iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Obr-076799

Ensembl Protein ID

OB07G18490.1

UniProt Accession

J3MKB7; J3MKB7_ORYBR

Protein Name

Ribosome biogenesis protein BOP1 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
OB07G18490	OB07G18490.1	OB07G18490.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.70e-10	40.4	343	381

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH++ v +l+  s+   ++sGs Dgti+vW++ tg+++k
   Q: 343  GHNGQVKSLSVeSTgQWVASGSSDGTIRVWEVETGRCIK 381
           8***********77799********************87 PP

Organism

Oryza brachyantha

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MGHSDGDHES DLSADDSPWS EGSWSDDDEE GSLSFEDSGE GSDAESDEPD AAAAEESDSS 60
EDEVAPRNTV GDVPLEWYKD EEHIGYDITG SKIKKRDREG RIEAYLRNAD DAKSWRKIYD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGGGCATA GCGACGGTGA CCACGAGAGC GACCTCTCCG CCGACGATTC TCCGTGGAGC 60
GAGGGTAGCT GGTCCGACGA CGACGAGGAG GTGAGGCTCT CCTCTTCGAA GGATTTCGAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR028598--BOP1/Erb1
IPR012953--BOP1_N_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08145--BOP1NT
PF00400--WD40

SMART

SM01035--BOP1NT
SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

obr:102722233

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001158	Aegilops tauschii	79.70	0.00e+00	945.00
IUUC-Aml-001507	Ailuropoda melanoleuca	42.33	2.00e-134	472.00
IUUC-Atr-003141	Amborella trichopoda	64.37	1.00e-160	558.00
IUUC-Apl-003545	Anas platyrhynchos	42.43	1.00e-128	452.00
IUUC-Aly-005649	Arabidopsis lyrata	64.98	0.00e+00	847.00
IUUC-Ath-007625	Arabidopsis thaliana	61.16	0.00e+00	828.00
IUUC-Ago-007958	Ashbya gossypii	39.85	2.00e-140	492.00
IUUC-Acl-008344	Aspergillus clavatus	41.18	3.00e-123	434.00
IUUC-Afl-008616	Aspergillus flavus	39.66	5.00e-124	437.00
IUUC-Afu-009083	Aspergillus fumigatus	41.23	3.00e-118	418.00
IUUC-Ani-009365	Aspergillus nidulans	39.97	4.00e-123	434.00
IUUC-Ang-009796	Aspergillus niger	38.88	7.00e-121	427.00
IUUC-Aor-010015	Aspergillus oryzae	39.66	5.00e-124	437.00
IUUC-Ate-010537	Aspergillus terreus	39.44	3.00e-128	451.00
IUUC-Ame-011767	Astyanax mexicanus	47.58	7.00e-70	255.00
IUUC-Bgr-012286	Blumeria graminis	41.12	2.00e-139	488.00
IUUC-Bta-013569	Bos taurus	45.04	2.00e-149	522.00
IUUC-Bci-013820	Botrytis cinerea	40.89	2.00e-128	452.00
IUUC-Bdi-014477	Brachypodium distachyon	88.29	0.00e+00	1122.00
IUUC-Bol-016099	Brassica oleracea	66.18	0.00e+00	872.00
IUUC-Bra-017174	Brassica rapa	66.07	0.00e+00	879.00
IUUC-Cel-018201	Caenorhabditis elegans	41.20	5.00e-129	454.00
IUUC-Cja-019009	Callithrix jacchus	40.65	2.00e-128	452.00
IUUC-Cfa-020173	Canis familiaris	40.70	1.00e-137	483.00
IUUC-Cpo-021796	Cavia porcellus	45.15	2.00e-147	515.00
IUUC-Cre-022650	Chlamydomonas reinhardtii	49.21	9.00e-171	592.00
IUUC-Csa-023440	Chlorocebus sabaeus	44.75	2.00e-152	531.00
IUUC-Cin-025782	Ciona intestinalis	44.85	2.00e-155	542.00
IUUC-Csv-026352	Ciona savignyi	42.59	3.00e-146	511.00
IUUC-Cgl-026393	Colletotrichum gloeosporioides	36.08	1.00e-104	372.00
IUUC-Cne-027004	Cryptococcus neoformans	43.75	9.00e-155	540.00
IUUC-Cme-027242	Cyanidioschyzon merolae	34.52	1.00e-105	376.00
IUUC-Dre-028658	Danio rerio	46.06	2.00e-164	571.00
IUUC-Dno-028883	Dasypus novemcinctus	45.23	5.00e-151	527.00
IUUC-Dor-031031	Dipodomys ordii	43.86	2.00e-150	525.00
IUUC-Dse-031443	Dothistroma septosporum	38.74	2.00e-122	431.00
IUUC-Dme-031786	Drosophila melanogaster	42.58	5.00e-155	540.00
IUUC-Eca-033677	Equus caballus	45.40	3.00e-148	518.00
IUUC-Eeu-035310	Erinaceus europaeus	41.12	1.00e-112	399.00
IUUC-Fca-035888	Felis catus	42.74	5.00e-142	497.00
IUUC-Fal-037438	Ficedula albicollis	47.11	6.00e-134	470.00
IUUC-Fox-037973	Fusarium oxysporum	40.74	5.00e-143	500.00
IUUC-Fso-038187	Fusarium solani	40.53	1.00e-139	489.00
IUUC-Gmo-039114	Gadus morhua	43.30	1.00e-140	492.00
IUUC-Ggr-039746	Gaeumannomyces graminis	40.67	5.00e-145	507.00
IUUC-Gga-040631	Gallus gallus	49.85	2.00e-95	341.00
IUUC-Gac-042582	Gasterosteus aculeatus	43.98	2.00e-146	511.00
IUUC-Gma-044215	Glycine max	64.00	0.00e+00	862.00
IUUC-Ggo-045587	Gorilla gorilla	44.59	6.00e-152	530.00
IUUC-Hsa-046319	Homo sapiens	44.59	5.00e-152	530.00
IUUC-Hvu-047526	Hordeum vulgare	82.79	0.00e+00	1073.00
IUUC-Itr-048683	Ictidomys tridecemlineatus	45.37	5.00e-150	523.00
IUUC-Kpa-049221	Komagataella pastoris	38.58	2.00e-130	458.00
IUUC-Lch-049640	Latimeria chalumnae	46.03	5.00e-167	580.00
IUUC-Lpe-051135	Leersia perrieri	89.87	0.00e+00	1075.00
IUUC-Loc-051930	Lepisosteus oculatus	47.41	7.00e-165	572.00
IUUC-Lma-053290	Leptosphaeria maculans	42.22	1.00e-131	463.00
IUUC-Laf-053903	Loxodonta africana	42.77	1.00e-132	466.00
IUUC-Mcc-055471	Macaca mulatta	44.59	4.00e-152	531.00
IUUC-Meu-056190	Macropus eugenii	45.18	3.00e-149	521.00
IUUC-Mor-057135	Magnaporthe oryzae	40.50	3.00e-137	481.00
IUUC-Mpo-057475	Magnaporthe poae	39.59	2.00e-135	475.00
IUUC-Mtr-058689	Medicago truncatula	60.99	0.00e+00	810.00
IUUC-Mla-059149	Melampsora laricipopulina	43.19	2.00e-144	504.00
IUUC-Mga-059645	Meleagris gallopavo	45.97	2.00e-58	217.00
IUUC-Mvi-060485	Microbotryum violaceum	41.57	9.00e-135	474.00
IUUC-Mmr-061674	Microcebus murinus	44.55	4.00e-147	514.00
IUUC-Mdo-062973	Monodelphis domestica	43.76	2.00e-155	542.00
IUUC-Mmu-064180	Mus musculus	42.50	3.00e-151	527.00
IUUC-Mac-064535	Musa acuminata	66.73	0.00e+00	660.00
IUUC-Mpu-066406	Mustela putorius furo	45.07	1.00e-153	535.00
IUUC-Mlu-067795	Myotis lucifugus	44.88	3.00e-141	494.00
IUUC-Nfi-068516	Neosartorya fischeri	39.75	1.00e-113	403.00
IUUC-Ncr-068767	Neurospora crassa	41.20	4.00e-130	457.00
IUUC-Opr-071084	Ochotona princeps	45.58	1.00e-63	236.00
IUUC-Ont-071614	Oreochromis niloticus	43.91	2.00e-155	541.00
IUUC-Oba-075980	Oryza barthii	91.45	0.00e+00	1123.00
IUUC-Ogl-077134	Oryza glaberrima	96.76	0.00e+00	1206.00
IUUC-Ogu-078655	Oryza glumaepatula	92.77	0.00e+00	1165.00
IUUC-Oin-079654	Oryza indica	96.76	0.00e+00	1175.00
IUUC-Olo-080706	Oryza longistaminata	91.74	0.00e+00	1131.00
IUUC-Ome-081716	Oryza meridionalis	76.51	0.00e+00	894.00
IUUC-Oni-082508	Oryza nivara	90.43	0.00e+00	1125.00
IUUC-Opu-083707	Oryza punctata	91.15	0.00e+00	1104.00
IUUC-Oru-084453	Oryza rufipogon	91.74	0.00e+00	1131.00
IUUC-Osa-085811	Oryza sativa	96.76	0.00e+00	1206.00
IUUC-Ola-087361	Oryzias latipes	45.96	3.00e-159	554.00
IUUC-Oga-088015	Otolemur garnettii	44.82	1.00e-154	539.00
IUUC-Oar-090058	Ovis aries	48.45	3.00e-45	175.00
IUUC-Ptr-090631	Pan troglodytes	43.14	1.00e-55	209.00
IUUC-Pan-092306	Papio anubis	44.84	5.00e-152	530.00
IUUC-Pma-094622	Petromyzon marinus	46.28	6.00e-163	566.00
IUUC-Pno-094794	Phaeosphaeria nodorum	38.76	5.00e-119	421.00
IUUC-Ppa-095528	Physcomitrella patens	55.91	6.00e-152	530.00
IUUC-Pfo-096682	Poecilia formosa	44.66	1.00e-156	546.00
IUUC-Pab-097939	Pongo abelii	44.96	2.00e-139	488.00
IUUC-Pop-099043	Populus trichocarpa	69.91	0.00e+00	820.00
IUUC-Pca-100333	Procavia capensis	44.07	2.00e-148	518.00
IUUC-Ppe-102078	Prunus persica	63.44	0.00e+00	819.00
IUUC-Pgr-103525	Puccinia graminis	44.60	2.00e-137	482.00
IUUC-Ptt-103929	Puccinia triticina	44.25	5.00e-132	464.00
IUUC-Pte-104029	Pyrenophora teres	41.51	1.00e-139	489.00
IUUC-Pyt-104446	Pyrenophora triticirepentis	41.51	2.00e-139	488.00
IUUC-Rno-105248	Rattus norvegicus	45.53	6.00e-151	526.00
IUUC-Sce-106381	Saccharomyces cerevisiae	38.64	1.00e-136	479.00
IUUC-Sha-106519	Sarcophilus harrisii	46.29	6.00e-156	543.00
IUUC-Sja-107908	Schizosaccharomyces japonicus	40.57	4.00e-129	454.00
IUUC-Spo-108071	Schizosaccharomyces pombe	39.91	2.00e-128	452.00
IUUC-Smo-109604	Selaginella moellendorffii	59.75	0.00e+00	754.00
IUUC-Sit-109742	Setaria italica	87.22	0.00e+00	1162.00
IUUC-Sly-110970	Solanum lycopersicum	73.18	1.00e-149	521.00
IUUC-Stu-112593	Solanum tuberosum	69.17	0.00e+00	892.00
IUUC-Sar-113123	Sorex araneus	42.77	2.00e-63	234.00
IUUC-Sbi-113945	Sorghum bicolor	88.78	0.00e+00	1126.00
IUUC-Sre-115188	Sporisorium reilianum	40.23	4.00e-133	468.00
IUUC-Ssc-115352	Sus scrofa	44.01	2.00e-151	528.00
IUUC-Tru-117685	Takifugu rubripes	45.30	7.00e-157	546.00
IUUC-Tni-119982	Tetraodon nigroviridis	44.37	7.00e-150	523.00
IUUC-Tca-121664	Theobroma cacao	66.41	0.00e+00	904.00
IUUC-Tre-122229	Trichoderma reesei	41.95	7.00e-127	447.00
IUUC-Tvi-122576	Trichoderma virens	41.95	5.00e-129	454.00
IUUC-Tae-124110	Triticum aestivum	85.85	0.00e+00	1021.00
IUUC-Tur-126781	Triticum urartu	80.03	0.00e+00	932.00
IUUC-Tme-127080	Tuber melanosporum	44.01	2.00e-153	535.00
IUUC-Ttr-128514	Tursiops truncatus	42.43	1.00e-94	339.00
IUUC-Uma-129556	Ustilago maydis	40.70	2.00e-131	462.00
IUUC-Vda-129715	Verticillium dahliae	41.53	2.00e-137	482.00
IUUC-Vvi-131211	Vitis vinifera	62.29	0.00e+00	860.00
IUUC-Xma-133883	Xiphophorus maculatus	44.50	1.00e-151	529.00
IUUC-Yli-134438	Yarrowia lipolytica	40.72	5.00e-131	461.00
IUUC-Zma-135341	Zea mays	77.27	0.00e+00	1061.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence