iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sha-107238

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

AEFK01221757

Gene Name

RAG1

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSSHAG00000014085.1	ENSSHAT00000016698.1	ENSSHAP00000016559.1

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/RING/RING	81.85	0.00e+00	1799.00	IUUC-Hsa-045964
E3 activity/RING/RING	79.75	0.00e+00	1758.00	IUUC-Mmu-064297

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Sarcophilus harrisii

Protein Sequence
(Fasta)

MEIAVAPGRG LSSAPDEIQH PYMKFSEWKF KLFKVRSFIK PPPEEAQGPN KNLGEGQASL 60
EETPAVISSA NIPAPEKPAL IQPTFSALPK SLEKPADVGK TREKAIHLAS LRQLCRICGV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGAAATAG CAGTGGCACC AGGTCGAGGG CTTAGCTCTG CCCCAGATGA AATCCAGCAC 60
CCGTATATGA AATTTTCTGA ATGGAAATTC AAGCTCTTCA AAGTGAGATC CTTTATTAAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0233--DNA recombination
KW-0238--DNA-binding
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR024627--RAG1
IPR019485--RAG1_Znf
IPR023336--RAG_nonamer-bd_dom
IPR013087--Znf_C2H2_type
IPR018957--Znf_C3HC4_RING-type
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS51487--NBD
PS51765--ZF_RAG1
PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF12940--RAG1
PF00097--zf-C3HC4
PF10426--zf-RAG1

SMART

SM00184--RING

Gene Ontology

GO:0005634--C:nucleus
GO:0004519--F:endonuclease activity
GO:0043565--F:sequence-specific DNA binding
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0002250--P:adaptive immune response
GO:0010390--P:histone monoubiquitination
GO:0043154--P:negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0070244--P:negative regulation of thymocyte apoptotic process
GO:0045582--P:positive regulation of T cell differentiation
GO:0002331--P:pre-B cell allelic exclusion
GO:0051865--P:protein autoubiquitination
GO:0033077--P:T cell differentiation in thymus
GO:0043029--P:T cell homeostasis
GO:0048538--P:thymus development
GO:0033151--P:V(D)J recombination

KEGG

shr:100922588

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001206	Ailuropoda melanoleuca	81.76	0.00e+00	1760.00
IUUC-Apl-003271	Anas platyrhynchos	75.88	0.00e+00	1645.00
IUUC-Aca-004400	Anolis carolinensis	72.36	0.00e+00	1592.00
IUUC-Ame-011295	Astyanax mexicanus	58.37	0.00e+00	1222.00
IUUC-Bta-012421	Bos taurus	81.25	0.00e+00	1747.00
IUUC-Cja-019891	Callithrix jacchus	81.18	0.00e+00	1722.00
IUUC-Cfa-020740	Canis familiaris	77.27	0.00e+00	1692.00
IUUC-Cpo-021800	Cavia porcellus	80.15	0.00e+00	1675.00
IUUC-Csa-024203	Chlorocebus sabaeus	80.34	0.00e+00	1538.00
IUUC-Dre-028416	Danio rerio	58.29	0.00e+00	1207.00
IUUC-Dno-029101	Dasypus novemcinctus	81.10	0.00e+00	1730.00
IUUC-Eca-033385	Equus caballus	81.76	0.00e+00	1760.00
IUUC-Fca-036545	Felis catus	81.90	0.00e+00	1761.00
IUUC-Fal-037208	Ficedula albicollis	74.61	0.00e+00	1627.00
IUUC-Gmo-039622	Gadus morhua	54.89	0.00e+00	1192.00
IUUC-Gga-041182	Gallus gallus	74.78	0.00e+00	1601.00
IUUC-Gac-041682	Gasterosteus aculeatus	56.84	0.00e+00	1205.00
IUUC-Ggo-044510	Gorilla gorilla	81.85	0.00e+00	1748.00
IUUC-Hsa-045964	Homo sapiens	81.85	0.00e+00	1748.00
IUUC-Itr-048862	Ictidomys tridecemlineatus	80.61	0.00e+00	1733.00
IUUC-Lch-050041	Latimeria chalumnae	68.68	0.00e+00	1464.00
IUUC-Loc-052464	Lepisosteus oculatus	62.26	0.00e+00	1345.00
IUUC-Laf-053544	Loxodonta africana	81.66	0.00e+00	1763.00
IUUC-Mcc-054867	Macaca mulatta	81.76	0.00e+00	1751.00
IUUC-Meu-055986	Macropus eugenii	90.49	0.00e+00	1784.00
IUUC-Mga-059262	Meleagris gallopavo	74.88	0.00e+00	1610.00
IUUC-Mdo-062686	Monodelphis domestica	89.97	0.00e+00	1979.00
IUUC-Mmu-064297	Mus musculus	79.75	0.00e+00	1749.00
IUUC-Mpu-066027	Mustela putorius furo	80.80	0.00e+00	1734.00
IUUC-Mlu-067885	Myotis lucifugus	81.66	0.00e+00	1766.00
IUUC-Nle-070073	Nomascus leucogenys	81.47	0.00e+00	1744.00
IUUC-Ont-071400	Oreochromis niloticus	59.54	0.00e+00	1257.00
IUUC-Oan-072920	Ornithorhynchus anatinus	94.42	0.00e+00	788.00
IUUC-Ocu-074616	Oryctolagus cuniculus	81.57	0.00e+00	1740.00
IUUC-Ola-086828	Oryzias latipes	58.95	0.00e+00	1236.00
IUUC-Oga-088675	Otolemur garnettii	90.41	3.00e-148	516.00
IUUC-Oar-090380	Ovis aries	80.80	0.00e+00	1759.00
IUUC-Ptr-090648	Pan troglodytes	81.95	0.00e+00	1753.00
IUUC-Pan-092036	Papio anubis	81.76	0.00e+00	1748.00
IUUC-Psi-093130	Pelodiscus sinensis	78.56	0.00e+00	1724.00
IUUC-Pfo-097273	Poecilia formosa	60.06	0.00e+00	1220.00
IUUC-Pca-100134	Procavia capensis	77.39	0.00e+00	1659.00
IUUC-Rno-105632	Rattus norvegicus	80.04	0.00e+00	1749.00
IUUC-Sar-113591	Sorex araneus	72.31	0.00e+00	1525.00
IUUC-Ssc-115720	Sus scrofa	80.04	0.00e+00	1721.00
IUUC-Tgu-117030	Taeniopygia guttata	75.02	0.00e+00	1621.00
IUUC-Tru-117669	Takifugu rubripes	55.69	0.00e+00	1142.00
IUUC-Tsy-119578	Tarsius syrichta	77.65	0.00e+00	1676.00
IUUC-Tni-120073	Tetraodon nigroviridis	57.50	0.00e+00	1186.00
IUUC-Tbe-128029	Tupaia belangeri	70.18	0.00e+00	817.00
IUUC-Ttr-128677	Tursiops truncatus	88.92	0.00e+00	768.00
IUUC-Vpa-130346	Vicugna pacos	90.95	0.00e+00	846.00
IUUC-Xtr-132442	Xenopus tropicalis	85.57	4.00e-99	353.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence