iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
iRefIndex	PINA	HINT	Mentha
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.30e-28	97.9	209	241

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf......sdtllvsGsdDgtikvW 28
           Htd+v+++a+      +  +++sGs Dg++ +W
   Q: 209  HTDWVRDVAWapnlglPKSTIASGSEDGKVIIW 241
           ***********666654445************* PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Required for protein transport from the endoplasmic reticulum to the Golgi apparatus.

Protein Sequence
(Fasta)

MPPQKIETGH SDTIHDVVMD YYGKRVATAS SDCTIKITGV SNSGGSQHLA TLTGHRGPVW 60
QVAWAHPKFG SLLASCSYDG QIILWKEGNQ NQWTQAHVFT DHKVSVNSIA WAPHELGLSL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TCTCTCTCGT CTCTAAGCAG TAGCAGATCT GAGTTTTGGA GAGTTCAAAG GAAGAAGATA 60
ACTCCAATAC CAGAGGTTCG TAACGATGTG AGATTTTTCT CTGTTGTTTA TGAAGTCTTA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0256--Endoplasmic reticulum
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0677--Repeat
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005829--C:cytosol
GO:0005783--C:endoplasmic reticulum
GO:0005794--C:Golgi apparatus
GO:0015031--P:protein transport
GO:0016192--P:vesicle-mediated transport

KEGG

ath:AT3G01340

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ago-007827	Ashbya gossypii	47.16	1.00e-70	258.00
IUUC-Bol-015572	Brassica oleracea	93.05	6.00e-167	578.00
IUUC-Bra-017286	Brassica rapa	92.72	2.00e-166	577.00
IUUC-Cre-022797	Chlamydomonas reinhardtii	54.30	2.00e-92	331.00
IUUC-Cme-027165	Cyanidioschyzon merolae	36.89	2.00e-49	189.00
IUUC-Eeu-035119	Erinaceus europaeus	37.08	3.00e-14	72.00
IUUC-Lma-053250	Leptosphaeria maculans	49.33	1.00e-69	255.00
IUUC-Olu-087893	Ostreococcus lucimarinus	52.90	1.00e-77	282.00
IUUC-Pan-092013	Papio anubis	31.08	6.00e-28	116.00
IUUC-Pno-094955	Phaeosphaeria nodorum	50.51	4.00e-69	253.00
IUUC-Pte-104267	Pyrenophora teres	50.00	2.00e-70	258.00
IUUC-Pyt-104535	Pyrenophora triticirepentis	47.78	3.00e-64	237.00
IUUC-Sce-106437	Saccharomyces cerevisiae	49.32	1.00e-67	248.00
IUUC-Sja-107654	Schizosaccharomyces japonicus	47.18	2.00e-71	261.00
IUUC-Spo-108362	Schizosaccharomyces pombe	49.13	3.00e-71	261.00
IUUC-Sar-113279	Sorex araneus	27.97	3.00e-23	102.00
IUUC-Tsy-118913	Tarsius syrichta	27.78	4.00e-22	98.20

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence