iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-114035

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

E3 ubiquitin-protein ligase

Genbank Nucleotide ID

CM000761

Gene Name

SORBI_002G404300

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb02g041870	Sb02g041870.1	Sb02g041870.1

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/RING/RING	35.57	3.00e-39	159.00	IUUC-Dme-031700

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Sorghum bicolor

Functional Description
(View)

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.

Protein Sequence
(Fasta)

MASVTYIDDS LAEVIDPPKN EEMLDVTELV GDHIQHSPKP NVASYGNVRE LLECPVCLSA 60
MYPPIHQCSN GHTLCSGCKP RVHNRCPTCR HELGNIRCLA LEKVAASLEL PCKYQNFGCL 120

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Nucleotide Sequence
(Fasta)

ATGGCATCAG TTACTTATAT TGATGATAGC CTTGCTGAGG TTATTGATCC TCCAAAGAAT 60
GAGGAGATGC TGGATGTCAC TGAACTTGTT GGTGATCATA TTCAGCATTC ACCAAAACCA 120

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Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR018121--7-in-absentia-prot_TRAF-dom
IPR004162--SINA-like
IPR008974--TRAF-like
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR013010--Znf_SIAH

PROSITE

PS50089--ZF_RING_2
PS51081--ZF_SIAH

Pfam

PF03145--Sina

Gene Ontology

GO:0005634--C:nucleus
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0007275--P:multicellular organism development
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG

sbi:SORBI_02g041870

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-003118	Amborella trichopoda	84.83	1.00e-150	525.00
IUUC-Aly-006522	Arabidopsis lyrata	81.99	3.00e-132	463.00
IUUC-Ath-007092	Arabidopsis thaliana	82.42	3.00e-132	463.00
IUUC-Bdi-014729	Brachypodium distachyon	80.99	7.00e-132	462.00
IUUC-Bol-015983	Brassica oleracea	78.34	1.00e-132	464.00
IUUC-Bra-016910	Brassica rapa	79.06	2.00e-133	467.00
IUUC-Cel-018320	Caenorhabditis elegans	33.33	2.00e-36	145.00
IUUC-Cin-025674	Ciona intestinalis	35.20	6.00e-42	163.00
IUUC-Csv-026233	Ciona savignyi	35.60	4.00e-42	163.00
IUUC-Dme-031700	Drosophila melanogaster	35.71	5.00e-37	147.00
IUUC-Gma-042926	Glycine max	85.43	1.00e-157	547.00
IUUC-Mtr-058422	Medicago truncatula	82.78	7.00e-153	531.00
IUUC-Mac-065670	Musa acuminata	80.37	6.00e-134	469.00
IUUC-Opr-070341	Ochotona princeps	25.47	6.00e-13	67.00
IUUC-Oan-073701	Ornithorhynchus anatinus	23.27	4.00e-12	63.90
IUUC-Oba-075789	Oryza barthii	94.70	6.00e-176	608.00
IUUC-Obr-076037	Oryza brachyantha	94.70	2.00e-176	610.00
IUUC-Ogl-077148	Oryza glaberrima	94.70	6.00e-176	608.00
IUUC-Ogu-078042	Oryza glumaepatula	94.70	4.00e-176	609.00
IUUC-Oin-079325	Oryza indica	95.03	2.00e-176	610.00
IUUC-Olo-080244	Oryza longistaminata	94.70	1.00e-176	612.00
IUUC-Oni-082163	Oryza nivara	94.70	6.00e-176	608.00
IUUC-Oru-084833	Oryza rufipogon	95.03	2.00e-176	610.00
IUUC-Osa-085316	Oryza sativa	95.03	2.00e-176	610.00
IUUC-Ppa-095212	Physcomitrella patens	83.33	8.00e-136	475.00
IUUC-Pop-100033	Populus trichocarpa	82.76	3.00e-133	466.00
IUUC-Ppe-101960	Prunus persica	81.95	1.00e-133	468.00
IUUC-Pva-103132	Pteropus vampyrus	24.53	2.00e-11	62.00
IUUC-Smo-109412	Selaginella moellendorffii	84.05	1.00e-134	471.00
IUUC-Sit-110245	Setaria italica	98.68	0.00e+00	628.00
IUUC-Sly-111259	Solanum lycopersicum	81.61	4.00e-132	463.00
IUUC-Stu-112474	Solanum tuberosum	83.93	1.00e-154	538.00
IUUC-Tsy-119548	Tarsius syrichta	28.21	8.00e-09	52.80
IUUC-Tca-121228	Theobroma cacao	87.54	1.00e-160	557.00
IUUC-Tur-126049	Triticum urartu	91.39	3.00e-168	583.00
IUUC-Vpa-130799	Vicugna pacos	31.58	2.00e-18	84.30
IUUC-Vvi-131233	Vitis vinifera	79.25	1.00e-128	451.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence