iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Xtr-132446

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Nucleoporin 43kDa

Genbank Nucleotide ID

AAMC01134560

Gene Name

nup43

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSXETG00000016373.3	ENSXETT00000035744.3	ENSXETP00000035744.3

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.20e-18	66.6	218	250

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 7    tclaf.sd..tllvsGsdDgtikvWDlrtgvll 36
           +c++  ++  + +++G+ Dg + +WD+r g+ +
   Q: 218  HCVDRhPNqqHVVATGGQDGMLCIWDVRHGKMP 250
           555545444456899*************99876 PP

Organism

Xenopus tropicalis

Protein Sequence
(Fasta)

MDDKFAAKFV SHKISRTRWR PVSASSLQQP DVFATGSWDN EENKVCVWAT SDFGAISLEE 60
EYQGDPKQLC DIRHIGDVMD MQFLDQERIV TASSTGTVTI FRHHENNQTL SVNQKWEQAH 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TGGCATAGCC AACCTCAAAA TTAAGGGTGT CATGGACGAT AAATTCGCTG CAAAATTTGT 60
CTCTCACAAA ATTAGCAGAA CTCGCTGGCG CCCAGTGTCG GCCTCGTCGC TGCAGCAACC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

SMART

SM00320--WD40

Gene Ontology

GO:0031080--C:nuclear pore outer ring

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001593	Ailuropoda melanoleuca	69.03	3.00e-153	534.00
IUUC-Atr-002526	Amborella trichopoda	29.34	2.00e-11	63.20
IUUC-Apl-003533	Anas platyrhynchos	73.12	1.00e-134	472.00
IUUC-Aca-004965	Anolis carolinensis	66.67	2.00e-152	531.00
IUUC-Aly-006431	Arabidopsis lyrata	28.24	7.00e-13	67.80
IUUC-Ath-007253	Arabidopsis thaliana	28.40	9.00e-13	67.40
IUUC-Ame-011694	Astyanax mexicanus	64.44	2.00e-126	444.00
IUUC-Bta-013161	Bos taurus	68.60	3.00e-154	537.00
IUUC-Bdi-014758	Brachypodium distachyon	25.11	3.00e-12	65.90
IUUC-Bra-017838	Brassica rapa	27.78	8.00e-09	54.30
IUUC-Cel-018567	Caenorhabditis elegans	26.54	2.00e-10	59.70
IUUC-Cja-020000	Callithrix jacchus	58.81	2.00e-125	441.00
IUUC-Cfa-021112	Canis familiaris	70.34	1.00e-158	552.00
IUUC-Cpo-022095	Cavia porcellus	67.46	2.00e-152	531.00
IUUC-Csa-023460	Chlorocebus sabaeus	68.60	3.00e-154	537.00
IUUC-Cho-024279	Choloepus hoffmanni	70.29	6.00e-134	469.00
IUUC-Cin-025360	Ciona intestinalis	36.01	5.00e-61	227.00
IUUC-Csv-026301	Ciona savignyi	36.86	2.00e-53	201.00
IUUC-Dre-028097	Danio rerio	60.92	2.00e-137	481.00
IUUC-Dno-029131	Dasypus novemcinctus	69.92	7.00e-156	543.00
IUUC-Dor-030496	Dipodomys ordii	59.95	6.00e-128	450.00
IUUC-Dme-031834	Drosophila melanogaster	29.38	1.00e-44	173.00
IUUC-Ete-032448	Echinops telfairi	68.00	3.00e-125	441.00
IUUC-Eca-034409	Equus caballus	69.39	2.00e-157	548.00
IUUC-Eeu-035343	Erinaceus europaeus	72.17	8.00e-89	320.00
IUUC-Fca-036177	Felis catus	69.39	1.00e-156	545.00
IUUC-Fal-037657	Ficedula albicollis	67.03	6.00e-145	506.00
IUUC-Gmo-038946	Gadus morhua	66.30	4.00e-145	507.00
IUUC-Gga-041070	Gallus gallus	69.05	7.00e-148	516.00
IUUC-Gac-042442	Gasterosteus aculeatus	65.50	1.00e-148	519.00
IUUC-Gma-043812	Glycine max	24.67	1.00e-11	63.90
IUUC-Ggo-045223	Gorilla gorilla	68.34	4.00e-155	540.00
IUUC-Hsa-045956	Homo sapiens	68.60	4.00e-156	543.00
IUUC-Itr-048116	Ictidomys tridecemlineatus	69.21	4.00e-155	540.00
IUUC-Lch-050035	Latimeria chalumnae	70.19	4.00e-162	563.00
IUUC-Laf-053404	Loxodonta africana	67.11	1.00e-148	519.00
IUUC-Mcc-055813	Macaca mulatta	68.87	1.00e-154	539.00
IUUC-Meu-056388	Macropus eugenii	72.99	1.00e-89	323.00
IUUC-Mga-060193	Meleagris gallopavo	68.44	8.00e-157	546.00
IUUC-Mmr-060818	Microcebus murinus	69.92	6.00e-157	546.00
IUUC-Mdo-062822	Monodelphis domestica	69.55	3.00e-156	544.00
IUUC-Mmu-064182	Mus musculus	69.13	4.00e-155	540.00
IUUC-Mpu-066865	Mustela putorius furo	70.00	5.00e-140	490.00
IUUC-Mlu-067329	Myotis lucifugus	65.96	4.00e-146	510.00
IUUC-Nle-069093	Nomascus leucogenys	69.13	2.00e-156	544.00
IUUC-Opr-070481	Ochotona princeps	63.52	2.00e-140	491.00
IUUC-Ont-072445	Oreochromis niloticus	65.23	7.00e-150	523.00
IUUC-Oan-073029	Ornithorhynchus anatinus	66.13	4.00e-142	497.00
IUUC-Ocu-074275	Oryctolagus cuniculus	69.39	9.00e-156	542.00
IUUC-Ola-086862	Oryzias latipes	62.53	1.00e-136	479.00
IUUC-Oga-088952	Otolemur garnettii	69.74	7.00e-157	546.00
IUUC-Oar-089300	Ovis aries	69.13	1.00e-155	542.00
IUUC-Ptr-091389	Pan troglodytes	68.87	3.00e-156	544.00
IUUC-Pan-092174	Papio anubis	68.87	2.00e-154	538.00
IUUC-Psi-093326	Pelodiscus sinensis	70.09	2.00e-144	504.00
IUUC-Pfo-096331	Poecilia formosa	65.22	3.00e-149	521.00
IUUC-Pab-098306	Pongo abelii	68.87	7.00e-156	543.00
IUUC-Pop-099166	Populus trichocarpa	27.52	1.00e-10	60.50
IUUC-Pca-100455	Procavia capensis	62.00	5.00e-52	198.00
IUUC-Ppe-101380	Prunus persica	28.09	5.00e-12	65.10
IUUC-Pva-102578	Pteropus vampyrus	67.55	1.00e-151	528.00
IUUC-Rno-105146	Rattus norvegicus	68.60	2.00e-148	518.00
IUUC-Sha-107640	Sarcophilus harrisii	69.37	2.00e-155	541.00
IUUC-Sly-111767	Solanum lycopersicum	24.23	1.00e-11	63.90
IUUC-Stu-112515	Solanum tuberosum	24.23	1.00e-11	63.90
IUUC-Sar-113681	Sorex araneus	73.47	5.00e-83	301.00
IUUC-Sbi-113809	Sorghum bicolor	27.60	4.00e-07	48.90
IUUC-Ssc-116129	Sus scrofa	68.07	3.00e-153	534.00
IUUC-Tgu-117456	Taeniopygia guttata	66.35	8.00e-80	289.00
IUUC-Tru-117630	Takifugu rubripes	66.94	1.00e-99	355.00
IUUC-Tsy-119331	Tarsius syrichta	69.92	9.00e-159	552.00
IUUC-Tni-120077	Tetraodon nigroviridis	63.07	4.00e-139	487.00
IUUC-Tca-121814	Theobroma cacao	29.78	3.00e-10	59.70
IUUC-Tae-123605	Triticum aestivum	26.46	7.00e-13	67.80
IUUC-Tbe-127359	Tupaia belangeri	62.57	1.00e-131	462.00
IUUC-Ttr-128461	Tursiops truncatus	68.07	7.00e-152	530.00
IUUC-Vpa-130162	Vicugna pacos	67.81	7.00e-151	526.00
IUUC-Vvi-131114	Vitis vinifera	31.58	5.00e-13	68.60

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence