iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Opu-083400

Ensembl Protein ID

OPUNC02G07400.2

UniProt Accession

A0A0E0JX73; A0A0E0JX73_ORYPU

Protein Name

Coatomer subunit beta'

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
OPUNC02G07400	OPUNC02G07400.1	OPUNC02G07400.1
OPUNC02G07400	OPUNC02G07400.2	OPUNC02G07400.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.00e-33	113.8	206	247
UBD/Beta-Prp	1.70e-63	215.5	12	311

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf...sd.tllvsGsdDgtikvWDlrtgvllks 38
           gH+ +v+c+++    d ++l++GsdD t +vWD+ t  ++++
   Q: 206  GHSKGVNCVDYftgGDrPYLITGSDDQTAMVWDYQTKSCVQT 247
           8********966*9778*******************999986 PP

UBD/Beta-Prp

   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheae.........................vtavkfspdgkilvtgseDrtik 77
           +++++++v+ +p +++++++ ++g++ +w+++t+ +++s++  e +                         v++ kf+ ++++ v g++D++i+
   Q: 12   RSERVKSVDLHPTEPWILSSLYSGSVCIWNYQTQAMVKSFEVTELPgmlfhlityfcsmiyrhaniiipisVRSAKFIARKQWVVAGADDMFIR 105
           5678999*********************************9988888*********************************************** PP
   S: 78   vwdlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgk 170
           v++++t + v ++++h+d++++++++p++ +++s s+d  i++wd+++g+   ++++gh++ v+ v+++p++ n ++s+slDrtv++W+l + +
   Q: 106  VYNYNTMDKVKVFEAHTDYIRCVAVHPTQPFVLSSSDDMLIKLWDWDKGWMCTQIFEGHSHYVMQVTFNPKDtNTFASASLDRTVKVWSLGSPD 199
           **************************************************9999**************************************** PP
   S: 171  llrtltgghtdsvysls..fdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlql 262
              tl g h + v++++     ++++l++gs+d+t  +wd+qt++cv+tl+gh  nv+ v f+p+  ++++gs+Dg++r+W +++  l +tl++
   Q: 200  PNFTLDG-HSKGVNCVDyfTGGDRPYLITGSDDQTAMVWDYQTKSCVQTLEGHAHNVSAVCFHPELPIILTGSEDGTVRLWHSTTYRLENTLNY 292
           ******9.*********7445566********************************************************************** PP
   S: 263  hnssvisvavlsfgdnvlv 281
             ++v++  +++ +++v++
   Q: 293  GLERVWALGYMKSSRRVVI 311
           ******9999777776664 PP

Organism

Oryza punctata

Functional Description
(View)

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Protein Sequence
(Fasta)

MKANGHRKLA QRSERVKSVD LHPTEPWILS SLYSGSVCIW NYQTQAMVKS FEVTELPGML 60
FHLITYFCSM IYRHANIIIP ISVRSAKFIA RKQWVVAGAD DMFIRVYNYN TMDKVKVFEA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAAGGCTA ATGGACATGT AAGTCACCTG ATGCATAAAC TTAGACAATA ATATTTCATC 60
ATTAAAAAAG TCTCACATTT TTATCCGGAT AGATGCAATG ATGATATTTA GGCCACGTTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR006692--Coatomer_WD-assoc_reg
IPR016453--COPB2
IPR020472--G-protein_beta_WD-40_rep
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04053--Coatomer_WDAD
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0030663--C:COPI-coated vesicle membrane
GO:0000139--C:Golgi membrane
GO:0030117--C:membrane coat
GO:0005198--F:structural molecule activity
GO:0006886--P:intracellular protein transport
GO:0016192--P:vesicle-mediated transport

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002154	Ailuropoda melanoleuca	59.39	0.00e+00	1066.00
IUUC-Apl-003976	Anas platyrhynchos	58.77	0.00e+00	1072.00
IUUC-Aca-004301	Anolis carolinensis	58.65	0.00e+00	1074.00
IUUC-Aly-006508	Arabidopsis lyrata	78.09	0.00e+00	1462.00
IUUC-Ath-007635	Arabidopsis thaliana	77.22	0.00e+00	1456.00
IUUC-Ago-007914	Ashbya gossypii	45.49	0.00e+00	706.00
IUUC-Acl-008237	Aspergillus clavatus	50.29	0.00e+00	868.00
IUUC-Afu-008845	Aspergillus fumigatus	49.37	0.00e+00	857.00
IUUC-Ani-009135	Aspergillus nidulans	50.87	0.00e+00	842.00
IUUC-Ang-009654	Aspergillus niger	54.37	0.00e+00	784.00
IUUC-Aor-009939	Aspergillus oryzae	49.37	0.00e+00	877.00
IUUC-Ate-010355	Aspergillus terreus	49.82	0.00e+00	843.00
IUUC-Ame-010922	Astyanax mexicanus	52.07	0.00e+00	920.00
IUUC-Bgr-012249	Blumeria graminis	50.72	0.00e+00	847.00
IUUC-Bta-013579	Bos taurus	59.46	0.00e+00	942.00
IUUC-Bci-013866	Botrytis cinerea	50.95	0.00e+00	842.00
IUUC-Bdi-015046	Brachypodium distachyon	87.29	0.00e+00	1636.00
IUUC-Bol-016271	Brassica oleracea	77.40	0.00e+00	1468.00
IUUC-Bra-017758	Brassica rapa	76.24	0.00e+00	1446.00
IUUC-Cel-018387	Caenorhabditis elegans	52.12	0.00e+00	924.00
IUUC-Cja-019145	Callithrix jacchus	59.27	0.00e+00	1066.00
IUUC-Cfa-020564	Canis familiaris	59.39	0.00e+00	1067.00
IUUC-Cpo-022201	Cavia porcellus	58.12	0.00e+00	1069.00
IUUC-Cre-022938	Chlamydomonas reinhardtii	63.53	0.00e+00	1063.00
IUUC-Csa-023383	Chlorocebus sabaeus	62.35	0.00e+00	800.00
IUUC-Cho-024454	Choloepus hoffmanni	56.69	0.00e+00	891.00
IUUC-Cin-025681	Ciona intestinalis	56.29	0.00e+00	954.00
IUUC-Csv-026012	Ciona savignyi	56.80	0.00e+00	936.00
IUUC-Cgl-026649	Colletotrichum gloeosporioides	47.14	0.00e+00	759.00
IUUC-Cne-026986	Cryptococcus neoformans	48.05	0.00e+00	822.00
IUUC-Cme-027219	Cyanidioschyzon merolae	50.92	0.00e+00	848.00
IUUC-Dre-027846	Danio rerio	58.67	0.00e+00	1064.00
IUUC-Dor-030462	Dipodomys ordii	56.23	0.00e+00	813.00
IUUC-Dse-031268	Dothistroma septosporum	49.94	0.00e+00	838.00
IUUC-Dme-031791	Drosophila melanogaster	55.44	0.00e+00	975.00
IUUC-Ete-033166	Echinops telfairi	55.29	0.00e+00	668.00
IUUC-Eca-034180	Equus caballus	58.26	0.00e+00	1032.00
IUUC-Fca-036265	Felis catus	58.12	0.00e+00	1070.00
IUUC-Fal-037202	Ficedula albicollis	58.33	0.00e+00	1037.00
IUUC-Fox-037711	Fusarium oxysporum	51.01	0.00e+00	808.00
IUUC-Fso-038268	Fusarium solani	50.18	0.00e+00	813.00
IUUC-Gmo-039046	Gadus morhua	58.14	0.00e+00	1058.00
IUUC-Ggr-039863	Gaeumannomyces graminis	51.07	0.00e+00	830.00
IUUC-Gga-041112	Gallus gallus	59.35	0.00e+00	1077.00
IUUC-Gac-041733	Gasterosteus aculeatus	58.77	0.00e+00	1026.00
IUUC-Gma-044086	Glycine max	80.62	0.00e+00	1525.00
IUUC-Ggo-044984	Gorilla gorilla	57.89	0.00e+00	1066.00
IUUC-Hsa-046698	Homo sapiens	57.78	0.00e+00	1066.00
IUUC-Hvu-047669	Hordeum vulgare	88.71	0.00e+00	694.00
IUUC-Itr-048212	Ictidomys tridecemlineatus	58.08	0.00e+00	1068.00
IUUC-Kpa-049265	Komagataella pastoris	48.43	0.00e+00	806.00
IUUC-Lch-050473	Latimeria chalumnae	58.03	0.00e+00	1067.00
IUUC-Lpe-051579	Leersia perrieri	92.28	0.00e+00	1679.00
IUUC-Loc-052675	Lepisosteus oculatus	59.36	0.00e+00	1065.00
IUUC-Lma-053218	Leptosphaeria maculans	50.12	0.00e+00	834.00
IUUC-Laf-053757	Loxodonta africana	58.11	0.00e+00	1064.00
IUUC-Mcc-054859	Macaca mulatta	59.27	0.00e+00	1066.00
IUUC-Mor-057264	Magnaporthe oryzae	51.13	0.00e+00	814.00
IUUC-Mpo-057538	Magnaporthe poae	50.54	0.00e+00	832.00
IUUC-Mtr-058618	Medicago truncatula	80.88	0.00e+00	1485.00
IUUC-Mla-058937	Melampsora laricipopulina	51.88	0.00e+00	872.00
IUUC-Mga-059875	Meleagris gallopavo	59.10	0.00e+00	1073.00
IUUC-Mvi-060240	Microbotryum violaceum	47.21	0.00e+00	854.00
IUUC-Mmr-061261	Microcebus murinus	58.97	0.00e+00	1068.00
IUUC-Mdo-062076	Monodelphis domestica	59.62	0.00e+00	1073.00
IUUC-Mmu-063324	Mus musculus	58.01	0.00e+00	1069.00
IUUC-Mac-064636	Musa acuminata	81.29	0.00e+00	1535.00
IUUC-Mpu-065961	Mustela putorius furo	58.26	0.00e+00	1066.00
IUUC-Mlu-067059	Myotis lucifugus	58.16	0.00e+00	1051.00
IUUC-Nfi-068277	Neosartorya fischeri	49.60	0.00e+00	855.00
IUUC-Ncr-068659	Neurospora crassa	50.12	0.00e+00	845.00
IUUC-Nle-069034	Nomascus leucogenys	57.89	0.00e+00	1067.00
IUUC-Opr-070334	Ochotona princeps	60.40	0.00e+00	966.00
IUUC-Ont-071563	Oreochromis niloticus	57.42	0.00e+00	1062.00
IUUC-Oan-073416	Ornithorhynchus anatinus	58.97	0.00e+00	1023.00
IUUC-Ocu-074522	Oryctolagus cuniculus	59.39	0.00e+00	1064.00
IUUC-Oba-075751	Oryza barthii	94.63	0.00e+00	1654.00
IUUC-Obr-076163	Oryza brachyantha	92.08	0.00e+00	1695.00
IUUC-Oin-079856	Oryza indica	94.97	0.00e+00	1736.00
IUUC-Ome-081554	Oryza meridionalis	89.78	0.00e+00	1626.00
IUUC-Oru-085196	Oryza rufipogon	92.47	0.00e+00	1677.00
IUUC-Ola-087245	Oryzias latipes	58.32	0.00e+00	1060.00
IUUC-Olu-087655	Ostreococcus lucimarinus	63.70	0.00e+00	1096.00
IUUC-Oga-088163	Otolemur garnettii	55.47	0.00e+00	1012.00
IUUC-Oar-089842	Ovis aries	59.27	0.00e+00	1068.00
IUUC-Ptr-090501	Pan troglodytes	57.61	0.00e+00	1067.00
IUUC-Pan-092011	Papio anubis	59.27	0.00e+00	1067.00
IUUC-Psi-093308	Pelodiscus sinensis	58.89	0.00e+00	1072.00
IUUC-Pma-094695	Petromyzon marinus	53.26	0.00e+00	934.00
IUUC-Pfo-096587	Poecilia formosa	58.73	0.00e+00	1060.00
IUUC-Pab-097926	Pongo abelii	57.59	0.00e+00	1000.00
IUUC-Pop-099634	Populus trichocarpa	79.18	0.00e+00	1484.00
IUUC-Pca-100965	Procavia capensis	58.33	0.00e+00	1032.00
IUUC-Ppe-101470	Prunus persica	80.41	0.00e+00	1521.00
IUUC-Pva-102451	Pteropus vampyrus	55.07	0.00e+00	804.00
IUUC-Pgr-103453	Puccinia graminis	51.73	0.00e+00	879.00
IUUC-Ptt-103868	Puccinia triticina	51.85	0.00e+00	878.00
IUUC-Pte-104274	Pyrenophora teres	50.30	0.00e+00	848.00
IUUC-Sce-106269	Saccharomyces cerevisiae	46.15	0.00e+00	723.00
IUUC-Sha-106905	Sarcophilus harrisii	59.62	0.00e+00	1074.00
IUUC-Sja-107838	Schizosaccharomyces japonicus	44.24	0.00e+00	740.00
IUUC-Spo-108299	Schizosaccharomyces pombe	45.40	0.00e+00	764.00
IUUC-Sit-110692	Setaria italica	88.10	0.00e+00	1607.00
IUUC-Sly-111775	Solanum lycopersicum	78.96	0.00e+00	1492.00
IUUC-Sbi-113801	Sorghum bicolor	86.77	0.00e+00	1615.00
IUUC-Sre-115040	Sporisorium reilianum	50.12	0.00e+00	847.00
IUUC-Ssc-115593	Sus scrofa	57.89	0.00e+00	1066.00
IUUC-Tgu-117239	Taeniopygia guttata	59.00	0.00e+00	1074.00
IUUC-Tru-118025	Takifugu rubripes	57.01	0.00e+00	1058.00
IUUC-Tsy-118824	Tarsius syrichta	54.98	0.00e+00	754.00
IUUC-Tni-120142	Tetraodon nigroviridis	59.00	0.00e+00	1053.00
IUUC-Tca-121613	Theobroma cacao	80.89	0.00e+00	1530.00
IUUC-Tre-122072	Trichoderma reesei	50.12	0.00e+00	832.00
IUUC-Tvi-122546	Trichoderma virens	49.12	0.00e+00	819.00
IUUC-Tae-125385	Triticum aestivum	87.90	0.00e+00	1628.00
IUUC-Tme-127041	Tuber melanosporum	50.12	0.00e+00	854.00
IUUC-Tbe-127770	Tupaia belangeri	57.33	0.00e+00	847.00
IUUC-Ttr-129294	Tursiops truncatus	59.15	0.00e+00	1064.00
IUUC-Uma-129351	Ustilago maydis	48.93	0.00e+00	842.00
IUUC-Vda-129716	Verticillium dahliae	51.07	0.00e+00	862.00
IUUC-Vvi-131689	Vitis vinifera	82.67	0.00e+00	1486.00
IUUC-Xtr-132633	Xenopus tropicalis	57.59	0.00e+00	1071.00
IUUC-Xma-133347	Xiphophorus maculatus	58.97	0.00e+00	1061.00
IUUC-Yli-134455	Yarrowia lipolytica	48.46	0.00e+00	769.00
IUUC-Zma-135706	Zea mays	87.22	0.00e+00	1643.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence