iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ata-000532

Ensembl Protein ID

EMT17040

UniProt Accession

N1QZI6; N1QZI6_AEGTA

Genbank Protein ID

EMT17040.1

Protein Name

Ribosome biogenesis protein WDR12 homolog

Genbank Nucleotide ID

KD535804

Gene Name

F775_31318

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
F775_31318	EMT17040	EMT17040

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.40e-34	116.6	272	307

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclafsd.tllvsGsdDgtikvWDlrtgvl 35
           gHt  v+++a+++ +++ s+s+D++++ WD  tg+ 
   Q: 272  GHTQCVSSVAWPEqRTIYSASWDHSVRQWDAQTGRE 307
           8**********88899**************999875 PP

Organism

Aegilops tauschii

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MDADASRQVR VRFVTKLPPP LRAPPTAIAV PAELSRMGLS EIVNSLLLSA EPDHQAQPFD 60
FIVDGELVRM PLHQFLLAKG ISAERVLELE YIKAVAPRKQ EPPLPHDDWV SAVDGSNPSF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGACGCCG ACGCGTCGCG CCAGGTGCGC GTGCGCTTCG TCACGAAGCT GCCGCCTCCG 60
CTCCGCGCGC CGCCCACCGC CATCGCGGTC CCCGCCGAGC TCTCCCGCAT GGGCCTCTCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0539--Nucleus
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0009506--C:plasmodesma
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

ats:F775_31318

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001997	Ailuropoda melanoleuca	34.16	1.00e-55	209.00
IUUC-Atr-002544	Amborella trichopoda	61.06	2.00e-156	545.00
IUUC-Apl-003981	Anas platyrhynchos	34.57	7.00e-58	216.00
IUUC-Aca-004370	Anolis carolinensis	32.62	2.00e-63	235.00
IUUC-Aly-006455	Arabidopsis lyrata	63.28	4.00e-171	593.00
IUUC-Ath-006669	Arabidopsis thaliana	62.82	1.00e-165	575.00
IUUC-Ago-007864	Ashbya gossypii	30.32	2.00e-46	179.00
IUUC-Acl-008177	Aspergillus clavatus	29.96	3.00e-43	169.00
IUUC-Afl-008617	Aspergillus flavus	31.37	5.00e-39	154.00
IUUC-Afu-008752	Aspergillus fumigatus	30.71	7.00e-39	154.00
IUUC-Ani-009136	Aspergillus nidulans	30.89	1.00e-41	163.00
IUUC-Ang-009701	Aspergillus niger	30.69	7.00e-38	150.00
IUUC-Aor-009884	Aspergillus oryzae	31.13	3.00e-39	155.00
IUUC-Ame-011432	Astyanax mexicanus	33.25	1.00e-65	242.00
IUUC-Bgr-012218	Blumeria graminis	27.80	7.00e-38	150.00
IUUC-Bta-012829	Bos taurus	32.54	5.00e-56	211.00
IUUC-Bci-013953	Botrytis cinerea	28.40	4.00e-38	151.00
IUUC-Bdi-014351	Brachypodium distachyon	91.20	0.00e+00	785.00
IUUC-Bol-016514	Brassica oleracea	64.67	2.00e-161	560.00
IUUC-Bra-016988	Brassica rapa	64.90	4.00e-162	563.00
IUUC-Cel-018569	Caenorhabditis elegans	24.07	5.00e-24	104.00
IUUC-Cja-019468	Callithrix jacchus	33.25	6.00e-54	204.00
IUUC-Cfa-020471	Canis familiaris	32.14	9.00e-54	203.00
IUUC-Cpo-022260	Cavia porcellus	34.20	1.00e-55	209.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	37.97	4.00e-64	237.00
IUUC-Csa-023989	Chlorocebus sabaeus	33.02	5.00e-54	204.00
IUUC-Cho-024426	Choloepus hoffmanni	31.46	5.00e-40	157.00
IUUC-Cin-025789	Ciona intestinalis	31.30	6.00e-52	197.00
IUUC-Cgl-026562	Colletotrichum gloeosporioides	31.11	9.00e-07	45.80
IUUC-Cne-027063	Cryptococcus neoformans	26.14	6.00e-25	108.00
IUUC-Dre-027907	Danio rerio	33.73	9.00e-66	243.00
IUUC-Dno-029225	Dasypus novemcinctus	33.02	5.00e-56	211.00
IUUC-Dor-031082	Dipodomys ordii	30.86	2.00e-24	105.00
IUUC-Dse-031308	Dothistroma septosporum	33.33	3.00e-51	195.00
IUUC-Dme-032189	Drosophila melanogaster	28.77	2.00e-44	172.00
IUUC-Ete-032247	Echinops telfairi	30.88	7.00e-49	187.00
IUUC-Eca-034285	Equus caballus	33.25	1.00e-55	209.00
IUUC-Eeu-035322	Erinaceus europaeus	28.82	1.00e-44	173.00
IUUC-Fca-036114	Felis catus	33.02	3.00e-55	208.00
IUUC-Fal-036891	Ficedula albicollis	34.52	1.00e-51	196.00
IUUC-Fox-037965	Fusarium oxysporum	26.88	2.00e-33	135.00
IUUC-Fso-038244	Fusarium solani	26.25	3.00e-35	142.00
IUUC-Gmo-039040	Gadus morhua	32.86	8.00e-66	243.00
IUUC-Ggr-040093	Gaeumannomyces graminis	23.55	1.00e-25	110.00
IUUC-Gga-040610	Gallus gallus	34.36	4.00e-62	231.00
IUUC-Gac-042117	Gasterosteus aculeatus	31.83	1.00e-61	229.00
IUUC-Gma-043756	Glycine max	64.50	4.00e-168	583.00
IUUC-Ggo-045179	Gorilla gorilla	32.78	1.00e-53	202.00
IUUC-Hsa-046114	Homo sapiens	33.02	6.00e-54	204.00
IUUC-Hvu-047331	Hordeum vulgare	97.24	0.00e+00	771.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	33.25	3.00e-56	211.00
IUUC-Kpa-049304	Komagataella pastoris	27.80	4.00e-42	164.00
IUUC-Lch-050655	Latimeria chalumnae	30.03	8.00e-40	156.00
IUUC-Lpe-051675	Leersia perrieri	84.72	0.00e+00	759.00
IUUC-Loc-052868	Lepisosteus oculatus	33.73	3.00e-65	241.00
IUUC-Lma-053258	Leptosphaeria maculans	30.83	4.00e-43	170.00
IUUC-Laf-053993	Loxodonta africana	33.25	3.00e-56	211.00
IUUC-Mcc-055128	Macaca mulatta	25.42	4.00e-31	127.00
IUUC-Meu-056501	Macropus eugenii	33.63	2.00e-48	185.00
IUUC-Mor-057114	Magnaporthe oryzae	29.28	2.00e-37	149.00
IUUC-Mpo-057463	Magnaporthe poae	31.07	4.00e-18	84.00
IUUC-Mtr-058367	Medicago truncatula	61.02	8.00e-155	539.00
IUUC-Mla-059107	Melampsora laricipopulina	25.70	2.00e-37	149.00
IUUC-Mga-059745	Meleagris gallopavo	34.41	3.00e-60	224.00
IUUC-Mvi-060362	Microbotryum violaceum	26.69	4.00e-31	128.00
IUUC-Mdo-062257	Monodelphis domestica	33.89	2.00e-61	228.00
IUUC-Mmu-063546	Mus musculus	31.67	4.00e-55	207.00
IUUC-Mac-065540	Musa acuminata	71.29	0.00e+00	634.00
IUUC-Mpu-066284	Mustela putorius furo	32.78	2.00e-55	209.00
IUUC-Mlu-067241	Myotis lucifugus	33.49	1.00e-56	213.00
IUUC-Nfi-068260	Neosartorya fischeri	30.08	1.00e-41	163.00
IUUC-Ncr-068719	Neurospora crassa	29.18	9.00e-34	137.00
IUUC-Nle-068981	Nomascus leucogenys	33.25	5.00e-53	201.00
IUUC-Opr-071218	Ochotona princeps	31.77	2.00e-51	196.00
IUUC-Ont-071646	Oreochromis niloticus	32.30	7.00e-57	213.00
IUUC-Oan-073453	Ornithorhynchus anatinus	33.89	1.00e-65	242.00
IUUC-Ocu-074008	Oryctolagus cuniculus	33.25	2.00e-56	212.00
IUUC-Oba-075712	Oryza barthii	72.92	6.00e-180	622.00
IUUC-Obr-076721	Oryza brachyantha	83.80	0.00e+00	754.00
IUUC-Ogl-077229	Oryza glaberrima	84.72	0.00e+00	759.00
IUUC-Ogu-078977	Oryza glumaepatula	73.55	0.00e+00	627.00
IUUC-Oin-079683	Oryza indica	84.72	0.00e+00	760.00
IUUC-Olo-080291	Oryza longistaminata	63.00	9.00e-128	448.00
IUUC-Ome-081834	Oryza meridionalis	85.98	0.00e+00	762.00
IUUC-Oni-082507	Oryza nivara	82.18	0.00e+00	724.00
IUUC-Opu-083396	Oryza punctata	84.26	0.00e+00	757.00
IUUC-Oru-085220	Oryza rufipogon	82.41	0.00e+00	726.00
IUUC-Osa-085767	Oryza sativa	84.72	0.00e+00	760.00
IUUC-Ola-087420	Oryzias latipes	32.30	2.00e-64	239.00
IUUC-Olu-087740	Ostreococcus lucimarinus	32.40	6.00e-63	234.00
IUUC-Oga-088264	Otolemur garnettii	32.14	1.00e-53	202.00
IUUC-Oar-089335	Ovis aries	32.78	1.00e-56	213.00
IUUC-Ptr-091320	Pan troglodytes	33.02	6.00e-54	204.00
IUUC-Pan-092833	Papio anubis	32.78	7.00e-54	203.00
IUUC-Psi-093504	Pelodiscus sinensis	32.07	2.00e-56	212.00
IUUC-Pma-094189	Petromyzon marinus	35.05	9.00e-61	226.00
IUUC-Pno-094929	Phaeosphaeria nodorum	29.23	1.00e-40	159.00
IUUC-Ppa-095429	Physcomitrella patens	52.10	4.00e-128	450.00
IUUC-Pfo-096337	Poecilia formosa	32.55	8.00e-64	236.00
IUUC-Pab-097571	Pongo abelii	33.02	7.00e-54	204.00
IUUC-Pop-099977	Populus trichocarpa	65.98	1.00e-171	595.00
IUUC-Pca-100394	Procavia capensis	31.67	5.00e-46	177.00
IUUC-Ppe-101848	Prunus persica	61.81	4.00e-165	573.00
IUUC-Pva-102921	Pteropus vampyrus	30.09	5.00e-23	101.00
IUUC-Pgr-103637	Puccinia graminis	26.81	2.00e-37	149.00
IUUC-Ptt-103781	Puccinia triticina	28.09	4.00e-36	145.00
IUUC-Pte-104135	Pyrenophora teres	29.61	2.00e-41	164.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	29.72	3.00e-44	171.00
IUUC-Rno-105114	Rattus norvegicus	32.14	5.00e-55	207.00
IUUC-Sce-106401	Saccharomyces cerevisiae	30.52	1.00e-47	183.00
IUUC-Sha-107122	Sarcophilus harrisii	33.81	6.00e-61	227.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	28.22	1.00e-40	159.00
IUUC-Spo-108134	Schizosaccharomyces pombe	28.12	2.00e-39	155.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	28.60	1.00e-42	166.00
IUUC-Smo-108720	Selaginella moellendorffii	50.59	9.00e-123	432.00
IUUC-Sit-110354	Setaria italica	87.33	0.00e+00	796.00
IUUC-Sly-111023	Solanum lycopersicum	58.96	2.00e-155	541.00
IUUC-Stu-112778	Solanum tuberosum	64.65	9.00e-164	568.00
IUUC-Sar-113596	Sorex araneus	30.48	7.00e-41	160.00
IUUC-Sbi-114193	Sorghum bicolor	84.33	0.00e+00	725.00
IUUC-Sre-115002	Sporisorium reilianum	28.38	7.00e-17	81.30
IUUC-Ssc-116066	Sus scrofa	32.78	8.00e-56	210.00
IUUC-Tgu-117048	Taeniopygia guttata	35.19	3.00e-57	214.00
IUUC-Tni-119820	Tetraodon nigroviridis	33.89	7.00e-61	227.00
IUUC-Tca-121605	Theobroma cacao	65.36	3.00e-171	593.00
IUUC-Tre-121947	Trichoderma reesei	27.05	2.00e-35	142.00
IUUC-Tvi-122481	Trichoderma virens	26.88	4.00e-35	141.00
IUUC-Tae-123847	Triticum aestivum	100.00	0.00e+00	886.00
IUUC-Tur-126586	Triticum urartu	99.50	0.00e+00	809.00
IUUC-Tme-126900	Tuber melanosporum	32.05	4.00e-54	204.00
IUUC-Tbe-127736	Tupaia belangeri	36.36	3.00e-20	92.00
IUUC-Ttr-129041	Tursiops truncatus	28.81	7.00e-40	157.00
IUUC-Uma-129628	Ustilago maydis	24.55	2.00e-09	56.60
IUUC-Vpa-130260	Vicugna pacos	33.02	4.00e-56	211.00
IUUC-Vvi-131009	Vitis vinifera	67.36	7.00e-179	619.00
IUUC-Xtr-132083	Xenopus tropicalis	34.29	1.00e-61	229.00
IUUC-Xma-133094	Xiphophorus maculatus	32.30	2.00e-62	232.00
IUUC-Yli-134531	Yarrowia lipolytica	26.67	9.00e-32	130.00
IUUC-Zma-135509	Zea mays	83.41	0.00e+00	756.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence