iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Tgu-117157

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

ABQF01048653

Gene Name

PRPF4

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSTGUG00000002623.1	ENSTGUT00000002735.1	ENSTGUP00000002707.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.10e-38	128.0	402	440
UBD/Beta-Prp	1.50e-94	316.4	227	474

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH  ++++++f ++  ++++Gs+D+t+kvWDlr+ +++ 
   Q: 402  GHLKEIYGINFsPNgYHVATGSGDNTCKVWDLRQRKCIY 440
           7999********77799****************999975 PP

UBD/Beta-Prp

   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgk........ilvtgseDrtikvwdlstgkcvht 89
           ++ +++  +fsp+++llat++++g  k+w+v + +l+++l gh+  v a+ f+p++          l++++ D+ +k+w+l++ ++v  
   Q: 227  DDRPLSYCHFSPNSKLLATACWSGLCKLWSVPDCNLVHTLRGHSTNVGAIVFHPKATvsldkkdvSLASCAADGSVKLWNLESDEPVAD 315
           677888899*********************************************998899999999*********************** PP
   S: 90   lkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgg 178
           ++gh+ +v  + ++psg +l ++  d   r+wdle ++++   ++gh++ v  +++h dg+l  +G+lD + r+Wdl+tg+++  l+g 
   Q: 316  IEGHSMRVARVMWHPSGRFLGTTCYDHSWRLWDLEAQEEIL-HQEGHSKGVYDIAFHTDGSLAGTGGLDAFGRVWDLRTGRCIMFLEG- 402
           *****************************************.********************************************99. PP
   S: 179  htdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfs.pnderlvsgssDgsiriW 249
           h + +y ++f++ng ++++gs d+t k+wdl++ +c++t  +h++ v+ vrf  +++++l++g+ D++ +iW
   Q: 403  HLKEIYGINFSPNGYHVATGSGDNTCKVWDLRQRKCIYTIPAHQNLVTGVRFEpNHGNFLLTGAYDNTAKIW 474
           *****************************************************8899*************** PP

Organism

Taeniopygia guttata

Protein Sequence
(Fasta)

AAHQTYSAPP RPKPARGGRG CPASGAPIFY SLEEKERERL AKGETGLLAK EAMKAAMEAG 60
NINISSGEVF DLEDHMSERQ AEVLAEFERR KRARQINVST DDCEVKACLR ALGEPITLFG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCTGCACATC AGACATACTC AGGTGTGTTT GGCAAGGGAG GACTTTGACC CAAGGACGTG 60
AGCTGTATGC TTCAGGGATT GGATGAACCT GCCCTCCAAG CCCACCAGAG AATGATGAGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR002469--Peptidase_S9B_N
IPR014906--PRP4-like
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08799--PRP4
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00500--SFM
SM00320--WD40

Gene Ontology

GO:0015030--C:Cajal body
GO:0016607--C:nuclear speck
GO:0071001--C:U4/U6 snRNP

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000771	Aegilops tauschii	44.29	7.00e-102	363.00
IUUC-Aml-001737	Ailuropoda melanoleuca	90.47	0.00e+00	913.00
IUUC-Atr-002828	Amborella trichopoda	44.87	3.00e-107	381.00
IUUC-Apl-003723	Anas platyrhynchos	95.10	0.00e+00	976.00
IUUC-Aca-004972	Anolis carolinensis	87.50	0.00e+00	899.00
IUUC-Aly-006531	Arabidopsis lyrata	42.70	3.00e-96	345.00
IUUC-Ath-007367	Arabidopsis thaliana	44.57	2.00e-111	395.00
IUUC-Ago-007893	Ashbya gossypii	34.51	8.00e-61	227.00
IUUC-Acl-008236	Aspergillus clavatus	38.45	7.00e-91	327.00
IUUC-Afl-008522	Aspergillus flavus	40.00	1.00e-98	353.00
IUUC-Afu-008904	Aspergillus fumigatus	38.92	1.00e-95	343.00
IUUC-Ani-009198	Aspergillus nidulans	40.00	3.00e-98	351.00
IUUC-Ang-009662	Aspergillus niger	40.45	4.00e-98	351.00
IUUC-Aor-009881	Aspergillus oryzae	40.00	7.00e-99	353.00
IUUC-Ate-010333	Aspergillus terreus	38.92	7.00e-89	320.00
IUUC-Ame-011697	Astyanax mexicanus	80.81	0.00e+00	802.00
IUUC-Bgr-012254	Blumeria graminis	38.54	2.00e-101	362.00
IUUC-Bta-012615	Bos taurus	90.47	0.00e+00	885.00
IUUC-Bci-013720	Botrytis cinerea	39.48	4.00e-101	361.00
IUUC-Bdi-014302	Brachypodium distachyon	45.10	2.00e-109	389.00
IUUC-Bol-015594	Brassica oleracea	44.57	1.00e-100	360.00
IUUC-Bra-017465	Brassica rapa	44.35	5.00e-101	361.00
IUUC-Cel-018632	Caenorhabditis elegans	44.96	8.00e-111	393.00
IUUC-Cja-019747	Callithrix jacchus	90.47	0.00e+00	917.00
IUUC-Cfa-020288	Canis familiaris	90.47	0.00e+00	915.00
IUUC-Cpo-021440	Cavia porcellus	88.87	0.00e+00	902.00
IUUC-Cre-022716	Chlamydomonas reinhardtii	46.22	2.00e-85	308.00
IUUC-Csa-023139	Chlorocebus sabaeus	92.47	0.00e+00	661.00
IUUC-Cho-024481	Choloepus hoffmanni	89.60	0.00e+00	820.00
IUUC-Cin-025106	Ciona intestinalis	60.04	2.00e-176	612.00
IUUC-Csv-026087	Ciona savignyi	60.89	1.00e-176	612.00
IUUC-Cgl-026538	Colletotrichum gloeosporioides	37.95	2.00e-93	337.00
IUUC-Cne-026793	Cryptococcus neoformans	41.29	6.00e-105	374.00
IUUC-Dre-028723	Danio rerio	80.63	0.00e+00	788.00
IUUC-Dno-029299	Dasypus novemcinctus	90.26	0.00e+00	912.00
IUUC-Dor-030345	Dipodomys ordii	63.90	1.00e-73	270.00
IUUC-Dse-031562	Dothistroma septosporum	37.29	1.00e-91	329.00
IUUC-Dme-031783	Drosophila melanogaster	57.17	6.00e-142	496.00
IUUC-Ete-032669	Echinops telfairi	89.66	0.00e+00	910.00
IUUC-Eca-033566	Equus caballus	90.47	0.00e+00	912.00
IUUC-Eeu-034524	Erinaceus europaeus	92.05	3.00e-139	488.00
IUUC-Fca-036215	Felis catus	90.47	0.00e+00	913.00
IUUC-Fal-037018	Ficedula albicollis	98.37	0.00e+00	841.00
IUUC-Fox-037936	Fusarium oxysporum	37.63	2.00e-87	316.00
IUUC-Fso-038366	Fusarium solani	38.72	8.00e-92	330.00
IUUC-Gmo-038966	Gadus morhua	67.79	1.00e-142	498.00
IUUC-Ggr-039942	Gaeumannomyces graminis	36.90	5.00e-85	307.00
IUUC-Gga-040797	Gallus gallus	96.42	0.00e+00	976.00
IUUC-Gac-042598	Gasterosteus aculeatus	70.91	0.00e+00	673.00
IUUC-Gma-044220	Glycine max	45.33	4.00e-103	368.00
IUUC-Ggo-044682	Gorilla gorilla	90.08	0.00e+00	906.00
IUUC-Hsa-045804	Homo sapiens	90.26	0.00e+00	914.00
IUUC-Hvu-047567	Hordeum vulgare	44.32	2.00e-98	352.00
IUUC-Itr-047882	Ictidomys tridecemlineatus	90.06	0.00e+00	914.00
IUUC-Kpa-049369	Komagataella pastoris	33.15	7.00e-61	227.00
IUUC-Lch-050074	Latimeria chalumnae	79.48	0.00e+00	793.00
IUUC-Lpe-051333	Leersia perrieri	43.69	8.00e-100	356.00
IUUC-Loc-052164	Lepisosteus oculatus	82.80	0.00e+00	822.00
IUUC-Lma-053088	Leptosphaeria maculans	36.99	2.00e-84	305.00
IUUC-Laf-053460	Loxodonta africana	90.47	0.00e+00	915.00
IUUC-Mcc-055859	Macaca mulatta	90.47	0.00e+00	913.00
IUUC-Meu-056134	Macropus eugenii	90.06	0.00e+00	912.00
IUUC-Mor-057251	Magnaporthe oryzae	36.81	7.00e-87	314.00
IUUC-Mpo-057375	Magnaporthe poae	40.00	2.00e-53	201.00
IUUC-Mtr-057656	Medicago truncatula	44.27	1.00e-95	343.00
IUUC-Mla-059145	Melampsora laricipopulina	40.66	2.00e-102	365.00
IUUC-Mga-059855	Meleagris gallopavo	95.13	0.00e+00	987.00
IUUC-Mvi-060372	Microbotryum violaceum	43.40	7.00e-96	343.00
IUUC-Mmr-060826	Microcebus murinus	90.47	0.00e+00	911.00
IUUC-Mdo-062748	Monodelphis domestica	89.86	0.00e+00	911.00
IUUC-Mmu-063351	Mus musculus	90.06	0.00e+00	909.00
IUUC-Mac-064846	Musa acuminata	45.39	4.00e-98	351.00
IUUC-Mpu-066006	Mustela putorius furo	90.47	0.00e+00	913.00
IUUC-Mlu-067398	Myotis lucifugus	90.47	0.00e+00	912.00
IUUC-Nfi-068399	Neosartorya fischeri	38.92	2.00e-100	359.00
IUUC-Ncr-068711	Neurospora crassa	37.50	4.00e-93	334.00
IUUC-Nle-069982	Nomascus leucogenys	90.47	0.00e+00	917.00
IUUC-Opr-070596	Ochotona princeps	90.67	0.00e+00	918.00
IUUC-Ont-072374	Oreochromis niloticus	77.78	0.00e+00	760.00
IUUC-Oan-073166	Ornithorhynchus anatinus	90.03	0.00e+00	729.00
IUUC-Ocu-074371	Oryctolagus cuniculus	90.67	0.00e+00	915.00
IUUC-Oba-075083	Oryza barthii	42.86	8.00e-102	363.00
IUUC-Obr-076405	Oryza brachyantha	43.72	4.00e-98	351.00
IUUC-Ogl-077683	Oryza glaberrima	42.86	1.00e-101	362.00
IUUC-Ogu-078486	Oryza glumaepatula	43.08	2.00e-101	362.00
IUUC-Oin-079679	Oryza indica	43.05	1.00e-104	373.00
IUUC-Olo-080243	Oryza longistaminata	42.50	3.00e-90	324.00
IUUC-Ome-081230	Oryza meridionalis	42.86	2.00e-104	372.00
IUUC-Oni-082961	Oryza nivara	42.86	2.00e-104	372.00
IUUC-Opu-083189	Oryza punctata	42.73	1.00e-101	363.00
IUUC-Oru-084353	Oryza rufipogon	43.12	2.00e-102	365.00
IUUC-Osa-085458	Oryza sativa	42.86	2.00e-104	372.00
IUUC-Ola-086940	Oryzias latipes	77.40	0.00e+00	768.00
IUUC-Olu-087580	Ostreococcus lucimarinus	37.31	9.00e-68	250.00
IUUC-Oga-088703	Otolemur garnettii	86.61	0.00e+00	867.00
IUUC-Oar-089829	Ovis aries	90.47	0.00e+00	886.00
IUUC-Ptr-090838	Pan troglodytes	90.26	0.00e+00	914.00
IUUC-Pan-092261	Papio anubis	90.08	0.00e+00	911.00
IUUC-Psi-093020	Pelodiscus sinensis	92.29	0.00e+00	934.00
IUUC-Pno-094858	Phaeosphaeria nodorum	36.34	5.00e-79	288.00
IUUC-Ppa-095531	Physcomitrella patens	45.59	1.00e-115	409.00
IUUC-Pfo-096812	Poecilia formosa	70.74	0.00e+00	676.00
IUUC-Pab-097805	Pongo abelii	80.53	0.00e+00	784.00
IUUC-Pop-100051	Populus trichocarpa	46.56	3.00e-105	375.00
IUUC-Pca-100152	Procavia capensis	90.06	0.00e+00	914.00
IUUC-Ppe-101244	Prunus persica	46.92	7.00e-109	386.00
IUUC-Pva-102529	Pteropus vampyrus	87.02	0.00e+00	869.00
IUUC-Pgr-103550	Puccinia graminis	36.09	4.00e-102	364.00
IUUC-Ptt-103951	Puccinia triticina	34.11	3.00e-82	298.00
IUUC-Pte-104151	Pyrenophora teres	37.37	2.00e-80	292.00
IUUC-Pyt-104571	Pyrenophora triticirepentis	37.80	3.00e-81	295.00
IUUC-Rno-105747	Rattus norvegicus	89.86	0.00e+00	908.00
IUUC-Sce-106418	Saccharomyces cerevisiae	34.21	5.00e-71	261.00
IUUC-Sha-107334	Sarcophilus harrisii	90.26	0.00e+00	912.00
IUUC-Sja-107794	Schizosaccharomyces japonicus	35.98	5.00e-73	268.00
IUUC-Spo-108189	Schizosaccharomyces pombe	37.44	8.00e-84	303.00
IUUC-Ssl-108550	Sclerotinia sclerotiorum	38.63	4.00e-99	354.00
IUUC-Smo-108924	Selaginella moellendorffii	46.23	3.00e-112	398.00
IUUC-Sit-110102	Setaria italica	44.24	4.00e-104	371.00
IUUC-Sly-111668	Solanum lycopersicum	46.19	1.00e-108	386.00
IUUC-Stu-111928	Solanum tuberosum	45.96	2.00e-108	386.00
IUUC-Sar-113266	Sorex araneus	78.48	0.00e+00	753.00
IUUC-Sbi-114134	Sorghum bicolor	43.57	2.00e-103	369.00
IUUC-Sre-115114	Sporisorium reilianum	41.58	2.00e-106	379.00
IUUC-Ssc-115443	Sus scrofa	90.47	0.00e+00	913.00
IUUC-Tru-118587	Takifugu rubripes	76.60	0.00e+00	743.00
IUUC-Tsy-119157	Tarsius syrichta	91.54	0.00e+00	735.00
IUUC-Tni-120427	Tetraodon nigroviridis	77.78	0.00e+00	755.00
IUUC-Tca-121368	Theobroma cacao	46.00	6.00e-110	390.00
IUUC-Tre-122074	Trichoderma reesei	37.71	7.00e-90	324.00
IUUC-Tvi-122349	Trichoderma virens	36.44	1.00e-87	316.00
IUUC-Tae-125651	Triticum aestivum	43.99	4.00e-104	371.00
IUUC-Tur-126532	Triticum urartu	43.34	7.00e-90	323.00
IUUC-Tme-126951	Tuber melanosporum	41.05	1.00e-103	369.00
IUUC-Tbe-128136	Tupaia belangeri	82.15	0.00e+00	808.00
IUUC-Ttr-129169	Tursiops truncatus	90.94	7.00e-155	540.00
IUUC-Uma-129399	Ustilago maydis	43.04	5.00e-103	367.00
IUUC-Vda-129842	Verticillium dahliae	37.98	2.00e-94	339.00
IUUC-Vpa-130440	Vicugna pacos	90.87	0.00e+00	919.00
IUUC-Vvi-131075	Vitis vinifera	47.86	6.00e-110	390.00
IUUC-Xtr-132713	Xenopus tropicalis	48.49	9.00e-103	366.00
IUUC-Xma-133002	Xiphophorus maculatus	81.89	4.00e-175	606.00
IUUC-Yli-134569	Yarrowia lipolytica	36.32	2.00e-78	286.00
IUUC-Zma-135799	Zea mays	42.31	2.00e-102	366.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence