iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sly-111316

Ensembl Protein ID

Solyc07g008860.2.1

UniProt Accession

K4CC05; K4CC05_SOLLC

Protein Name

Uncharacterized protein

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Solyc07g008860.2	Solyc07g008860.2.1	Solyc07g008860.2.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	6.40e-45	149.9	108	144
UBD/Beta-Prp	4.00e-71	240.4	57	235

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvl 35
           gHtdsv++laf sd  ll+sGs Dg+i+vWD+++g l
   Q: 108  GHTDSVSSLAFsSDgQLLASGSLDGNIRVWDITSGGL 144
           8***********999******************9976 PP

UBD/Beta-Prp

   S: 84   gkcvhtlkghedsvlslsfspsg.dklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllr 173
            + +ht++gh+ ++++++ sp++ + +v+G+ d+   +w++ +g      l+gh+++v+++++++dg+ll+sGslD+ +r+Wd+ +g l  
   Q: 57   DDSLHTFTGHTGELYTVTCSPTDaSLVVTGGGDDRGFMWKIGQGDFAF-ELQGHTDSVSSLAFSSDGQLLASGSLDGNIRVWDITSGGLKG 146
           6789*****************77799******************9998.9***************************************** PP
   S: 174  tltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlh 263
           tl+g  ++ ++++ +++ g  +++gs+d++v +w+  t+  ++t+ gh   v++ +f+p+++++ +gs+D ++riWd +s + ++++ +h
   Q: 147  TLEG-PEKGIEWVRWHPRGHVVLAGSEDSSVWMWNADTSAFMNTFLGHAGSVTCGDFTPDGKLICTGSDDATLRIWDPKSAQSIHVVRGH 235
           ***9.******************************************************************************9998876 PP

Organism

Solanum lycopersicum

Protein Sequence
(Fasta)

MNAPSPHHED DEHEDEVFLE DSDIIEEINV DEEELVDADD DDEEDEQGGG EFIDEADDSL 60
HTFTGHTGEL YTVTCSPTDA SLVVTGGGDD RGFMWKIGQG DFAFELQGHT DSVSSLAFSS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAACGCTC CATCACCCCA CCACGAAGAC GATGAACACG AAGATGAGGT CTTCTTAGAG 60
GATAGTGATA TCATTGAAGA AATTAATGTT GATGAAGAAG GTAGAAAAAA AATCCAATCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR011047--Quinoprotein_ADH-like_supfam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0030687--C:preribosome, large subunit precursor
GO:0051082--F:unfolded protein binding
GO:0042273--P:ribosomal large subunit biogenesis

KEGG

sly:101261533

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000794	Aegilops tauschii	60.91	3.00e-121	428.00
IUUC-Aml-001781	Ailuropoda melanoleuca	35.31	2.00e-60	225.00
IUUC-Atr-003169	Amborella trichopoda	66.18	1.00e-142	498.00
IUUC-Aca-004594	Anolis carolinensis	36.75	3.00e-59	221.00
IUUC-Aly-006277	Arabidopsis lyrata	62.79	5.00e-129	453.00
IUUC-Ath-007701	Arabidopsis thaliana	66.67	2.00e-140	491.00
IUUC-Ame-011651	Astyanax mexicanus	35.39	1.00e-55	209.00
IUUC-Bta-012833	Bos taurus	36.16	3.00e-61	228.00
IUUC-Bdi-014289	Brachypodium distachyon	62.39	3.00e-127	447.00
IUUC-Bol-015389	Brassica oleracea	63.32	9.00e-141	492.00
IUUC-Bra-017115	Brassica rapa	64.22	2.00e-124	438.00
IUUC-Cel-018305	Caenorhabditis elegans	24.67	2.00e-28	119.00
IUUC-Cja-019433	Callithrix jacchus	35.59	4.00e-60	224.00
IUUC-Cfa-020093	Canis familiaris	35.59	3.00e-60	224.00
IUUC-Cpo-021742	Cavia porcellus	35.59	3.00e-60	224.00
IUUC-Cre-022781	Chlamydomonas reinhardtii	42.24	5.00e-73	267.00
IUUC-Csa-023498	Chlorocebus sabaeus	35.59	2.00e-60	225.00
IUUC-Cho-024628	Choloepus hoffmanni	35.92	3.00e-48	184.00
IUUC-Cin-025244	Ciona intestinalis	36.02	4.00e-59	221.00
IUUC-Csv-026218	Ciona savignyi	33.71	3.00e-54	204.00
IUUC-Cne-026911	Cryptococcus neoformans	27.72	1.00e-34	140.00
IUUC-Dre-028528	Danio rerio	36.78	3.00e-59	221.00
IUUC-Dno-029297	Dasypus novemcinctus	35.59	3.00e-60	224.00
IUUC-Ete-033100	Echinops telfairi	39.62	4.00e-41	160.00
IUUC-Eca-034277	Equus caballus	35.59	4.00e-60	224.00
IUUC-Fca-036115	Felis catus	35.59	3.00e-60	224.00
IUUC-Fal-036864	Ficedula albicollis	36.72	1.00e-64	239.00
IUUC-Gmo-039090	Gadus morhua	33.82	1.00e-42	166.00
IUUC-Gga-040545	Gallus gallus	37.01	8.00e-65	240.00
IUUC-Gac-042027	Gasterosteus aculeatus	38.78	3.00e-65	241.00
IUUC-Gma-044168	Glycine max	68.23	6.00e-146	509.00
IUUC-Ggo-045036	Gorilla gorilla	35.59	4.00e-60	224.00
IUUC-Hsa-046749	Homo sapiens	35.59	4.00e-60	224.00
IUUC-Hvu-047217	Hordeum vulgare	58.90	2.00e-125	441.00
IUUC-Itr-048114	Ictidomys tridecemlineatus	35.59	2.00e-60	225.00
IUUC-Lch-049747	Latimeria chalumnae	32.03	3.00e-48	185.00
IUUC-Lpe-051433	Leersia perrieri	60.47	2.00e-123	434.00
IUUC-Loc-052406	Lepisosteus oculatus	37.93	1.00e-63	236.00
IUUC-Laf-053901	Loxodonta africana	35.59	4.00e-60	224.00
IUUC-Mcc-054990	Macaca mulatta	35.59	4.00e-60	224.00
IUUC-Meu-056844	Macropus eugenii	36.75	5.00e-58	217.00
IUUC-Mtr-057759	Medicago truncatula	67.16	4.00e-131	460.00
IUUC-Mla-058856	Melampsora laricipopulina	32.67	6.00e-49	187.00
IUUC-Mga-059749	Meleagris gallopavo	36.44	8.00e-64	236.00
IUUC-Mvi-060237	Microbotryum violaceum	33.52	1.00e-57	216.00
IUUC-Mmr-061270	Microcebus murinus	36.06	3.00e-57	215.00
IUUC-Mdo-062965	Monodelphis domestica	35.43	3.00e-58	218.00
IUUC-Mmu-064081	Mus musculus	35.88	5.00e-61	227.00
IUUC-Mac-065236	Musa acuminata	66.17	3.00e-135	473.00
IUUC-Mpu-066355	Mustela putorius furo	35.59	4.00e-60	224.00
IUUC-Mlu-067630	Myotis lucifugus	35.21	4.00e-59	221.00
IUUC-Nle-069701	Nomascus leucogenys	35.59	3.00e-60	224.00
IUUC-Opr-070337	Ochotona princeps	32.20	2.00e-48	186.00
IUUC-Ont-072614	Oreochromis niloticus	36.73	5.00e-61	227.00
IUUC-Ocu-073912	Oryctolagus cuniculus	36.16	5.00e-61	227.00
IUUC-Oba-075195	Oryza barthii	62.39	3.00e-123	434.00
IUUC-Obr-076059	Oryza brachyantha	61.65	1.00e-126	445.00
IUUC-Ogl-077318	Oryza glaberrima	61.65	2.00e-126	444.00
IUUC-Ogu-078579	Oryza glumaepatula	62.01	5.00e-124	436.00
IUUC-Oin-079340	Oryza indica	61.65	2.00e-126	444.00
IUUC-Olo-080813	Oryza longistaminata	62.61	2.00e-124	437.00
IUUC-Ome-081420	Oryza meridionalis	62.08	1.00e-122	432.00
IUUC-Oni-082650	Oryza nivara	62.39	3.00e-123	434.00
IUUC-Opu-083832	Oryza punctata	62.08	8.00e-123	432.00
IUUC-Oru-084207	Oryza rufipogon	62.39	3.00e-123	434.00
IUUC-Osa-085708	Oryza sativa	61.65	2.00e-126	444.00
IUUC-Ola-087164	Oryzias latipes	36.84	2.00e-61	228.00
IUUC-Olu-087824	Ostreococcus lucimarinus	43.40	2.00e-65	242.00
IUUC-Oga-088864	Otolemur garnettii	35.59	2.00e-60	225.00
IUUC-Oar-090115	Ovis aries	35.88	8.00e-61	226.00
IUUC-Ptr-091398	Pan troglodytes	35.59	3.00e-60	224.00
IUUC-Pan-092002	Papio anubis	35.59	4.00e-60	224.00
IUUC-Psi-093979	Pelodiscus sinensis	40.00	2.00e-32	131.00
IUUC-Pma-094618	Petromyzon marinus	33.15	2.00e-54	205.00
IUUC-Ppa-095351	Physcomitrella patens	59.00	3.00e-118	417.00
IUUC-Pfo-097078	Poecilia formosa	37.03	2.00e-61	228.00
IUUC-Pab-098540	Pongo abelii	35.59	3.00e-60	224.00
IUUC-Pop-099140	Populus trichocarpa	73.75	1.00e-153	535.00
IUUC-Pca-101072	Procavia capensis	36.09	4.00e-56	211.00
IUUC-Ppe-101979	Prunus persica	74.63	1.00e-153	535.00
IUUC-Pva-102400	Pteropus vampyrus	31.40	6.00e-48	184.00
IUUC-Pgr-103362	Puccinia graminis	30.53	2.00e-47	182.00
IUUC-Ptt-103756	Puccinia triticina	33.33	6.00e-35	140.00
IUUC-Rno-105672	Rattus norvegicus	35.59	2.00e-60	225.00
IUUC-Sja-107693	Schizosaccharomyces japonicus	30.06	1.00e-48	186.00
IUUC-Spo-108208	Schizosaccharomyces pombe	29.48	3.00e-48	184.00
IUUC-Smo-109093	Selaginella moellendorffii	52.91	6.00e-102	363.00
IUUC-Sit-109978	Setaria italica	64.31	8.00e-132	462.00
IUUC-Stu-111956	Solanum tuberosum	97.66	0.00e+00	684.00
IUUC-Sbi-114189	Sorghum bicolor	63.42	2.00e-126	444.00
IUUC-Sre-115029	Sporisorium reilianum	36.28	7.00e-55	207.00
IUUC-Ssc-116045	Sus scrofa	32.10	3.00e-45	175.00
IUUC-Tgu-117514	Taeniopygia guttata	36.44	4.00e-64	237.00
IUUC-Tru-117851	Takifugu rubripes	36.68	1.00e-61	229.00
IUUC-Tsy-119140	Tarsius syrichta	33.15	4.00e-52	197.00
IUUC-Tni-120248	Tetraodon nigroviridis	37.83	6.00e-63	234.00
IUUC-Tca-121686	Theobroma cacao	68.38	2.00e-140	491.00
IUUC-Tae-125689	Triticum aestivum	62.06	3.00e-126	444.00
IUUC-Tur-126174	Triticum urartu	62.01	6.00e-122	429.00
IUUC-Tme-127079	Tuber melanosporum	28.57	4.00e-16	78.60
IUUC-Ttr-128182	Tursiops truncatus	35.59	6.00e-60	224.00
IUUC-Uma-129624	Ustilago maydis	35.19	3.00e-52	198.00
IUUC-Vpa-130605	Vicugna pacos	34.28	4.00e-47	181.00
IUUC-Vvi-131319	Vitis vinifera	69.29	5.00e-153	533.00
IUUC-Xtr-132193	Xenopus tropicalis	35.88	1.00e-63	236.00
IUUC-Xma-133880	Xiphophorus maculatus	37.03	1.00e-61	229.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence