iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Rno-105276

Ensembl Protein ID

ENSRNOP00000000995.3

UniProt Accession

A0A0G2JSG8; A0A0G2JSG8_RAT

Genbank Protein ID

EDL84635.1

Protein Name

Ubiquitin D

Genbank Nucleotide ID

AABR07044301

Gene Name

Ubd; rCG_58615

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSRNOG00000000768.6	ENSRNOT00000000995.5	ENSRNOP00000000995.3

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
microRNA	TRANSFAC	RAID2
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UDP/UBQ/UBQ_Other	2.50e-23	82.1	93	158

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UDP/UBQ/UBQ_Other

   S: 9    dgs.eltlkvnpsdtVaeLKekiekklgippeqqrLiykGkiLeddktLadyglkdgstihllekk 73
           d   ++ l+v +s++Va++Ke+ie  + +pp +q   + Gk Led+k  ady++k gs ++l+  +
   Q: 93   DEGqRHLLRVRRSSSVAQVKEMIENVTAVPPKKQFVNCNGKRLEDGKIMADYNIKSGSLLFLTAHC 158
           444488889****************************************************98765 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MASCVCVVHS EQWPLMTFDT TMSDKVKKIN EHIRSQTKVS VQDQILLLDS KILKPHRALS 60
SYGIDKENTI HLTLKVVKPS DEELPLSLVE SGDEGQRHLL RVRRSSSVAQ VKEMIENVTA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GATGTTGGCT AGGGCAAACT GCTGGTCAAC GTTGAGCGAT GGCACAAATA ACTCAGTTTG 60
GTTAACCAGG AGTCTGTCGT TTGTCCTTGC ATCCCTGAAG AGCCAAGGAT GACCTCGGTA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR019956--Ubiquitin
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom

PROSITE

PS50053--UBIQUITIN_2

Pfam

PF00240--ubiquitin

PRINTS

PR00348--UBIQUITIN

SMART

SM00213--UBQ

Gene Ontology

GO:0016235--C:aggresome
GO:0005737--C:cytoplasm
GO:0001650--C:fibrillar center
GO:0070842--P:aggresome assembly
GO:0043011--P:myeloid dendritic cell differentiation
GO:0043065--P:positive regulation of apoptotic process
GO:0043123--P:positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0016567--P:protein ubiquitination
GO:0034341--P:response to interferon-gamma
GO:0034612--P:response to tumor necrosis factor
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG

rno:29168

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Bta-013466	Bos taurus	72.84	3.00e-55	207.00
IUUC-Cfa-020280	Canis familiaris	64.58	2.00e-26	110.00
IUUC-Csa-024016	Chlorocebus sabaeus	77.02	4.00e-68	249.00
IUUC-Cho-024450	Choloepus hoffmanni	73.38	8.00e-62	228.00
IUUC-Eca-033912	Equus caballus	77.92	1.00e-67	248.00
IUUC-Ggo-045062	Gorilla gorilla	75.16	9.00e-67	245.00
IUUC-Hsa-045720	Homo sapiens	74.53	7.00e-67	246.00
IUUC-Itr-049029	Ictidomys tridecemlineatus	69.94	2.00e-63	234.00
IUUC-Lch-050628	Latimeria chalumnae	39.49	2.00e-23	102.00
IUUC-Laf-053466	Loxodonta africana	75.97	2.00e-66	244.00
IUUC-Mcc-055415	Macaca mulatta	77.02	3.00e-68	250.00
IUUC-Meu-055938	Macropus eugenii	53.25	4.00e-41	159.00
IUUC-Mmr-061676	Microcebus murinus	74.53	2.00e-68	251.00
IUUC-Mdo-062708	Monodelphis domestica	56.60	3.00e-46	177.00
IUUC-Mmu-063192	Mus musculus	87.04	2.00e-71	261.00
IUUC-Mlu-067281	Myotis lucifugus	75.32	4.00e-66	243.00
IUUC-Nle-069100	Nomascus leucogenys	73.91	8.00e-63	232.00
IUUC-Opr-070538	Ochotona princeps	62.50	7.00e-53	199.00
IUUC-Oan-073112	Ornithorhynchus anatinus	48.41	1.00e-39	155.00
IUUC-Ocu-074871	Oryctolagus cuniculus	68.83	1.00e-58	218.00
IUUC-Oga-088427	Otolemur garnettii	74.07	2.00e-67	248.00
IUUC-Oar-089405	Ovis aries	70.99	1.00e-63	234.00
IUUC-Ptr-090493	Pan troglodytes	72.67	5.00e-64	236.00
IUUC-Pan-091721	Papio anubis	78.26	6.00e-57	212.00
IUUC-Pab-097791	Pongo abelii	74.53	2.00e-65	241.00
IUUC-Pca-100800	Procavia capensis	70.19	3.00e-53	200.00
IUUC-Pva-102510	Pteropus vampyrus	77.78	3.00e-70	257.00
IUUC-Ssc-116367	Sus scrofa	71.60	2.00e-61	228.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence