUUC-Cho-024481 Choloepus hoffmanni 43.43 3.00e-98 351.00
IUUC-Cin-025106 Ciona intestinalis 38.64 2.00e-84 305.00
IUUC-Csv-026087 Ciona savignyi 40.05 2.00e-85 309.00
IUUC-Cne-026793 Cryptococcus neoformans 40.14 8.00e-82 296.00
IUUC-Dre-028723 Danio rerio 42.89 7.00e-97 347.00
IUUC-Dno-029299 Dasypus novemcinctus 44.19 5.00e-101 360.00
IUUC-Dme-031783 Drosophila melanogaster 41.36 8.00e-77 280.00
IUUC-Ete-032669 Echinops telfairi 44.65 4.00e-102 364.00
IUUC-Eca-033566 Equus caballus 44.19 9.00e-101 360.00
IUUC-Eeu-034524 Erinaceus europaeus 51.46 5.00e-69 254.00
IUUC-Fca-036215 Felis catus 44.19 6.00e-101 360.00
IUUC-Fal-037018 Ficedula albicollis 44.10 2.00e-91 328.00
IUUC-Gga-040797 Gallus gallus 43.96 2.00e-100 358.00
IUUC-Gac-042598 Gasterosteus aculeatus 44.60 3.00e-91 328.00
IUUC-Gma-044097 Glycine max 77.78 0.00e+00 659.00
IUUC-Ggo-044682 Gorilla gorilla 44.03 1.00e-99 356.00
IUUC-Hsa-045804 Homo sapiens 44.19 4.00e-101 361.00
IUUC-Itr-047882 Ictidomys tridecemlineatus 41.84 1.00e-101 363.00
IUUC-Lch-050074 Latimeria chalumnae 42.18 5.00e-88 317.00
IUUC-Lpe-051333 Leersia perrieri 67.52 7.00e-135 473.00
IUUC-Loc-052164 Lepisosteus oculatus 44.06 1.00e-99 356.00
IUUC-Laf-053460 Loxodonta africana 44.19 4.00e-101 360.00
IUUC-Mcc-055859 Macaca mulatta 44.19 6.00e-101 360.00
IUUC-Meu-056134 Macropus eugenii 44.19 3.00e-100 358.00
IUUC-Mla-059145 Melampsora laricipopulina 42.34 2.00e-75 275.00
IUUC-Mga-059855 Meleagris gallopavo 43.83 4.00e-100 357.00
IUUC-Mvi-060372 Microbotryum violaceum 43.84 3.00e-70 258.00
IUUC-Mmr-060826 Microcebus murinus 44.42 3.00e-101 361.00
IUUC-Mdo-062748 Monodelphis domestica 44.65 1.00e-100 359.00
IUUC-Mmu-063351 Mus musculus 44.19 1.00e-100 359.00
IUUC-Mac-064846 Musa acuminata 72.26 7.00e-146 509.00
IUUC-Mpu-066006 Mustela putorius furo 44.19 6.00e-101 360.00
IUUC-Mlu-067722 Myotis lucifugus 44.65 3.00e-101 362.00
IUUC-Nle-069982 Nomascus leucogenys 44.19 4.00e-101 361.00
IUUC-Opr-070596 Ochotona princeps 43.08 7.00e-101 360.00
IUUC-Ont-072374 Oreochromis niloticus 48.12 4.00e-96 344.00
IUUC-Oan-073166 Ornithorhynchus anatinus 47.99 6.00e-83 300.00
IUUC-Ocu-074371 Oryctolagus cuniculus 43.96 2.00e-100 358.00
IUUC-Oba-075083 Oryza barthii 66.35 1.00e-144 506.00
IUUC-Obr-076405 Oryza brachyantha 66.50 2.00e-137 481.00
IUUC-Ogl-077683 Oryza glaberrima 66.04 1.00e-144 505.00
IUUC-Ogu-078486 Oryza glumaepatula 66.35 1.00e-144 505.00
IUUC-Oin-079679 Oryza indica 66.27 8.00e-149 520.00
IUUC-Olo-080243 Oryza longistaminata 66.12 8.00e-124 436.00
IUUC-Ome-081230 Oryza meridionalis 66.11 6.00e-149 520.00
IUUC-Oni-082961 Oryza nivara 66.27 6.00e-149 520.00
IUUC-Opu-083189 Oryza punctata 65.88 1.00e-148 519.00
IUUC-Oru-084353 Oryza rufipogon 67.26 4.00e-143 500.00
IUUC-Osa-085458 Oryza sativa 66.11 6.00e-149 520.00
IUUC-Ola-086940 Oryzias latipes 45.56 1.00e-98 353.00
IUUC-Oga-088703 Otolemur garnettii 42.24 5.00e-94 337.00
IUUC-Oar-089829 Ovis aries 44.42 2.00e-101 362.00
IUUC-Ptr-090838 Pan troglodytes 44.19 4.00e-101 361.00
IUUC-Pan-092261 Papio anubis 44.09 1.00e-99 356.00
IUUC-Psi-093020 Pelodiscus sinensis 43.15 1.00e-98 353.00
IUUC-Ppa-095531 Physcomitrella patens 63.89 2.00e-148 518.00
IUUC-Pfo-096812 Poecilia formosa 42.50 3.00e-77 281.00
IUUC-Pab-097805 Pongo abelii 47.52 5.00e-81 294.00
IUUC-Pca-100152 Procavia capensis 44.19 6.00e-101 360.00
IUUC-Ppe-101244 Prunus persica 76.69 8.00e-156 542.00
IUUC-Pva-102529 Pteropus vampyrus 42.37 1.00e-93 336.00
IUUC-Pgr-103550 Puccinia graminis 45.05 8.00e-81 293.00
IUUC-Ptt-103951 Puccinia triticina 37.03 1.00e-65 243.00
IUUC-Rno-105747 Rattus norvegicus 44.42 5.00e-101 360.00
IUUC-Sce-106418 Saccharomyces cerevisiae 33.50 7.00e-52 197.00
IUUC-Sha-107334 Sarcophilus harrisii 44.19 3.00e-100 358.00
IUUC-Sja-107794 Schizosaccharomyces japonicus 35.80 2.00e-57 216.00
IUUC-Spo-108189 Schizosaccharomyces pombe 39.12 1.00e-71 263.00
IUUC-Ssl-108550 Sclerotinia sclerotiorum 36.57 2.00e-71 262.00
IUUC-Smo-108924 Selaginella moellendorffii 62.80 7.00e-141 493.00
IUUC-Sit-110102 Setaria italica 67.54 3.00e-148 518.00
IUUC-Sly-111668 Solanum lycopersicum 78.77 2.00e-167 581.00
IUUC-Stu-111928 Solanum tuberosum 80.74 6.00e-168 583.00
IUUC-Sar-113266 Sorex araneus 38.27 6.00e-81 294.00
IUUC-Sbi-114134 Sorghum bicolor 67.92 7.00e-150 523.00
IUUC-Sre-115114 Sporisorium reilianum 40.61 2.00e-81 295.00
IUUC-Ssc-115443 Sus scrofa 44.19 8.00e-101 360.00
IUUC-Tgu-117157 Taeniopygia guttata 45.52 7.00e-101 360.00
IUUC-Tru-118587 Takifugu rubripes 46.77 2.00e-97 349.00
IUUC-Tsy-119157 Tarsius syrichta 47.99 2.00e-85 308.00
IUUC-Tni-120427 Tetraodon nigroviridis 46.91 2.00e-98 352.00
IUUC-Tca-121368 Theobroma cacao 82.66 0.00e+00 665.00
IUUC-Tur-126532 Triticum urartu 66.84 4.00e-142 496.00
IUUC-Tme-126951 Tuber melanosporum 35.41 4.00e-63 234.00
IUUC-Tbe-128136 Tupaia belangeri 40.32 1.00e-86 312.00
IUUC-Ttr-129169 Tursiops truncatus 37.13 2.00e-48 186.00
IUUC-Uma-129399 Ustilago maydis 39.35 6.00e-79 287.00
IUUC-Vpa-130440 Vicugna pacos 44.42 4.00e-101 361.00
IUUC-Vvi-131075 Vitis vinifera 77.56 4.00e-163 567.00
IUUC-Yli-134569 Yarrowia lipolytica 37.12 2.00e-64 238.00
Created Date 25-Jun-2017

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