iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bgr-012218

Ensembl Protein ID

CCU76527

UniProt Accession

N1JF45; N1JF45_BLUG1

Genbank Protein ID

CCU76527.1

Protein Name

Ribosome biogenesis protein YTM1

Genbank Nucleotide ID

CAUH01002716

Gene Name

YTM1; BGHDH14_bgh03645

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
BGHDH14_bgh03645	CCU76527	CCU76527

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.70e-28	95.3	358	393

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tl.lvsGsdDgtikvWDlrtg 33
           gHt++v +la  ++ ++ lvsGs+Dgt+++WDlr+ 
   Q: 358  GHTNKVVSLASdPEsNYgLVSGSHDGTCRIWDLRSS 393
           89******99886667789**************986 PP

Organism

Blumeria graminis

Functional Description
(View)

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Protein Sequence
(Fasta)

MEDFFAALRE NLLILVDVQR YGLSQILNSE SMLSTSVPIP FDFLINGSFL RTSLEEYLRS 60
NGLSSETRLN LQYVRSLIPP SYKASFEHDD WVSCVDAIST HSLAGSWGGN NVPIGRELIL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTTTCAGGGA CTCACCAACA GCAAAATGGA AGTCAGTAAC CCCGATACGA AGCATAACCA 60
AGTACAGGTA TATTTCAGTA CGACTTCTGA AGATATCGCA TTGCCTGAAT CTAGGAGAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0000790--C:nuclear chromatin
GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0051276--P:chromosome organization
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	28.02	1.00e-38	152.00
IUUC-Aml-001997	Ailuropoda melanoleuca	28.60	2.00e-34	137.00
IUUC-Atr-002544	Amborella trichopoda	29.92	1.00e-35	142.00
IUUC-Apl-003981	Anas platyrhynchos	28.37	9.00e-37	145.00
IUUC-Aca-004370	Anolis carolinensis	28.37	4.00e-41	160.00
IUUC-Aly-006455	Arabidopsis lyrata	28.09	3.00e-38	150.00
IUUC-Ath-006669	Arabidopsis thaliana	28.80	3.00e-37	147.00
IUUC-Ago-007864	Ashbya gossypii	42.21	4.00e-89	319.00
IUUC-Acl-008177	Aspergillus clavatus	55.73	3.00e-140	489.00
IUUC-Afl-008617	Aspergillus flavus	58.66	2.00e-139	486.00
IUUC-Afu-008752	Aspergillus fumigatus	55.63	4.00e-132	462.00
IUUC-Ani-009136	Aspergillus nidulans	57.71	4.00e-136	476.00
IUUC-Ang-009701	Aspergillus niger	56.83	1.00e-132	464.00
IUUC-Aor-009884	Aspergillus oryzae	58.87	5.00e-140	488.00
IUUC-Ate-010472	Aspergillus terreus	57.53	1.00e-96	344.00
IUUC-Ame-011432	Astyanax mexicanus	29.50	2.00e-40	157.00
IUUC-Bta-012829	Bos taurus	27.67	7.00e-34	135.00
IUUC-Bci-013953	Botrytis cinerea	63.52	2.00e-170	590.00
IUUC-Bdi-014351	Brachypodium distachyon	29.28	2.00e-35	140.00
IUUC-Bol-016190	Brassica oleracea	30.61	5.00e-41	159.00
IUUC-Bra-018095	Brassica rapa	29.80	2.00e-39	154.00
IUUC-Cel-018569	Caenorhabditis elegans	26.18	3.00e-16	77.80
IUUC-Cja-019468	Callithrix jacchus	28.64	1.00e-34	139.00
IUUC-Cfa-020471	Canis familiaris	28.14	8.00e-33	132.00
IUUC-Cpo-022260	Cavia porcellus	28.16	9.00e-33	132.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	32.12	8.00e-40	155.00
IUUC-Csa-023989	Chlorocebus sabaeus	28.64	7.00e-34	135.00
IUUC-Cho-024426	Choloepus hoffmanni	27.53	1.00e-25	108.00
IUUC-Cin-025789	Ciona intestinalis	26.37	3.00e-29	120.00
IUUC-Cgl-026562	Colletotrichum gloeosporioides	61.75	8.00e-48	181.00
IUUC-Cne-027063	Cryptococcus neoformans	25.42	9.00e-25	105.00
IUUC-Dre-027907	Danio rerio	29.92	2.00e-40	157.00
IUUC-Dno-029225	Dasypus novemcinctus	28.40	3.00e-34	137.00
IUUC-Dor-031082	Dipodomys ordii	28.21	6.00e-16	76.60
IUUC-Dse-031308	Dothistroma septosporum	45.07	6.00e-101	358.00
IUUC-Dme-032189	Drosophila melanogaster	26.67	2.00e-30	124.00
IUUC-Ete-032247	Echinops telfairi	26.74	3.00e-29	120.00
IUUC-Eca-034285	Equus caballus	27.91	4.00e-33	133.00
IUUC-Eeu-035322	Erinaceus europaeus	29.96	1.00e-25	108.00
IUUC-Fca-036114	Felis catus	28.84	8.00e-35	139.00
IUUC-Fal-036891	Ficedula albicollis	27.06	1.00e-29	122.00
IUUC-Fox-037965	Fusarium oxysporum	56.26	2.00e-140	490.00
IUUC-Fso-038244	Fusarium solani	57.92	4.00e-137	479.00
IUUC-Gmo-039040	Gadus morhua	28.12	3.00e-41	160.00
IUUC-Ggr-040093	Gaeumannomyces graminis	50.64	2.00e-109	387.00
IUUC-Gga-040610	Gallus gallus	27.88	2.00e-35	140.00
IUUC-Gac-042117	Gasterosteus aculeatus	29.70	4.00e-41	160.00
IUUC-Gma-043425	Glycine max	29.28	3.00e-43	167.00
IUUC-Ggo-045179	Gorilla gorilla	28.64	5.00e-35	139.00
IUUC-Hsa-046114	Homo sapiens	28.64	4.00e-34	137.00
IUUC-Hvu-047331	Hordeum vulgare	28.41	8.00e-32	129.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	27.67	5.00e-33	133.00
IUUC-Kpa-049304	Komagataella pastoris	42.18	1.00e-91	328.00
IUUC-Lch-050655	Latimeria chalumnae	27.81	8.00e-28	115.00
IUUC-Lpe-051675	Leersia perrieri	29.09	1.00e-38	152.00
IUUC-Loc-052868	Lepisosteus oculatus	28.11	3.00e-38	150.00
IUUC-Lma-053258	Leptosphaeria maculans	48.32	1.00e-117	416.00
IUUC-Laf-053993	Loxodonta africana	29.00	6.00e-35	139.00
IUUC-Mcc-055128	Macaca mulatta	28.22	2.00e-22	98.20
IUUC-Meu-056501	Macropus eugenii	30.42	1.00e-33	135.00
IUUC-Mor-057114	Magnaporthe oryzae	55.97	3.00e-141	493.00
IUUC-Mpo-057463	Magnaporthe poae	59.73	1.00e-46	177.00
IUUC-Mtr-058367	Medicago truncatula	28.12	7.00e-37	146.00
IUUC-Mla-059107	Melampsora laricipopulina	28.54	2.00e-41	160.00
IUUC-Mga-059745	Meleagris gallopavo	28.37	2.00e-35	141.00
IUUC-Mvi-060362	Microbotryum violaceum	28.81	2.00e-34	138.00
IUUC-Mdo-062257	Monodelphis domestica	29.29	1.00e-36	145.00
IUUC-Mmu-063546	Mus musculus	27.67	2.00e-34	138.00
IUUC-Mac-065540	Musa acuminata	28.79	9.00e-37	145.00
IUUC-Mpu-066284	Mustela putorius furo	28.14	2.00e-34	138.00
IUUC-Mlu-067241	Myotis lucifugus	27.91	2.00e-34	138.00
IUUC-Nfi-068260	Neosartorya fischeri	56.93	1.00e-136	478.00
IUUC-Ncr-068719	Neurospora crassa	59.04	5.00e-140	489.00
IUUC-Nle-068981	Nomascus leucogenys	28.40	2.00e-34	137.00
IUUC-Opr-071218	Ochotona princeps	28.53	1.00e-31	128.00
IUUC-Ont-071646	Oreochromis niloticus	28.34	1.00e-38	152.00
IUUC-Oan-073453	Ornithorhynchus anatinus	26.96	1.00e-38	152.00
IUUC-Ocu-074008	Oryctolagus cuniculus	27.91	8.00e-35	139.00
IUUC-Oba-075712	Oryza barthii	25.65	8.00e-25	106.00
IUUC-Obr-076721	Oryza brachyantha	28.73	2.00e-39	154.00
IUUC-Ogl-077229	Oryza glaberrima	29.13	3.00e-39	154.00
IUUC-Ogu-078977	Oryza glumaepatula	25.65	2.00e-24	105.00
IUUC-Oin-079683	Oryza indica	29.13	8.00e-39	152.00
IUUC-Olo-080291	Oryza longistaminata	28.57	2.00e-22	97.10
IUUC-Ome-081834	Oryza meridionalis	29.35	2.00e-38	151.00
IUUC-Oni-082507	Oryza nivara	27.83	5.00e-33	133.00
IUUC-Opu-083396	Oryza punctata	28.54	2.00e-37	148.00
IUUC-Oru-085220	Oryza rufipogon	27.89	9.00e-33	132.00
IUUC-Osa-085767	Oryza sativa	29.13	8.00e-39	152.00
IUUC-Ola-087420	Oryzias latipes	28.34	9.00e-44	169.00
IUUC-Olu-087740	Ostreococcus lucimarinus	25.97	5.00e-27	113.00
IUUC-Oga-088264	Otolemur garnettii	27.91	1.00e-33	135.00
IUUC-Oar-089335	Ovis aries	27.67	1.00e-33	135.00
IUUC-Ptr-091320	Pan troglodytes	28.64	4.00e-34	137.00
IUUC-Pan-092833	Papio anubis	28.40	1.00e-33	135.00
IUUC-Psi-093504	Pelodiscus sinensis	28.11	2.00e-34	137.00
IUUC-Pma-094189	Petromyzon marinus	26.81	9.00e-34	135.00
IUUC-Pno-094929	Phaeosphaeria nodorum	51.67	5.00e-123	432.00
IUUC-Ppa-095429	Physcomitrella patens	29.84	1.00e-46	178.00
IUUC-Pfo-096337	Poecilia formosa	27.42	1.00e-42	165.00
IUUC-Pab-097571	Pongo abelii	28.64	5.00e-34	136.00
IUUC-Pop-099977	Populus trichocarpa	27.71	2.00e-37	147.00
IUUC-Pca-100394	Procavia capensis	26.74	1.00e-28	118.00
IUUC-Ppe-101848	Prunus persica	29.25	6.00e-43	166.00
IUUC-Pva-102921	Pteropus vampyrus	28.63	1.00e-16	79.00
IUUC-Pgr-103637	Puccinia graminis	28.84	2.00e-44	171.00
IUUC-Ptt-103781	Puccinia triticina	27.37	2.00e-44	171.00
IUUC-Pte-104135	Pyrenophora teres	48.75	4.00e-112	397.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	47.57	2.00e-108	384.00
IUUC-Rno-105114	Rattus norvegicus	28.14	4.00e-34	137.00
IUUC-Sce-106401	Saccharomyces cerevisiae	41.06	1.00e-88	318.00
IUUC-Sha-107122	Sarcophilus harrisii	29.17	2.00e-34	137.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	35.73	5.00e-75	272.00
IUUC-Spo-108134	Schizosaccharomyces pombe	34.82	8.00e-70	255.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	64.84	1.00e-178	617.00
IUUC-Smo-108761	Selaginella moellendorffii	28.03	1.00e-37	148.00
IUUC-Sit-110354	Setaria italica	29.28	9.00e-40	155.00
IUUC-Sly-111178	Solanum lycopersicum	30.15	1.00e-40	158.00
IUUC-Stu-112169	Solanum tuberosum	28.91	2.00e-40	157.00
IUUC-Sbi-114193	Sorghum bicolor	30.85	6.00e-41	159.00
IUUC-Sre-115002	Sporisorium reilianum	31.22	1.00e-24	105.00
IUUC-Ssc-116066	Sus scrofa	27.91	5.00e-34	136.00
IUUC-Tgu-117048	Taeniopygia guttata	28.37	5.00e-37	146.00
IUUC-Tni-119820	Tetraodon nigroviridis	28.57	3.00e-39	154.00
IUUC-Tca-121605	Theobroma cacao	29.84	1.00e-41	162.00
IUUC-Tre-121947	Trichoderma reesei	56.32	2.00e-139	486.00
IUUC-Tvi-122481	Trichoderma virens	56.32	4.00e-139	486.00
IUUC-Tae-123504	Triticum aestivum	28.02	2.00e-38	151.00
IUUC-Tur-126586	Triticum urartu	28.19	7.00e-37	145.00
IUUC-Tme-126900	Tuber melanosporum	45.95	3.00e-99	353.00
IUUC-Uma-129628	Ustilago maydis	25.58	4.00e-18	84.00
IUUC-Vpa-130260	Vicugna pacos	27.67	3.00e-34	137.00
IUUC-Vvi-131009	Vitis vinifera	31.37	1.00e-42	165.00
IUUC-Xtr-132083	Xenopus tropicalis	28.54	2.00e-38	150.00
IUUC-Xma-133094	Xiphophorus maculatus	27.88	9.00e-43	165.00
IUUC-Yli-134531	Yarrowia lipolytica	36.50	5.00e-68	249.00
IUUC-Zma-135509	Zea mays	30.95	2.00e-40	157.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence