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Basic Information Integrated Annotations

Tag Content
UUCD2 ID IUUC-Rno-106045
UUCD1 version UUC-RaN-00947
Ensembl Protein ID ENSRNOP00000012301.2
UniProt Accession Q923V4; Q6P512; FBX6_RAT
Genbank Protein ID AAK70899.1; AAH63148.1
Protein Name F-box only protein 6; F-box only protein 6b; F-box protein that recognizes sugar chains 2; F-box/G-domain protein 2
Genbank Nucleotide ID AF393484; BC063148
Gene Name Fbxo6; Fbg2; Fbs2; Fbxo6b
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000009217.4 ENSRNOT00000012301.4 ENSRNOP00000012301.2
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
microRNATRANSFACRAID2
Protein-protein Interaction
IID
Post-translational Modifications (PTMs)
CPLMdbPAFPhosphositePlusUniProt
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
E3 adaptor/Cullin RING/SCF/F-box 25.09 4.00e-13 72.00 IUUC-Cel-018409
E3 adaptor/Cullin RING/SCF/F-box 77.20 1.00e-115 413.00 IUUC-Hsa-046047
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Rattus norvegicus
Functional Description
(View)

Functional Description



     Substrate-recognition component of some SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complexes. Involved in endoplasmic reticulum-associated degradation pathway (ERAD) for misfolded lumenal proteins by recognizing and binding sugar chains on unfolded glycoproteins that are retrotranlocated into the cytosol and promoting their ubiquitination and subsequent degradation. Able to recognize and bind denatured glycoproteins, which are modified with not only high-mannose but also complex-type oligosaccharides. Also recognizes sulfated glycans. Also involved in DNA damage response by specifically recognizing activated CHEK1 (phosphorylated on 'Ser-345'), promoting its ubiquitination and degradation. Ubiquitination of CHEK1 is required to insure that activated CHEK1 does not accumulate as cells progress through S phase, or when replication forks encounter transient impediments during normal DNA replication (By similarity).
Substrate-recognition component of some SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complexes. Involved in endoplasmic reticulum-associated degradation pathway (ERAD) for misfolded lumenal proteins by recognizing and binding sugar chains on unfolded glycoproteins that are retrotranlocated into the cytosol and promoting their ubiquitination and subsequent degradation. Able to recognize and bind denatured glycoproteins, which are modified with not only high-mannose but also complex-type oligosaccharides. Also recognizes sulfated glycans. Also involved in DNA damage response by specifically recognizing activated CHEK1 (phosphorylated on 'Ser-345'), promoting its ubiquitination and degradation. Ubiquitination of CHEK1 is required to insure that activated CHEK1 does not accumulate as cells progress through S phase, or when replication forks encounter transient impediments during normal DNA replication (By similarity).
Protein Sequence
(Fasta)
MVNINELPEN ILLELFTHVP APQLLRNCRL VCSLWRDLID VMTLWKRKSL REGFVTKDRD 60
EPVDDWKIFY ILCSLQRNLL RNPCAEENLR SWRIDSNGGD EWKVESLPGD HGTSFPDTKV 120
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Protein Fasta Sequence



>IUUC-Rno-106045|E3,F-box|Rattus norvegicus
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Nucleotide Sequence
(Fasta)
CCTGGAACAT AGCTCCACTG CCATCATGGT CAACATCAAC GAGCTGCCGG AGAACATTCT 60
ACTGGAACTG TTCACCCACG TCCCGGCCCC ACAGCTGCTG CGCAACTGCC GCCTGGTCTG 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Rno-106045|E3,F-box|Rattus norvegicus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0227--DNA damage
KW-0234--DNA repair
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0833--Ubl conjugation pathway
KW-0834--Unfolded protein response

Interpro

IPR007397--F-box-assoc_dom
IPR001810--F-box_dom
IPR008979--Galactose-bd-like

PROSITE

PS51114--FBA
PS50181--FBOX

Pfam

PF12937--F-box-like
PF04300--FBA

SMART

SM01198--FBA
SM00256--FBOX

Gene Ontology

GO:0005737--C:cytoplasm
GO:0044322--C:endoplasmic reticulum quality control compartment
GO:0019005--C:SCF ubiquitin ligase complex
GO:0030246--F:carbohydrate binding
GO:0001948--F:glycoprotein binding
GO:0061630--F:ubiquitin protein ligase activity
GO:0006281--P:DNA repair
GO:0006516--P:glycoprotein catabolic process
GO:0006986--P:response to unfolded protein
GO:0031146--P:SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0030433--P:ubiquitin-dependent ERAD pathway

KEGG rno:192351
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-002387 Ailuropoda melanoleuca 75.50 3.00e-117 414.00
IUUC-Apl-003256 Anas platyrhynchos 59.60 5.00e-91 327.00
IUUC-Afl-008397 Aspergillus flavus 28.71 2.00e-03 35.80
IUUC-Aor-010183 Aspergillus oryzae 28.71 2.00e-03 35.80
IUUC-Ame-011181 Astyanax mexicanus 45.87 8.00e-61 226.00
IUUC-Bta-012446 Bos taurus 78.71 9.00e-130 455.00
IUUC-Cel-018409 Caenorhabditis elegans 24.07 1.00e-14 73.90
IUUC-Cja-019690 Callithrix jacchus 71.98 1.00e-111 395.00
IUUC-Cfa-020399 Canis familiaris 76.75 7.00e-128 449.00
IUUC-Cpo-022113 Cavia porcellus 74.72 4.00e-123 433.00
IUUC-Csa-023732 Chlorocebus sabaeus 76.40 1.00e-116 412.00
IUUC-Dre-027973 Danio rerio 45.64 8.00e-65 239.00
IUUC-Dno-029725 Dasypus novemcinctus 77.87 2.00e-115 408.00
IUUC-Dor-030820 Dipodomys ordii 83.05 2.00e-119 421.00
IUUC-Ete-032617 Echinops telfairi 80.34 7.00e-87 312.00
IUUC-Eca-033658 Equus caballus 77.51 3.00e-117 414.00
IUUC-Eeu-035144 Erinaceus europaeus 73.79 6.00e-113 400.00
IUUC-Fca-036511 Felis catus 80.92 3.00e-130 457.00
IUUC-Fal-037154 Ficedula albicollis 62.56 8.00e-89 319.00
IUUC-Gga-041011 Gallus gallus 60.63 2.00e-90 325.00
IUUC-Gac-041813 Gasterosteus aculeatus 47.74 1.00e-63 236.00
IUUC-Ggo-044771 Gorilla gorilla 77.20 4.00e-118 417.00
IUUC-Hsa-046047 Homo sapiens 77.20 3.00e-117 414.00
IUUC-Itr-048961 Ictidomys tridecemlineatus 85.66 2.00e-126 444.00
IUUC-Loc-051984 Lepisosteus oculatus 50.43 6.00e-60 223.00
IUUC-Laf-054388 Loxodonta africana 79.62 1.00e-121 428.00
IUUC-Mcc-055219 Macaca mulatta 77.42 4.00e-117 414.00
IUUC-Meu-056508 Macropus eugenii 71.14 1.00e-106 378.00
IUUC-Mga-060039 Meleagris gallopavo 63.11 2.00e-87 315.00
IUUC-Mmr-060599 Microcebus murinus 77.69 6.00e-122 430.00
IUUC-Mdo-061904 Monodelphis domestica 66.28 3.00e-106 377.00
IUUC-Mmu-064158 Mus musculus 85.99 4.00e-134 470.00
IUUC-Mpu-065798 Mustela putorius furo 79.46 2.00e-125 441.00
IUUC-Mlu-067931 Myotis lucifugus 77.27 2.00e-126 444.00
IUUC-Opr-070619 Ochotona princeps 80.33 7.00e-118 416.00
IUUC-Ont-072665 Oreochromis niloticus 49.17 5.00e-70 257.00
IUUC-Ocu-074270 Oryctolagus cuniculus 77.19 4.00e-121 427.00
IUUC-Oru-084779 Oryza rufipogon 37.50 4.70e+00 26.90
IUUC-Ola-086867 Oryzias latipes 46.09 2.00e-65 242.00
IUUC-Oga-088988 Otolemur garnettii 80.39 6.00e-126 443.00
IUUC-Oar-089871 Ovis aries 80.08 1.00e-129 455.00
IUUC-Ptr-091362 Pan troglodytes 76.40 2.00e-116 411.00
IUUC-Pan-091935 Papio anubis 77.02 2.00e-116 411.00
IUUC-Psi-092980 Pelodiscus sinensis 63.64 5.00e-92 330.00
IUUC-Pfo-097249 Poecilia formosa 45.00 3.00e-57 215.00
IUUC-Pab-098167 Pongo abelii 77.20 4.00e-117 414.00
IUUC-Pca-100483 Procavia capensis 73.60 2.00e-84 305.00
IUUC-Pva-103073 Pteropus vampyrus 76.89 2.00e-124 438.00
IUUC-Sar-113378 Sorex araneus 77.78 7.00e-117 412.00
IUUC-Sbi-114018 Sorghum bicolor 27.85 4.20e-02 32.70
IUUC-Ssc-115889 Sus scrofa 79.47 8.00e-129 452.00
IUUC-Tgu-116573 Taeniopygia guttata 61.78 1.00e-84 305.00
IUUC-Tru-117734 Takifugu rubripes 47.93 3.00e-62 231.00
IUUC-Tni-120432 Tetraodon nigroviridis 44.90 3.00e-63 234.00
IUUC-Tbe-127475 Tupaia belangeri 78.91 5.00e-132 463.00
IUUC-Ttr-129048 Tursiops truncatus 77.78 4.00e-123 434.00
IUUC-Xtr-132515 Xenopus tropicalis 53.33 5.00e-64 236.00
Created Date 25-Jun-2017

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