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Tag Content
UUCD2 ID IUUC-Ssc-115371
UUCD1 version UUC-SuS-00751
Ensembl Protein ID ENSSSCP00000003900.2
UniProt Accession F1SVA6; F1SVA6_PIG
Genbank Protein ID ENSSSCP00000003900
Protein Name Uncharacterized protein
Genbank Nucleotide ID FP565415
Gene Name SNRNP40
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSSSCG00000003596.2 ENSSSCT00000003991.2 ENSSSCP00000003900.2
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 1.70e-46 154.4 150 184
UBD/Beta-Prp 1.30e-79 267.8 63 266
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 1    gHtdsvtclaf..sd.tllvsGsdDgtikvWDlrt 32
           gHt+ v+++     +  l+++GsdDgt+k+WD+r+
   Q: 150  GHTSFVNSCYParRGpQLVCTGSDDGTVKLWDIRK 184
           8*******9659955588999***********876 PP
   

   UBD/Beta-Prp
   S: 48   lsgheaevtavkfspdgkilvtgseDrtikvwdls.tgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsg 135
           lsghe+ev+++kf+p+g++l++++ Dr+i +w++  +++   tlkgh+  v+ l+++ +g+ l s+s d+t+ vwd etg+ ++  l+g
   Q: 63   LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYgDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVK-RLKG 150
           7*******************************8765999*********************************************.**** PP
   S: 136  hdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtd 223
           h+++vn+      g +l+ +Gs+D+tv+lWd++ +  ++t++  +t +v  ++f++++ +++sg+ d+++k+wdl++++  +t++gh d
   Q: 151  HTSFVNSCYPARRGpQLVCTGSDDGTVKLWDIRKKAAIQTFQ--NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 237
           *****************************************7..6******************************************** PP
   S: 224  nvksvrfspnderlvsgssDgsiriWdlr 252
            v+ + +s+++ +l+s ++D+++r+Wd+r
   Q: 238  SVTGLSLSSEGSYLLSNAMDNTVRVWDVR 266
           ***************************97 PP
   
Organism Sus scrofa
Protein Sequence
(Fasta)
MIEQQKRKGP ELPLVPVKRQ RHELLLGAAG SGPGAGQQQA APGALLQAGP PRCSSLQAPI 60
MLLSGHEGEV YCCKFHPNGS TLASAGFDRL ILLWNVYGDC DNYATLKGHS GAVMELHYNT 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Ssc-115371|E3,WD_repeat;UBD,Beta-Prp|Sus scrofa
Please wait for a moment...
Nucleotide Sequence
(Fasta)
AAGCCGATTG GTTTCTCCAA GCCGGAAGTT CTAAGGGAAA GACTAAGTCG GAGCCAATCG 60
TGCGCTCCCT GAGGGTGTCG GCGCGGTCAG TGGCGGCCTG AGGAGAGCGG TTGCCGCCAT 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Ssc-115371|E3,WD_repeat;UBD,Beta-Prp|Sus scrofa
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0853--WD repeat
Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00320--WD40
Gene Ontology

GO:0071013--C:catalytic step 2 spliceosome
GO:0005829--C:cytosol
GO:0016607--C:nuclear speck
GO:0071011--C:precatalytic spliceosome
GO:0005682--C:U5 snRNP
GO:0003723--F:RNA binding
GO:0008380--P:RNA splicing
KEGG ssc:100624754
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000138 Aegilops tauschii 58.71 1.00e-119 422.00
IUUC-Aml-001428 Ailuropoda melanoleuca 96.78 0.00e+00 625.00
IUUC-Atr-003164 Amborella trichopoda 58.99 6.00e-122 429.00
IUUC-Apl-003447 Anas platyrhynchos 97.21 2.00e-162 564.00
IUUC-Aca-004270 Anolis carolinensis 91.26 3.00e-169 587.00
IUUC-Aly-005659 Arabidopsis lyrata 61.13 1.00e-124 439.00
IUUC-Ath-006764 Arabidopsis thaliana 61.81 7.00e-124 436.00
IUUC-Acl-008324 Aspergillus clavatus 47.37 2.00e-94 338.00
IUUC-Afl-008607 Aspergillus flavus 49.66 1.00e-89 322.00
IUUC-Afu-008998 Aspergillus fumigatus 47.08 3.00e-94 338.00
IUUC-Ani-009363 Aspergillus nidulans 49.05 1.00e-95 342.00
IUUC-Ang-009513 Aspergillus niger 48.51 4.00e-85 307.00
IUUC-Aor-010237 Aspergillus oryzae 47.95 5.00e-96 343.00
IUUC-Ate-010374 Aspergillus terreus 46.20 2.00e-83 301.00
IUUC-Ame-010728 Astyanax mexicanus 83.61 2.00e-171 594.00
IUUC-Bgr-012297 Blumeria graminis 46.15 2.00e-70 258.00
IUUC-Bta-012433 Bos taurus 100.00 0.00e+00 655.00
IUUC-Bci-013763 Botrytis cinerea 50.79 2.00e-95 342.00
IUUC-Bdi-014490 Brachypodium distachyon 58.92 1.00e-119 422.00
IUUC-Bol-016479 Brassica oleracea 60.44 2.00e-124 438.00
IUUC-Bra-017219 Brassica rapa 62.14 3.00e-124 438.00
IUUC-Cel-018512 Caenorhabditis elegans 56.25 4.00e-114 403.00
IUUC-Cja-019308 Callithrix jacchus 98.88 0.00e+00 657.00
IUUC-Cfa-020998 Canis familiaris 99.72 0.00e+00 661.00
IUUC-Cpo-021580 Cavia porcellus 98.60 0.00e+00 655.00
IUUC-Cre-022859 Chlamydomonas reinhardtii 53.37 7.00e-108 383.00
IUUC-Csa-023456 Chlorocebus sabaeus 96.37 0.00e+00 657.00
IUUC-Cho-024644 Choloepus hoffmanni 99.68 1.00e-179 621.00
IUUC-Cin-025463 Ciona intestinalis 58.84 1.00e-126 446.00
IUUC-Cgl-026497 Colletotrichum gloeosporioides 48.10 2.00e-94 338.00
IUUC-Cne-026780 Cryptococcus neoformans 41.96 2.00e-67 248.00
IUUC-Dre-027671 Danio rerio 81.39 6.00e-177 612.00
IUUC-Dno-029769 Dasypus novemcinctus 98.88 0.00e+00 665.00
IUUC-Dor-030776 Dipodomys ordii 98.31 3.00e-86 311.00
IUUC-Dse-031316 Dothistroma septosporum 43.40 2.00e-86 312.00
IUUC-Dme-031756 Drosophila melanogaster 61.78 6.00e-125 439.00
IUUC-Ete-032753 Echinops telfairi 89.94 7.00e-165 572.00
IUUC-Eca-033979 Equus caballus 99.72 0.00e+00 655.00
IUUC-Eeu-034862 Erinaceus europaeus 100.00 2.00e-72 265.00
IUUC-Fca-036110 Felis catus 99.68 3.00e-160 557.00
IUUC-Fal-037648 Ficedula albicollis 97.10 6.00e-177 612.00
IUUC-Fox-037861 Fusarium oxysporum 46.28 9.00e-92 329.00
IUUC-Fso-038405 Fusarium solani 46.28 2.00e-91 328.00
IUUC-Gmo-039383 Gadus morhua 82.50 3.00e-172 597.00
IUUC-Ggr-040082 Gaeumannomyces graminis 45.43 8.00e-84 303.00
IUUC-Gga-040785 Gallus gallus 91.14 3.00e-180 624.00
IUUC-Gac-041645 Gasterosteus aculeatus 83.06 5.00e-170 589.00
IUUC-Gma-044329 Glycine max 60.57 5.00e-123 433.00
IUUC-Ggo-044800 Gorilla gorilla 86.88 1.00e-158 551.00
IUUC-Hsa-045918 Homo sapiens 96.37 0.00e+00 657.00
IUUC-Hvu-047342 Hordeum vulgare 58.71 3.00e-119 421.00
IUUC-Itr-048047 Ictidomys tridecemlineatus 99.09 4.00e-113 399.00
IUUC-Kpa-049149 Komagataella pastoris 34.30 8.00e-37 147.00
IUUC-Lch-050395 Latimeria chalumnae 86.91 0.00e+00 652.00
IUUC-Lpe-051275 Leersia perrieri 58.75 7.00e-121 427.00
IUUC-Loc-052666 Lepisosteus oculatus 85.36 1.00e-172 598.00
IUUC-Lma-053129 Leptosphaeria maculans 45.25 5.00e-88 317.00
IUUC-Laf-054512 Loxodonta africana 96.65 0.00e+00 650.00
IUUC-Mcc-055819 Macaca mulatta 96.37 0.00e+00 656.00
IUUC-Meu-056350 Macropus eugenii 83.10 3.00e-159 554.00
IUUC-Mor-057063 Magnaporthe oryzae 48.42 7.00e-92 330.00
IUUC-Mpo-057369 Magnaporthe poae 46.37 2.00e-84 305.00
IUUC-Mtr-058228 Medicago truncatula 59.62 2.00e-122 431.00
IUUC-Mla-059093 Melampsora laricipopulina 42.38 2.00e-69 255.00
IUUC-Mga-059719 Meleagris gallopavo 96.82 2.00e-178 617.00
IUUC-Mvi-060285 Microbotryum violaceum 40.06 1.00e-63 236.00
IUUC-Mmr-061685 Microcebus murinus 93.30 7.00e-172 595.00
IUUC-Mdo-062121 Monodelphis domestica 91.97 0.00e+00 636.00
IUUC-Mmu-063216 Mus musculus 98.32 0.00e+00 666.00
IUUC-Mac-065463 Musa acuminata 55.62 4.00e-110 390.00
IUUC-Mpu-066390 Mustela putorius furo 99.44 0.00e+00 671.00
IUUC-Mlu-066932 Myotis lucifugus 99.12 0.00e+00 627.00
IUUC-Nfi-068509 Neosartorya fischeri 49.37 2.00e-94 338.00
IUUC-Ncr-068870 Neurospora crassa 47.50 6.00e-93 333.00
IUUC-Nle-069539 Nomascus leucogenys 96.37 0.00e+00 655.00
IUUC-Opr-070555 Ochotona princeps 87.15 4.00e-168 583.00
IUUC-Ont-071490 Oreochromis niloticus 81.99 2.00e-169 588.00
IUUC-Oan-073044 Ornithorhynchus anatinus 79.61 7.00e-155 539.00
IUUC-Ocu-073764 Oryctolagus cuniculus 99.44 0.00e+00 672.00
IUUC-Oba-075704 Oryza barthii 58.75 8.00e-121 426.00
IUUC-Obr-076455 Oryza brachyantha 59.06 2.00e-120 425.00
IUUC-Ogl-077382 Oryza glaberrima 59.06 5.00e-121 426.00
IUUC-Ogu-078739 Oryza glumaepatula 58.75 7.00e-121 426.00
IUUC-Oin-079072 Oryza indica 58.75 7.00e-121 426.00
IUUC-Olo-080809 Oryza longistaminata 58.75 7.00e-121 426.00
IUUC-Ome-081677 Oryza meridionalis 58.75 2.00e-120 424.00
IUUC-Oni-082937 Oryza nivara 58.75 7.00e-121 426.00
IUUC-Opu-083510 Oryza punctata 58.75 7.00e-121 426.00
IUUC-Oru-084360 Oryza rufipogon 58.75 1.00e-120 426.00
IUUC-Osa-085640 Oryza sativa 58.75 9.00e-121 426.00
IUUC-Ola-086504 Oryzias latipes 82.50 1.00e-171 595.00
IUUC-Olu-087869 Ostreococcus lucimarinus 41.64 2.00e-63 234.00
IUUC-Oga-088773 Otolemur garnettii 99.44 0.00e+00 659.00
IUUC-Oar-089677 Ovis aries 99.17 0.00e+00 650.00
IUUC-Ptr-090724 Pan troglodytes 96.21 0.00e+00 626.00
IUUC-Pan-092683 Papio anubis 96.37 0.00e+00 657.00
IUUC-Psi-093415 Pelodiscus sinensis 98.05 2.00e-176 610.00
IUUC-Pma-094562 Petromyzon marinus 75.14 3.00e-167 580.00
IUUC-Pno-095014 Phaeosphaeria nodorum 48.84 1.00e-88 320.00
IUUC-Ppa-095728 Physcomitrella patens 57.79 7.00e-122 429.00
IUUC-Pfo-096579 Poecilia formosa 82.22 5.00e-169 586.00
IUUC-Pab-098313 Pongo abelii 96.37 0.00e+00 657.00
IUUC-Pop-099747 Populus trichocarpa 61.49 2.00e-123 435.00
IUUC-Pca-100871 Procavia capensis 85.36 3.00e-130 457.00
IUUC-Ppe-101389 Prunus persica 61.13 2.00e-124 438.00
IUUC-Pva-102468 Pteropus vampyrus 85.75 8.00e-151 526.00
IUUC-Pgr-103523 Puccinia graminis 41.77 5.00e-73 267.00
IUUC-Ptt-103930 Puccinia triticina 41.69 1.00e-72 266.00
IUUC-Pte-104299 Pyrenophora teres 48.43 3.00e-94 337.00
IUUC-Pyt-104564 Pyrenophora triticirepentis 49.06 2.00e-94 338.00
IUUC-Rno-105796 Rattus norvegicus 98.88 0.00e+00 659.00
IUUC-Sha-107191 Sarcophilus harrisii 91.69 0.00e+00 636.00
IUUC-Sja-107952 Schizosaccharomyces japonicus 38.78 6.00e-64 237.00
IUUC-Spo-108249 Schizosaccharomyces pombe 43.81 2.00e-80 291.00
IUUC-Ssl-108448 Sclerotinia sclerotiorum 49.84 1.00e-94 339.00
IUUC-Sit-110805 Setaria italica 57.81 1.00e-119 422.00
IUUC-Sly-111567 Solanum lycopersicum 61.51 1.00e-125 442.00
IUUC-Stu-112562 Solanum tuberosum 61.32 1.00e-126 445.00
IUUC-Sar-112991 Sorex araneus 98.63 1.00e-120 424.00
IUUC-Sbi-114010 Sorghum bicolor 58.04 3.00e-119 421.00
IUUC-Sre-114947 Sporisorium reilianum 42.99 4.00e-74 271.00
IUUC-Tgu-117429 Taeniopygia guttata 94.46 1.00e-174 605.00
IUUC-Tru-118081 Takifugu rubripes 83.33 6.00e-173 599.00
IUUC-Tsy-119101 Tarsius syrichta 87.43 5.00e-160 556.00
IUUC-Tni-120532 Tetraodon nigroviridis 83.06 6.00e-170 589.00
IUUC-Tca-121373 Theobroma cacao 61.20 2.00e-125 441.00
IUUC-Tre-122050 Trichoderma reesei 45.63 2.00e-90 325.00
IUUC-Tvi-122394 Trichoderma virens 44.82 9.00e-85 306.00
IUUC-Tae-124661 Triticum aestivum 58.84 8.00e-119 419.00
IUUC-Tme-126998 Tuber melanosporum 51.46 2.00e-94 338.00
IUUC-Tbe-128032 Tupaia belangeri 99.16 0.00e+00 660.00
IUUC-Ttr-129102 Tursiops truncatus 89.39 2.00e-160 558.00
IUUC-Uma-129363 Ustilago maydis 43.61 1.00e-77 282.00
IUUC-Vda-129891 Verticillium dahliae 49.21 1.00e-93 336.00
IUUC-Vpa-130827 Vicugna pacos 99.16 0.00e+00 652.00
IUUC-Vvi-131202 Vitis vinifera 60.57 8.00e-124 436.00
IUUC-Xtr-132769 Xenopus tropicalis 82.88 6.00e-170 589.00
IUUC-Xma-133147 Xiphophorus maculatus 82.22 1.00e-168 585.00
IUUC-Yli-134352 Yarrowia lipolytica 34.11 2.00e-36 145.00
IUUC-Zma-135294 Zea mays 58.04 6.00e-119 420.00
Created Date 25-Jun-2017

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