iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Aly-005643

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Coatomer subunit beta'

Genbank Nucleotide ID

GL348714

Gene Name

ARALYDRAFT_895999

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
scaffold_203073.1	scaffold_203073.1	scaffold_203073.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.40e-34	115.4	177	217
UBD/Beta-Prp	6.10e-66	223.3	6	283

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf...sd.tllvsGsdDgtikvWDlrtgvllks 38
           H  +v+c+++    d ++l++GsdD+t kvWD+ t  ++++
   Q: 177  HLKGVNCVDYftgGDkPYLITGSDDHTAKVWDYQTKSCVQT 217
           8889****966*9778*******************999986 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvls 99
           ++++++++v+ +p +++++++ ++gt+ +w+++t+++++s+   e +v++ kf+ ++++ v g++D++i+v++++t + + ++++h d++++
   Q: 6    QRSERVKSVDLHPTEPWILASLYSGTVCIWNYQTQTMVKSFDVTELPVRSAKFIARKQWVVAGADDMFIRVYNYNTMDKIKVFEAHADYIRC 97
           5678899************************************************************************************* PP
   S: 100  lsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvysls..f 188
           ++++ps  +++s s+d  i++wd+++g+   ++++gh++ v+ v+++p++ n ++s+slDrt+++W+l + +   tl   h + v++++   
   Q: 98   VAVHPSLPHVLSSSDDMLIKLWDWDKGWLCTQIFEGHSHYVMQVTFNPKDsNTFASASLDRTIKIWNLGSPDPNFTLDA-HLKGVNCVDyfT 188
           ****************************9999*********************************************98.*********644 PP
   S: 189  dsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvl 280
             ++++l++gs+d t k+wd+qt++cv+tl+ght nv+ v f+p+  ++++gs+Dg++riW  ++  l +tl++  ++v+++ +++ +++v+
   Q: 189  GGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVSFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGHIKGSRRVV 280
           4555******************************************************************************9977777776 PP
   S: 281  vlg 283
           +  
   Q: 281  IGY 283
           544 PP

Organism

Arabidopsis lyrata

Functional Description
(View)

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Protein Sequence
(Fasta)

MRKFAQRSER VKSVDLHPTE PWILASLYSG TVCIWNYQTQ TMVKSFDVTE LPVRSAKFIA 60
RKQWVVAGAD DMFIRVYNYN TMDKIKVFEA HADYIRCVAV HPSLPHVLSS SDDMLIKLWD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATTGTTTTGG ACTTGCAAAG ATGGTGAGTG ACATGATCTC TCAGTTTCTC CATAGATGTA 60
CCTCTGAATC CTCTTTCAAT TTTTTTTCAT TTCTGGGCTA GTCTACGTAA GAGTGTTCCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR006692--Coatomer_WD-assoc_reg
IPR016453--COPB2
IPR020472--G-protein_beta_WD-40_rep
IPR011048--Haem_d1
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04053--Coatomer_WDAD
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0030663--C:COPI-coated vesicle membrane
GO:0000139--C:Golgi membrane
GO:0030117--C:membrane coat
GO:0005198--F:structural molecule activity
GO:0006886--P:intracellular protein transport
GO:0016192--P:vesicle-mediated transport

KEGG

aly:ARALYDRAFT_895999

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ath-007630	Arabidopsis thaliana	96.38	0.00e+00	1725.00
IUUC-Ago-007914	Ashbya gossypii	46.46	0.00e+00	719.00
IUUC-Afl-008535	Aspergillus flavus	50.30	0.00e+00	854.00
IUUC-Ani-009135	Aspergillus nidulans	52.69	0.00e+00	878.00
IUUC-Ate-010355	Aspergillus terreus	53.19	0.00e+00	879.00
IUUC-Bgr-012249	Blumeria graminis	52.46	0.00e+00	891.00
IUUC-Bta-013579	Bos taurus	61.62	0.00e+00	980.00
IUUC-Bol-015466	Brassica oleracea	91.31	0.00e+00	1596.00
IUUC-Bra-016617	Brassica rapa	93.56	0.00e+00	1581.00
IUUC-Cho-024454	Choloepus hoffmanni	58.16	0.00e+00	922.00
IUUC-Cin-025681	Ciona intestinalis	58.02	0.00e+00	1001.00
IUUC-Csv-026012	Ciona savignyi	57.06	0.00e+00	971.00
IUUC-Dse-031268	Dothistroma septosporum	52.46	0.00e+00	884.00
IUUC-Eeu-035086	Erinaceus europaeus	49.57	9.00e-127	447.00
IUUC-Fal-037202	Ficedula albicollis	59.95	0.00e+00	1071.00
IUUC-Kpa-049265	Komagataella pastoris	50.75	0.00e+00	850.00
IUUC-Lma-053218	Leptosphaeria maculans	52.71	0.00e+00	878.00
IUUC-Meu-056174	Macropus eugenii	53.22	5.00e-112	398.00
IUUC-Mla-058937	Melampsora laricipopulina	53.49	0.00e+00	908.00
IUUC-Mvi-060240	Microbotryum violaceum	52.28	0.00e+00	909.00
IUUC-Nfi-068277	Neosartorya fischeri	52.60	0.00e+00	887.00
IUUC-Opr-070334	Ochotona princeps	62.41	0.00e+00	1004.00
IUUC-Oan-073416	Ornithorhynchus anatinus	61.95	0.00e+00	1060.00
IUUC-Ola-087245	Oryzias latipes	60.88	0.00e+00	1103.00
IUUC-Pno-094785	Phaeosphaeria nodorum	59.31	1.00e-105	376.00
IUUC-Pgr-103453	Puccinia graminis	52.73	0.00e+00	916.00
IUUC-Ptt-103868	Puccinia triticina	52.61	0.00e+00	912.00
IUUC-Pte-104274	Pyrenophora teres	53.56	0.00e+00	903.00
IUUC-Pyt-104794	Pyrenophora triticirepentis	52.86	0.00e+00	863.00
IUUC-Sce-106269	Saccharomyces cerevisiae	47.22	0.00e+00	750.00
IUUC-Sja-107838	Schizosaccharomyces japonicus	47.19	0.00e+00	782.00
IUUC-Spo-108299	Schizosaccharomyces pombe	47.84	0.00e+00	805.00
IUUC-Sar-113472	Sorex araneus	56.54	0.00e+00	758.00
IUUC-Tre-122072	Trichoderma reesei	53.09	0.00e+00	888.00
IUUC-Tvi-122546	Trichoderma virens	52.96	0.00e+00	874.00
IUUC-Vpa-130037	Vicugna pacos	50.54	5.00e-132	464.00
IUUC-Yli-134455	Yarrowia lipolytica	50.58	0.00e+00	813.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence