iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-006816

UUCD1 version

UUC-ArT-00302

Ensembl Protein ID

AT2G30050.1

UniProt Accession

O64740; Q8LAX1; SC13B_ARATH

Genbank Protein ID

AAC16967.1; AAM14986.1; AEC08339.1; AAL06565.1; AAM70557.1; AAM65095.1

Protein Name

Protein transport protein SEC13 homolog B; SEC13-like protein B

Genbank Nucleotide ID

AC004165; AC004680; CP002685; AF412112; AY124848; AY087553

Gene Name

SEC13B; SEC13; At2g30050; T27E13.21

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT2G30050	AT2G30050.1	AT2G30050.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
iRefIndex	PINA	HINT	Mentha
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.40e-31	106.8	209	242

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf......sdtllvsGsdDgtikvWD 29
           Htd+v+++a+      +  +++sGs Dg++ +W 
   Q: 209  HTDWVRDVAWapnlglPKSTIASGSQDGKVIIWT 242
           ***********666654445*************6 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Required for protein transport from the endoplasmic reticulum to the Golgi apparatus.

Protein Sequence
(Fasta)

MPGQKIETGH EDIVHDVQMD YYGKRIATAS SDCTIKITGV SNNGGSQQLA TLTGHRGPVW 60
EVAWAHPKYG SILASCSYDG QVILWKEGNQ NQWTQDHVFT DHKSSVNSIA WAPHDIGLSL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TCCCTCCGGT TTTCAATTTG ACCCACCCGG TTTAGTATAC GAACTCCGGT TTATATAACT 60
TTGACCCAGA TCTAATTTTA TTTTAACCAG CAAATACAAA AAACTTCCGA TCCCCCTTAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0256--Endoplasmic reticulum
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0509--mRNA transport
KW-0906--Nuclear pore complex
KW-0539--Nucleus
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0677--Repeat
KW-0811--Translocation
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005783--C:endoplasmic reticulum
GO:0005794--C:Golgi apparatus
GO:0005635--C:nuclear envelope
GO:0005643--C:nuclear pore
GO:0005730--C:nucleolus
GO:0051028--P:mRNA transport
GO:0015031--P:protein transport
GO:0016192--P:vesicle-mediated transport

KEGG

ath:AT2G30050

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000671	Aegilops tauschii	78.76	2.00e-142	497.00
IUUC-Aml-001832	Ailuropoda melanoleuca	56.00	4.00e-91	327.00
IUUC-Atr-002914	Amborella trichopoda	77.23	2.00e-138	484.00
IUUC-Apl-003992	Anas platyrhynchos	56.21	4.00e-88	317.00
IUUC-Aca-005283	Anolis carolinensis	55.18	1.00e-91	329.00
IUUC-Aly-005654	Arabidopsis lyrata	96.36	3.00e-172	596.00
IUUC-Acl-008205	Aspergillus clavatus	48.84	8.00e-71	259.00
IUUC-Afl-008748	Aspergillus flavus	47.90	3.00e-72	264.00
IUUC-Afu-008791	Aspergillus fumigatus	48.51	5.00e-70	256.00
IUUC-Ani-009152	Aspergillus nidulans	48.52	8.00e-74	269.00
IUUC-Ang-009765	Aspergillus niger	48.10	2.00e-72	265.00
IUUC-Aor-009927	Aspergillus oryzae	47.85	2.00e-69	254.00
IUUC-Ate-010248	Aspergillus terreus	46.91	1.00e-71	262.00
IUUC-Ame-011478	Astyanax mexicanus	55.85	6.00e-92	329.00
IUUC-Bgr-012276	Blumeria graminis	49.21	6.00e-72	263.00
IUUC-Bta-012700	Bos taurus	55.67	6.00e-90	323.00
IUUC-Bci-013722	Botrytis cinerea	50.33	2.00e-74	271.00
IUUC-Bdi-014818	Brachypodium distachyon	78.43	4.00e-142	496.00
IUUC-Bol-015779	Brassica oleracea	94.68	3.00e-170	590.00
IUUC-Bra-017934	Brassica rapa	94.02	8.00e-170	588.00
IUUC-Cel-018479	Caenorhabditis elegans	39.33	5.00e-57	213.00
IUUC-Cja-019956	Callithrix jacchus	55.52	6.00e-84	303.00
IUUC-Cfa-020752	Canis familiaris	56.00	6.00e-91	326.00
IUUC-Cpo-021871	Cavia porcellus	56.00	4.00e-91	327.00
IUUC-Csa-023393	Chlorocebus sabaeus	55.00	3.00e-90	324.00
IUUC-Cho-024786	Choloepus hoffmanni	43.67	2.00e-61	228.00
IUUC-Cin-025332	Ciona intestinalis	53.82	2.00e-89	321.00
IUUC-Csv-025926	Ciona savignyi	53.67	3.00e-87	314.00
IUUC-Cgl-026413	Colletotrichum gloeosporioides	53.38	4.00e-71	260.00
IUUC-Cne-027054	Cryptococcus neoformans	44.51	4.00e-64	237.00
IUUC-Dre-027782	Danio rerio	56.52	2.00e-92	331.00
IUUC-Dno-029628	Dasypus novemcinctus	55.33	2.00e-90	325.00
IUUC-Dor-030650	Dipodomys ordii	55.36	7.00e-67	246.00
IUUC-Dse-031206	Dothistroma septosporum	48.68	3.00e-72	264.00
IUUC-Dme-031854	Drosophila melanogaster	48.66	5.00e-81	293.00
IUUC-Ete-032618	Echinops telfairi	41.21	4.00e-35	140.00
IUUC-Eca-033268	Equus caballus	56.33	4.00e-91	327.00
IUUC-Fca-035918	Felis catus	55.67	2.00e-90	324.00
IUUC-Fal-037551	Ficedula albicollis	54.11	9.00e-82	295.00
IUUC-Fox-037763	Fusarium oxysporum	51.77	6.00e-75	273.00
IUUC-Fso-038341	Fusarium solani	50.64	2.00e-73	268.00
IUUC-Gmo-038638	Gadus morhua	55.85	3.00e-91	327.00
IUUC-Ggr-039865	Gaeumannomyces graminis	50.16	7.00e-73	266.00
IUUC-Gga-040193	Gallus gallus	55.85	8.00e-92	329.00
IUUC-Gac-041337	Gasterosteus aculeatus	29.84	2.00e-33	135.00
IUUC-Gma-044311	Glycine max	84.77	7.00e-152	529.00
IUUC-Ggo-045252	Gorilla gorilla	54.67	2.00e-89	322.00
IUUC-Hsa-046565	Homo sapiens	54.67	1.00e-89	322.00
IUUC-Hvu-047835	Hordeum vulgare	79.08	7.00e-143	499.00
IUUC-Itr-048587	Ictidomys tridecemlineatus	55.67	1.00e-90	325.00
IUUC-Kpa-049148	Komagataella pastoris	47.83	7.00e-73	266.00
IUUC-Lch-050421	Latimeria chalumnae	56.19	8.00e-92	329.00
IUUC-Lpe-051187	Leersia perrieri	79.48	6.00e-148	518.00
IUUC-Loc-052167	Lepisosteus oculatus	54.49	1.00e-89	322.00
IUUC-Laf-054304	Loxodonta africana	55.67	4.00e-90	323.00
IUUC-Mcc-055519	Macaca mulatta	54.67	1.00e-89	322.00
IUUC-Meu-056439	Macropus eugenii	56.00	4.00e-91	327.00
IUUC-Mor-057241	Magnaporthe oryzae	49.66	2.00e-69	255.00
IUUC-Mpo-057373	Magnaporthe poae	46.46	1.00e-58	218.00
IUUC-Mtr-058412	Medicago truncatula	84.77	1.00e-152	531.00
IUUC-Mla-058966	Melampsora laricipopulina	45.32	7.00e-75	273.00
IUUC-Mga-060066	Meleagris gallopavo	56.21	4.00e-88	317.00
IUUC-Mvi-060290	Microbotryum violaceum	45.87	4.00e-74	273.00
IUUC-Mmr-060717	Microcebus murinus	55.67	1.00e-90	325.00
IUUC-Mdo-062496	Monodelphis domestica	56.00	4.00e-91	327.00
IUUC-Mmu-063490	Mus musculus	55.33	2.00e-90	325.00
IUUC-Mac-064519	Musa acuminata	80.53	7.00e-145	505.00
IUUC-Mpu-066601	Mustela putorius furo	56.00	6.00e-91	326.00
IUUC-Mlu-067501	Myotis lucifugus	56.00	5.00e-91	327.00
IUUC-Nfi-068360	Neosartorya fischeri	48.46	1.00e-59	222.00
IUUC-Ncr-068928	Neurospora crassa	51.80	2.00e-74	271.00
IUUC-Nle-069028	Nomascus leucogenys	54.33	2.00e-89	321.00
IUUC-Opr-070446	Ochotona princeps	55.67	2.00e-86	311.00
IUUC-Ont-071587	Oreochromis niloticus	54.67	5.00e-89	320.00
IUUC-Oan-073211	Ornithorhynchus anatinus	55.33	4.00e-90	323.00
IUUC-Ocu-074306	Oryctolagus cuniculus	55.33	7.00e-89	319.00
IUUC-Oba-075069	Oryza barthii	79.67	1.00e-142	498.00
IUUC-Obr-076667	Oryza brachyantha	79.08	4.00e-142	496.00
IUUC-Ogl-077208	Oryza glaberrima	79.67	1.00e-142	498.00
IUUC-Ogu-078513	Oryza glumaepatula	79.67	1.00e-142	498.00
IUUC-Oin-079094	Oryza indica	79.67	1.00e-142	498.00
IUUC-Olo-080473	Oryza longistaminata	79.67	1.00e-142	498.00
IUUC-Ome-081643	Oryza meridionalis	79.67	1.00e-142	498.00
IUUC-Oni-082589	Oryza nivara	79.67	1.00e-142	498.00
IUUC-Opu-083677	Oryza punctata	79.74	2.00e-143	500.00
IUUC-Oru-084537	Oryza rufipogon	79.67	1.00e-142	498.00
IUUC-Osa-085449	Oryza sativa	79.67	1.00e-142	498.00
IUUC-Ola-087226	Oryzias latipes	54.85	3.00e-90	323.00
IUUC-Oga-088837	Otolemur garnettii	55.67	1.00e-90	325.00
IUUC-Oar-089594	Ovis aries	56.00	3.00e-90	324.00
IUUC-Ptr-091132	Pan troglodytes	54.67	3.00e-89	320.00
IUUC-Psi-093568	Pelodiscus sinensis	55.82	1.00e-88	318.00
IUUC-Pma-094172	Petromyzon marinus	47.10	4.00e-34	136.00
IUUC-Ppa-095578	Physcomitrella patens	66.89	9.00e-120	422.00
IUUC-Pfo-096063	Poecilia formosa	55.52	1.00e-90	325.00
IUUC-Pab-098674	Pongo abelii	54.33	1.00e-88	319.00
IUUC-Pop-099402	Populus trichocarpa	85.38	4.00e-151	526.00
IUUC-Pca-100824	Procavia capensis	43.81	5.00e-63	234.00
IUUC-Ppe-101278	Prunus persica	85.10	3.00e-153	533.00
IUUC-Pva-103161	Pteropus vampyrus	53.49	4.00e-84	303.00
IUUC-Pgr-103573	Puccinia graminis	45.48	3.00e-71	261.00
IUUC-Ptt-103700	Puccinia triticina	45.37	1.00e-65	242.00
IUUC-Rno-104833	Rattus norvegicus	55.33	2.00e-90	325.00
IUUC-Sha-106611	Sarcophilus harrisii	56.00	4.00e-91	327.00
IUUC-Smo-108797	Selaginella moellendorffii	67.22	8.00e-123	432.00
IUUC-Sit-110132	Setaria italica	79.08	3.00e-143	500.00
IUUC-Sly-111852	Solanum lycopersicum	81.40	1.00e-148	518.00
IUUC-Stu-112195	Solanum tuberosum	82.06	2.00e-149	520.00
IUUC-Sbi-114229	Sorghum bicolor	79.41	6.00e-143	499.00
IUUC-Sre-114898	Sporisorium reilianum	44.29	9.00e-79	286.00
IUUC-Ssc-115995	Sus scrofa	59.59	2.00e-46	177.00
IUUC-Tgu-116793	Taeniopygia guttata	54.18	4.00e-85	306.00
IUUC-Tru-117797	Takifugu rubripes	54.85	2.00e-90	325.00
IUUC-Tni-120366	Tetraodon nigroviridis	54.33	1.00e-88	318.00
IUUC-Tca-121068	Theobroma cacao	84.67	2.00e-150	523.00
IUUC-Tre-121899	Trichoderma reesei	51.60	2.00e-74	271.00
IUUC-Tvi-122380	Trichoderma virens	52.09	4.00e-75	273.00
IUUC-Tae-124286	Triticum aestivum	80.07	2.00e-144	503.00
IUUC-Tur-126202	Triticum urartu	79.74	1.00e-143	501.00
IUUC-Tme-127181	Tuber melanosporum	47.60	3.00e-75	275.00
IUUC-Ttr-128448	Tursiops truncatus	55.78	2.00e-74	271.00
IUUC-Uma-129661	Ustilago maydis	45.66	4.00e-80	290.00
IUUC-Vda-129666	Verticillium dahliae	53.87	5.00e-73	266.00
IUUC-Vpa-130318	Vicugna pacos	56.00	1.00e-90	325.00
IUUC-Vvi-130868	Vitis vinifera	84.77	7.00e-153	532.00
IUUC-Xtr-131859	Xenopus tropicalis	55.85	4.00e-92	330.00
IUUC-Xma-133898	Xiphophorus maculatus	55.18	2.00e-90	324.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence