iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Ogl-077450

UUCD1 version

UUC-OrG-02004

Ensembl Protein ID

ORGLA06G0028400.1

UniProt Accession

I1PZH1; I1PZH1_ORYGL

Protein Name

Coatomer subunit beta'

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ORGLA06G0028400	ORGLA06G0028400.1	ORGLA06G0028400.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.90e-34	115.3	183	224
UBD/Beta-Prp	1.30e-67	228.7	10	296

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf...sd.tllvsGsdDgtikvWDlrtgvllks 38
           gH+ +v+c+++    d ++l++GsdD t kvWD+ t  ++++
   Q: 183  GHQKGVNCVDYftgGDrPYLITGSDDSTAKVWDYQTKSCVQT 224
           8********966*9778*******************999986 PP

UBD/Beta-Prp

   S: 5    lkghhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkgheds 96
            ++++++++++v+ +p +++++++ ++g++ +wd++++++++s++  e +v++ kf++++++ v g++D++i+v++++t + v ++++h+d+
   Q: 10   KFAQRSERVKSVDLHPTEPWILSSLYSGSVCIWDYQSQTMVKSFEVSELPVRSAKFISRKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDY 101
           567788999*********************************************************************************** PP
   S: 97   vlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvysls 187
           +++++++p+  +++s s+d  i++wd+++g+   ++++gh++ v+ v+++p++ n ++s+slDrt ++W+l + +   tl g h++ v++++
   Q: 102  IRCVAVHPTLPYVLSSSDDMLIKLWDWDKGWMCTQIFEGHSHYVMQVTFNPKDaNTFASASLDRTTKIWSLGSPDPNFTLDG-HQKGVNCVD 192
           *******************************9999**********************************************9.********* PP
   S: 188  ..fdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgd 277
                ++++l++gs+d+t k+wd+qt++cv+tl+ght n++ v f+p+  ++++gs+Dg++riW +++  l +tl++  ++v++v +++   
   Q: 193  yfTGGDRPYLITGSDDSTAKVWDYQTKSCVQTLEGHTHNISAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAVGYMKG-S 283
           7445566******************************************************************************99444.4 PP
   S: 278  nvlvlgsedskvn 290
           + +v g ++++++
   Q: 284  RRMVIGYDEGTIM 296
           5555555555655 PP

Organism

Oryza glaberrima

Functional Description
(View)

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Protein Sequence
(Fasta)

MPLRLEIKRK FAQRSERVKS VDLHPTEPWI LSSLYSGSVC IWDYQSQTMV KSFEVSELPV 60
RSAKFISRKQ WVVAGADDMF IRVYNYNTMD KVKVFEAHTD YIRCVAVHPT LPYVLSSSDD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGTACGTA CGCGGATCTG AGCTCTGGCC AGCGCGCTCT CGCTGTTCCG ATCAATCCGC 60
TCGCCCGTTT TTTTTTTGTG TGTGTTGGGA AGTAATTGGG TGTGGTTTGG GGAGAGATCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0677--Repeat
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR006692--Coatomer_WD-assoc_reg
IPR016453--COPB2
IPR020472--G-protein_beta_WD-40_rep
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04053--Coatomer_WDAD
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0030663--C:COPI-coated vesicle membrane
GO:0000139--C:Golgi membrane
GO:0030117--C:membrane coat
GO:0005198--F:structural molecule activity
GO:0006886--P:intracellular protein transport
GO:0016192--P:vesicle-mediated transport

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000654	Aegilops tauschii	82.35	0.00e+00	1536.00
IUUC-Aml-002154	Ailuropoda melanoleuca	61.33	0.00e+00	1103.00
IUUC-Atr-003090	Amborella trichopoda	78.54	0.00e+00	1483.00
IUUC-Apl-003976	Anas platyrhynchos	61.45	0.00e+00	1108.00
IUUC-Aca-004301	Anolis carolinensis	61.50	0.00e+00	1113.00
IUUC-Aly-006508	Arabidopsis lyrata	81.12	0.00e+00	1539.00
IUUC-Ath-007635	Arabidopsis thaliana	80.22	0.00e+00	1532.00
IUUC-Ago-007914	Ashbya gossypii	46.61	0.00e+00	714.00
IUUC-Acl-008237	Aspergillus clavatus	51.97	0.00e+00	902.00
IUUC-Afl-008535	Aspergillus flavus	49.58	0.00e+00	855.00
IUUC-Afu-008845	Aspergillus fumigatus	52.33	0.00e+00	889.00
IUUC-Ani-009135	Aspergillus nidulans	52.68	0.00e+00	886.00
IUUC-Ang-009654	Aspergillus niger	54.38	0.00e+00	807.00
IUUC-Aor-009939	Aspergillus oryzae	50.29	0.00e+00	914.00
IUUC-Ate-010355	Aspergillus terreus	52.32	0.00e+00	879.00
IUUC-Ame-010922	Astyanax mexicanus	56.00	0.00e+00	954.00
IUUC-Bgr-012249	Blumeria graminis	52.40	0.00e+00	884.00
IUUC-Bta-013579	Bos taurus	60.98	0.00e+00	960.00
IUUC-Bci-013866	Botrytis cinerea	53.26	0.00e+00	892.00
IUUC-Bdi-014102	Brachypodium distachyon	94.21	0.00e+00	1654.00
IUUC-Bol-016271	Brassica oleracea	80.22	0.00e+00	1523.00
IUUC-Bra-017758	Brassica rapa	79.72	0.00e+00	1520.00
IUUC-Cel-018387	Caenorhabditis elegans	54.33	0.00e+00	957.00
IUUC-Cja-019145	Callithrix jacchus	61.26	0.00e+00	1105.00
IUUC-Cfa-020564	Canis familiaris	61.38	0.00e+00	1107.00
IUUC-Cpo-022201	Cavia porcellus	61.33	0.00e+00	1105.00
IUUC-Cre-022938	Chlamydomonas reinhardtii	66.26	0.00e+00	1108.00
IUUC-Csa-023383	Chlorocebus sabaeus	64.74	0.00e+00	832.00
IUUC-Cho-024454	Choloepus hoffmanni	58.21	0.00e+00	920.00
IUUC-Cin-025681	Ciona intestinalis	59.20	0.00e+00	990.00
IUUC-Csv-026012	Ciona savignyi	58.45	0.00e+00	972.00
IUUC-Cgl-026649	Colletotrichum gloeosporioides	48.34	0.00e+00	797.00
IUUC-Cne-026986	Cryptococcus neoformans	48.80	0.00e+00	857.00
IUUC-Cme-027219	Cyanidioschyzon merolae	51.50	0.00e+00	879.00
IUUC-Dre-027846	Danio rerio	61.43	0.00e+00	1106.00
IUUC-Dor-030462	Dipodomys ordii	58.47	0.00e+00	847.00
IUUC-Dse-031268	Dothistroma septosporum	51.40	0.00e+00	878.00
IUUC-Dme-031791	Drosophila melanogaster	57.25	0.00e+00	1017.00
IUUC-Ete-033166	Echinops telfairi	57.50	0.00e+00	701.00
IUUC-Eca-034180	Equus caballus	59.81	0.00e+00	1061.00
IUUC-Eeu-035086	Erinaceus europaeus	50.43	4.00e-124	438.00
IUUC-Fca-036265	Felis catus	61.38	0.00e+00	1105.00
IUUC-Fal-037202	Ficedula albicollis	60.98	0.00e+00	1061.00
IUUC-Fox-037711	Fusarium oxysporum	52.58	0.00e+00	846.00
IUUC-Fso-038268	Fusarium solani	51.58	0.00e+00	850.00
IUUC-Gmo-039046	Gadus morhua	62.38	0.00e+00	1093.00
IUUC-Ggr-039863	Gaeumannomyces graminis	51.41	0.00e+00	867.00
IUUC-Gga-041112	Gallus gallus	59.36	0.00e+00	1116.00
IUUC-Gac-041733	Gasterosteus aculeatus	61.48	0.00e+00	1062.00
IUUC-Gma-044126	Glycine max	84.42	0.00e+00	1608.00
IUUC-Ggo-044984	Gorilla gorilla	61.26	0.00e+00	1105.00
IUUC-Hsa-046698	Homo sapiens	61.26	0.00e+00	1105.00
IUUC-Hvu-047669	Hordeum vulgare	92.37	0.00e+00	706.00
IUUC-Itr-048212	Ictidomys tridecemlineatus	61.33	0.00e+00	1102.00
IUUC-Kpa-049265	Komagataella pastoris	51.28	0.00e+00	843.00
IUUC-Lch-050473	Latimeria chalumnae	58.27	0.00e+00	1113.00
IUUC-Lpe-051579	Leersia perrieri	83.50	0.00e+00	1551.00
IUUC-Loc-052675	Lepisosteus oculatus	61.55	0.00e+00	1108.00
IUUC-Lma-053218	Leptosphaeria maculans	52.14	0.00e+00	862.00
IUUC-Laf-053757	Loxodonta africana	59.63	0.00e+00	1101.00
IUUC-Mcc-054859	Macaca mulatta	61.26	0.00e+00	1105.00
IUUC-Meu-056174	Macropus eugenii	52.13	6.00e-110	390.00
IUUC-Mor-057264	Magnaporthe oryzae	51.47	0.00e+00	853.00
IUUC-Mpo-057538	Magnaporthe poae	51.16	0.00e+00	872.00
IUUC-Mtr-058618	Medicago truncatula	83.26	0.00e+00	1559.00
IUUC-Mla-058937	Melampsora laricipopulina	52.16	0.00e+00	879.00
IUUC-Mga-059875	Meleagris gallopavo	59.46	0.00e+00	1114.00
IUUC-Mvi-060240	Microbotryum violaceum	47.60	0.00e+00	885.00
IUUC-Mmr-061261	Microcebus murinus	61.38	0.00e+00	1106.00
IUUC-Mdo-062076	Monodelphis domestica	61.62	0.00e+00	1113.00
IUUC-Mmu-063324	Mus musculus	61.38	0.00e+00	1106.00
IUUC-Mac-064636	Musa acuminata	84.43	0.00e+00	1583.00
IUUC-Mpu-065961	Mustela putorius furo	61.38	0.00e+00	1105.00
IUUC-Mlu-067059	Myotis lucifugus	60.53	0.00e+00	1092.00
IUUC-Nfi-068277	Neosartorya fischeri	52.04	0.00e+00	876.00
IUUC-Ncr-068659	Neurospora crassa	52.45	0.00e+00	889.00
IUUC-Nle-069034	Nomascus leucogenys	59.84	0.00e+00	1105.00
IUUC-Opr-070334	Ochotona princeps	61.74	0.00e+00	995.00
IUUC-Ont-071563	Oreochromis niloticus	62.10	0.00e+00	1098.00
IUUC-Oan-073416	Ornithorhynchus anatinus	60.73	0.00e+00	1048.00
IUUC-Ocu-074522	Oryctolagus cuniculus	61.38	0.00e+00	1102.00
IUUC-Oba-075760	Oryza barthii	98.57	0.00e+00	1760.00
IUUC-Obr-076163	Oryza brachyantha	84.08	0.00e+00	1567.00
IUUC-Ogu-078994	Oryza glumaepatula	98.57	0.00e+00	1757.00
IUUC-Oin-079211	Oryza indica	97.56	0.00e+00	1714.00
IUUC-Olo-080731	Oryza longistaminata	97.26	0.00e+00	1731.00
IUUC-Ome-081762	Oryza meridionalis	91.54	0.00e+00	1612.00
IUUC-Oni-082324	Oryza nivara	98.57	0.00e+00	1759.00
IUUC-Opu-083433	Oryza punctata	99.06	0.00e+00	1659.00
IUUC-Oru-084829	Oryza rufipogon	98.68	0.00e+00	1761.00
IUUC-Osa-086026	Oryza sativa	99.78	0.00e+00	1772.00
IUUC-Ola-087245	Oryzias latipes	61.93	0.00e+00	1099.00
IUUC-Olu-087655	Ostreococcus lucimarinus	64.98	0.00e+00	1130.00
IUUC-Oga-088163	Otolemur garnettii	57.51	0.00e+00	1053.00
IUUC-Oar-089842	Ovis aries	61.26	0.00e+00	1105.00
IUUC-Ptr-090501	Pan troglodytes	61.26	0.00e+00	1105.00
IUUC-Pan-092011	Papio anubis	61.26	0.00e+00	1105.00
IUUC-Psi-093308	Pelodiscus sinensis	61.62	0.00e+00	1110.00
IUUC-Pma-094695	Petromyzon marinus	57.99	0.00e+00	973.00
IUUC-Pno-094785	Phaeosphaeria nodorum	58.76	2.00e-103	369.00
IUUC-Ppa-095911	Physcomitrella patens	76.16	0.00e+00	1424.00
IUUC-Pfo-096587	Poecilia formosa	61.98	0.00e+00	1102.00
IUUC-Pab-097926	Pongo abelii	59.17	0.00e+00	1036.00
IUUC-Pop-099634	Populus trichocarpa	83.04	0.00e+00	1553.00
IUUC-Pca-100965	Procavia capensis	60.36	0.00e+00	1067.00
IUUC-Ppe-101470	Prunus persica	83.53	0.00e+00	1607.00
IUUC-Pva-102451	Pteropus vampyrus	57.42	0.00e+00	842.00
IUUC-Pgr-103453	Puccinia graminis	51.83	0.00e+00	889.00
IUUC-Ptt-103868	Puccinia triticina	52.02	0.00e+00	890.00
IUUC-Pte-104274	Pyrenophora teres	52.93	0.00e+00	895.00
IUUC-Pyt-104794	Pyrenophora triticirepentis	52.23	0.00e+00	844.00
IUUC-Rno-105979	Rattus norvegicus	52.77	0.00e+00	804.00
IUUC-Sce-106269	Saccharomyces cerevisiae	46.98	0.00e+00	749.00
IUUC-Sha-106905	Sarcophilus harrisii	59.98	0.00e+00	1110.00
IUUC-Sja-107838	Schizosaccharomyces japonicus	45.89	0.00e+00	763.00
IUUC-Spo-108299	Schizosaccharomyces pombe	45.57	0.00e+00	788.00
IUUC-Smo-108695	Selaginella moellendorffii	80.88	0.00e+00	1398.00
IUUC-Sit-110239	Setaria italica	94.29	0.00e+00	1767.00
IUUC-Sly-111525	Solanum lycopersicum	81.69	0.00e+00	1541.00
IUUC-Stu-112906	Solanum tuberosum	80.95	0.00e+00	1415.00
IUUC-Sar-113472	Sorex araneus	56.29	0.00e+00	759.00
IUUC-Sbi-113801	Sorghum bicolor	82.24	0.00e+00	1545.00
IUUC-Sre-115040	Sporisorium reilianum	51.20	0.00e+00	875.00
IUUC-Ssc-115593	Sus scrofa	61.26	0.00e+00	1105.00
IUUC-Tgu-117239	Taeniopygia guttata	61.70	0.00e+00	1112.00
IUUC-Tru-118025	Takifugu rubripes	61.65	0.00e+00	1093.00
IUUC-Tsy-118824	Tarsius syrichta	57.62	0.00e+00	786.00
IUUC-Tni-120142	Tetraodon nigroviridis	61.68	0.00e+00	1089.00
IUUC-Tca-121613	Theobroma cacao	85.70	0.00e+00	1632.00
IUUC-Tre-122072	Trichoderma reesei	51.97	0.00e+00	877.00
IUUC-Tvi-122546	Trichoderma virens	51.60	0.00e+00	863.00
IUUC-Tae-125395	Triticum aestivum	92.43	0.00e+00	1728.00
IUUC-Tur-126283	Triticum urartu	83.33	0.00e+00	1537.00
IUUC-Tme-127041	Tuber melanosporum	53.19	0.00e+00	904.00
IUUC-Tbe-127770	Tupaia belangeri	59.40	0.00e+00	880.00
IUUC-Ttr-129294	Tursiops truncatus	61.14	0.00e+00	1102.00
IUUC-Uma-129351	Ustilago maydis	50.36	0.00e+00	872.00
IUUC-Vda-129716	Verticillium dahliae	52.46	0.00e+00	896.00
IUUC-Vpa-130037	Vicugna pacos	50.97	4.00e-129	454.00
IUUC-Vvi-131689	Vitis vinifera	87.69	0.00e+00	1566.00
IUUC-Xtr-132633	Xenopus tropicalis	61.26	0.00e+00	1102.00
IUUC-Xma-133347	Xiphophorus maculatus	62.22	0.00e+00	1103.00
IUUC-Yli-134455	Yarrowia lipolytica	50.00	0.00e+00	805.00
IUUC-Zma-135789	Zea mays	91.77	0.00e+00	1731.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence