iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
microRNA	TRANSFAC	miRNAMap	RAID2
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.90e-20	70.9	484	515

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 4    dsvtclaf...sdtllvsGsdDgtikvWDlrt 32
           ++v+cl+f   ++ ll++G   g++kvW l+t
   Q: 484  SPVYCLEFnsqQTQLLAAGDAKGVVKVWQLST 515
           79******97433889999999******9877 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MAISASPRPF PRVGSARVAA LAAGGAGGGE RRGRPAPLQD ETLGVASVPS QWRSVQGIRG 60
EPKSCQTAGI ATAEASAQAR THADAQVQTE APEEPAAVAP VSQYDTLRLA AFLRRVEAMV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGTTCATTGG TAGAACATAG GGGTTGGCTT CCAGGAAGTC CCCGGATTCA ACCCCAGCAC 60
ATCAAAAGGC AAAACAGCCA ACTAACAAAC AAACAAATAG TAGCTTTTGT AGGCTAAGGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005868--C:cytoplasmic dynein complex
GO:0005829--C:cytosol
GO:0060271--P:cilium assembly

KEGG

rno:296618

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002326	Ailuropoda melanoleuca	85.69	0.00e+00	847.00
IUUC-Apl-004015	Anas platyrhynchos	67.65	0.00e+00	634.00
IUUC-Ame-010762	Astyanax mexicanus	52.71	3.00e-148	518.00
IUUC-Bta-013392	Bos taurus	84.49	0.00e+00	887.00
IUUC-Cja-019374	Callithrix jacchus	84.89	0.00e+00	852.00
IUUC-Cfa-020365	Canis familiaris	86.45	0.00e+00	828.00
IUUC-Csa-023810	Chlorocebus sabaeus	85.49	0.00e+00	882.00
IUUC-Cho-024515	Choloepus hoffmanni	78.88	8.00e-166	576.00
IUUC-Cin-025690	Ciona intestinalis	29.71	2.00e-56	213.00
IUUC-Csv-026220	Ciona savignyi	30.38	1.00e-53	204.00
IUUC-Dre-028439	Danio rerio	51.30	1.00e-146	512.00
IUUC-Dno-029916	Dasypus novemcinctus	85.40	0.00e+00	861.00
IUUC-Dor-030853	Dipodomys ordii	85.63	0.00e+00	884.00
IUUC-Eca-033204	Equus caballus	84.84	0.00e+00	813.00
IUUC-Fca-036470	Felis catus	86.55	0.00e+00	849.00
IUUC-Fal-037484	Ficedula albicollis	64.79	0.00e+00	660.00
IUUC-Gmo-039252	Gadus morhua	48.62	4.00e-136	478.00
IUUC-Gga-040701	Gallus gallus	65.12	2.00e-172	598.00
IUUC-Gac-041440	Gasterosteus aculeatus	49.80	1.00e-137	483.00
IUUC-Ggo-044509	Gorilla gorilla	82.31	0.00e+00	841.00
IUUC-Hsa-046030	Homo sapiens	84.66	0.00e+00	837.00
IUUC-Itr-048001	Ictidomys tridecemlineatus	86.68	0.00e+00	899.00
IUUC-Lch-050603	Latimeria chalumnae	57.49	5.00e-166	577.00
IUUC-Loc-052914	Lepisosteus oculatus	53.26	4.00e-134	471.00
IUUC-Laf-053957	Loxodonta africana	80.93	0.00e+00	715.00
IUUC-Mcc-054805	Macaca mulatta	85.49	0.00e+00	884.00
IUUC-Meu-056115	Macropus eugenii	78.60	0.00e+00	828.00
IUUC-Mga-059377	Meleagris gallopavo	65.76	0.00e+00	647.00
IUUC-Mmr-061203	Microcebus murinus	87.87	0.00e+00	879.00
IUUC-Mdo-062646	Monodelphis domestica	78.40	0.00e+00	800.00
IUUC-Mmu-063156	Mus musculus	95.53	0.00e+00	948.00
IUUC-Mpu-065923	Mustela putorius furo	81.87	0.00e+00	832.00
IUUC-Mlu-067705	Myotis lucifugus	84.89	0.00e+00	882.00
IUUC-Nle-069635	Nomascus leucogenys	85.59	0.00e+00	807.00
IUUC-Opr-070939	Ochotona princeps	68.72	5.00e-151	527.00
IUUC-Ont-072205	Oreochromis niloticus	47.41	2.00e-128	452.00
IUUC-Oan-073427	Ornithorhynchus anatinus	73.36	0.00e+00	699.00
IUUC-Ocu-074234	Oryctolagus cuniculus	83.43	0.00e+00	844.00
IUUC-Ola-086461	Oryzias latipes	49.60	2.00e-135	476.00
IUUC-Oga-088616	Otolemur garnettii	87.47	0.00e+00	713.00
IUUC-Ptr-090563	Pan troglodytes	84.89	0.00e+00	843.00
IUUC-Pan-092105	Papio anubis	85.88	0.00e+00	862.00
IUUC-Psi-093169	Pelodiscus sinensis	64.71	0.00e+00	677.00
IUUC-Pma-094688	Petromyzon marinus	38.71	4.00e-86	311.00
IUUC-Pfo-096136	Poecilia formosa	49.10	3.00e-121	428.00
IUUC-Pab-098286	Pongo abelii	84.69	0.00e+00	843.00
IUUC-Pca-100577	Procavia capensis	79.13	0.00e+00	770.00
IUUC-Pva-103194	Pteropus vampyrus	86.68	0.00e+00	907.00
IUUC-Sha-107438	Sarcophilus harrisii	80.00	0.00e+00	805.00
IUUC-Ssc-116210	Sus scrofa	84.69	0.00e+00	873.00
IUUC-Tgu-116704	Taeniopygia guttata	64.56	0.00e+00	662.00
IUUC-Tru-117530	Takifugu rubripes	46.71	6.00e-123	434.00
IUUC-Tni-120848	Tetraodon nigroviridis	45.19	3.00e-103	368.00
IUUC-Ttr-128697	Tursiops truncatus	89.51	0.00e+00	729.00
IUUC-Xtr-132843	Xenopus tropicalis	58.85	9.00e-176	609.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence