iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sly-111840

Ensembl Protein ID

Solyc06g074740.2.1

UniProt Accession

P93231; VPS41_SOLLC

Genbank Protein ID

AAB60857.1

Protein Name

Vacuolar protein sorting-associated protein 41 homolog

Genbank Nucleotide ID

U86662

Gene Name

VPS41

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Solyc06g074740.2	Solyc06g074740.2.1	Solyc06g074740.2.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	8.00e-06	26.8	91	118

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikv 27
           Ht+ v++l+f +d  ++ s+sdDg++ +
   Q: 91   HTAAVNDLCFdTDgEYVGSCSDDGSVVI 118
           9**********889***********986 PP

Organism

Solanum lycopersicum

Functional Description
(View)

Required for vacuolar assembly and vacuolar traffic.

Protein Sequence
(Fasta)

MSPKPSENGI DGDDERDEEE EDSEEEEAEE EEEDEPRLKY QRMGASVPSL LSADAATCIA 60
VAERMIALGT HGGAVHILDF LGNQVKEFAA HTAAVNDLCF DTDGEYVGSC SDDGSVVINS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCACCAAAAA AAAGTTTCTT CTTCTTTTTC AAAGAAGCTC AATTTCCATT TTCCACACAG 60
ATCTTAAATA ATCTCTCTCT CAATCATTCT TCTACGGCGG TAAATAGTGT TCGGCATGTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0677--Repeat
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR000547--Clathrin_H-chain/VPS_repeat
IPR011990--TPR-like_helical_dom
IPR016902--VPS41
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50236--CHCR

Pfam

PF00637--Clathrin

SMART

SM00299--CLH
SM00320--WD40

Gene Ontology

GO:0033263--C:CORVET complex
GO:0030897--C:HOPS complex
GO:0005770--C:late endosome
GO:0051020--F:GTPase binding
GO:0006623--P:protein targeting to vacuole
GO:0035542--P:regulation of SNARE complex assembly
GO:0042144--P:vacuole fusion, non-autophagic
GO:0016192--P:vesicle-mediated transport

KEGG

sly:544040

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000207	Aegilops tauschii	65.70	0.00e+00	1226.00
IUUC-Atr-002975	Amborella trichopoda	73.41	0.00e+00	1378.00
IUUC-Aca-005067	Anolis carolinensis	35.43	1.00e-154	539.00
IUUC-Aly-005839	Arabidopsis lyrata	74.26	0.00e+00	1437.00
IUUC-Ath-006625	Arabidopsis thaliana	74.07	0.00e+00	1442.00
IUUC-Ago-007960	Ashbya gossypii	24.29	2.00e-71	263.00
IUUC-Acl-008174	Aspergillus clavatus	24.59	2.00e-44	174.00
IUUC-Ani-009250	Aspergillus nidulans	24.11	9.00e-40	158.00
IUUC-Ang-009665	Aspergillus niger	24.10	4.00e-58	219.00
IUUC-Aor-010230	Aspergillus oryzae	25.08	1.00e-44	174.00
IUUC-Ate-010464	Aspergillus terreus	23.38	4.00e-37	150.00
IUUC-Ame-011311	Astyanax mexicanus	34.14	3.00e-126	445.00
IUUC-Bgr-012099	Blumeria graminis	25.08	1.00e-50	194.00
IUUC-Bci-013660	Botrytis cinerea	24.95	4.00e-61	229.00
IUUC-Bdi-014641	Brachypodium distachyon	66.59	0.00e+00	1271.00
IUUC-Bol-015685	Brassica oleracea	76.05	0.00e+00	1467.00
IUUC-Bra-016918	Brassica rapa	75.19	0.00e+00	1457.00
IUUC-Cin-025239	Ciona intestinalis	36.79	3.00e-153	535.00
IUUC-Cgl-026706	Colletotrichum gloeosporioides	25.91	2.00e-46	181.00
IUUC-Cne-026799	Cryptococcus neoformans	36.21	1.00e-172	599.00
IUUC-Cme-027200	Cyanidioschyzon merolae	27.98	1.00e-11	65.10
IUUC-Dre-028115	Danio rerio	36.58	1.00e-156	546.00
IUUC-Dse-031544	Dothistroma septosporum	25.15	5.00e-47	182.00
IUUC-Dme-031830	Drosophila melanogaster	31.12	3.00e-100	359.00
IUUC-Ete-033051	Echinops telfairi	43.75	3.00e-43	169.00
IUUC-Fca-035809	Felis catus	35.71	3.00e-157	548.00
IUUC-Fox-037949	Fusarium oxysporum	25.04	2.00e-47	184.00
IUUC-Fso-038282	Fusarium solani	24.84	6.00e-45	176.00
IUUC-Gmo-038540	Gadus morhua	36.89	4.00e-152	531.00
IUUC-Ggr-039733	Gaeumannomyces graminis	25.79	2.00e-51	197.00
IUUC-Gac-041462	Gasterosteus aculeatus	36.15	1.00e-151	529.00
IUUC-Gma-043148	Glycine max	80.09	0.00e+00	1552.00
IUUC-Hvu-047693	Hordeum vulgare	67.31	0.00e+00	1285.00
IUUC-Kpa-049224	Komagataella pastoris	25.30	2.00e-69	257.00
IUUC-Lch-049444	Latimeria chalumnae	37.72	8.00e-155	540.00
IUUC-Lpe-050942	Leersia perrieri	63.93	0.00e+00	1174.00
IUUC-Loc-052260	Lepisosteus oculatus	36.23	9.00e-156	543.00
IUUC-Lma-053173	Leptosphaeria maculans	23.78	2.00e-41	164.00
IUUC-Meu-056483	Macropus eugenii	35.50	3.00e-46	179.00
IUUC-Mor-056979	Magnaporthe oryzae	24.42	3.00e-49	190.00
IUUC-Mpo-057312	Magnaporthe poae	24.70	3.00e-48	186.00
IUUC-Mvi-060386	Microbotryum violaceum	38.71	7.00e-166	577.00
IUUC-Mac-064975	Musa acuminata	77.29	0.00e+00	1402.00
IUUC-Ncr-068840	Neurospora crassa	25.31	1.00e-48	188.00
IUUC-Opr-070385	Ochotona princeps	32.42	2.00e-124	439.00
IUUC-Ont-072367	Oreochromis niloticus	36.33	1.00e-149	523.00
IUUC-Oan-073085	Ornithorhynchus anatinus	34.90	7.00e-148	517.00
IUUC-Oba-075574	Oryza barthii	69.15	0.00e+00	1321.00
IUUC-Obr-076203	Oryza brachyantha	67.93	0.00e+00	1277.00
IUUC-Ogl-077909	Oryza glaberrima	69.15	0.00e+00	1321.00
IUUC-Ogu-078053	Oryza glumaepatula	68.41	0.00e+00	1314.00
IUUC-Oin-079700	Oryza indica	68.93	0.00e+00	1316.00
IUUC-Olo-080707	Oryza longistaminata	65.88	0.00e+00	1269.00
IUUC-Oni-082754	Oryza nivara	68.90	0.00e+00	1315.00
IUUC-Opu-083854	Oryza punctata	69.55	0.00e+00	1309.00
IUUC-Oru-085071	Oryza rufipogon	68.41	0.00e+00	1313.00
IUUC-Osa-085370	Oryza sativa	69.15	0.00e+00	1321.00
IUUC-Ola-086362	Oryzias latipes	35.91	9.00e-154	536.00
IUUC-Pan-092816	Papio anubis	34.48	2.00e-102	365.00
IUUC-Pma-094654	Petromyzon marinus	37.53	7.00e-168	583.00
IUUC-Pno-095071	Phaeosphaeria nodorum	25.44	7.00e-49	189.00
IUUC-Ppa-095198	Physcomitrella patens	56.10	0.00e+00	1019.00
IUUC-Pfo-097465	Poecilia formosa	35.34	2.00e-155	542.00
IUUC-Pop-100066	Populus trichocarpa	80.43	0.00e+00	1556.00
IUUC-Pca-100990	Procavia capensis	33.96	1.00e-131	463.00
IUUC-Ppe-101500	Prunus persica	79.59	0.00e+00	1551.00
IUUC-Pgr-103404	Puccinia graminis	32.46	1.00e-147	516.00
IUUC-Ptt-103952	Puccinia triticina	31.74	2.00e-141	496.00
IUUC-Pte-104216	Pyrenophora teres	25.36	3.00e-46	180.00
IUUC-Sce-106462	Saccharomyces cerevisiae	22.88	2.00e-57	217.00
IUUC-Sja-107696	Schizosaccharomyces japonicus	28.02	1.00e-88	320.00
IUUC-Spo-108173	Schizosaccharomyces pombe	31.55	2.00e-118	419.00
IUUC-Smo-109505	Selaginella moellendorffii	56.55	0.00e+00	966.00
IUUC-Sit-110176	Setaria italica	68.07	0.00e+00	1325.00
IUUC-Sar-113073	Sorex araneus	32.08	3.00e-120	425.00
IUUC-Sbi-114139	Sorghum bicolor	68.61	0.00e+00	1308.00
IUUC-Sre-115158	Sporisorium reilianum	36.75	3.00e-151	529.00
IUUC-Tru-118468	Takifugu rubripes	34.34	1.00e-150	526.00
IUUC-Tni-120478	Tetraodon nigroviridis	33.82	6.00e-152	530.00
IUUC-Tca-121780	Theobroma cacao	80.73	0.00e+00	1598.00
IUUC-Tre-121900	Trichoderma reesei	24.11	4.00e-44	172.00
IUUC-Tvi-122343	Trichoderma virens	24.47	1.00e-43	171.00
IUUC-Tae-122785	Triticum aestivum	67.35	0.00e+00	1300.00
IUUC-Tur-126430	Triticum urartu	67.65	0.00e+00	1258.00
IUUC-Tme-127007	Tuber melanosporum	26.03	2.00e-45	177.00
IUUC-Uma-129356	Ustilago maydis	34.62	1.00e-150	526.00
IUUC-Vda-129676	Verticillium dahliae	25.12	1.00e-47	184.00
IUUC-Vvi-131744	Vitis vinifera	82.48	0.00e+00	1602.00
IUUC-Xtr-132093	Xenopus tropicalis	35.01	5.00e-151	527.00
IUUC-Xma-133199	Xiphophorus maculatus	35.57	7.00e-153	533.00
IUUC-Yli-134385	Yarrowia lipolytica	28.47	1.00e-78	287.00
IUUC-Zma-135567	Zea mays	67.38	0.00e+00	1287.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence