iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Dre-028238

Ensembl Protein ID

ENSDARP00000110667.2

UniProt Accession

B0S6L0; B0S6L0_DANRE

Genbank Protein ID

ENSDARP00000110667

Protein Name

Lysine (K)-specific demethylase 5C

Genbank Nucleotide ID

BX537348

Gene Name

kdm5c

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSDARG00000006124.11	ENSDART00000127053.2	ENSDARP00000110667.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	6.00e-10	40.1	360	407

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 3    vClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCrs 53
           vC +Cg+g+ede +l+ C+ C++++H  Cl ++  ++ p+ + w CpkC +
   Q: 360  VCRMCGRGDEDE-KLMLCDGCDDNYHTFCLIPP-LTDPPKGN-WRCPKCVA 407
           8*********88.6*******************.77777775.******75 PP

Organism

Danio rerio

Protein Sequence
(Fasta)

MMDVGEEFVP PPECPVFEPS WEEFADPLGY IAKIRPIAEK SGICKIRPPP DWQPPFAVEV 60
DNFHFTPRIQ RLNELEAETR VKLNYLDRIA KFWEIQGSSL KIPNLERRIL DLFSLAKIVT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTGATGAAAC CAAGATGGCG TGTAGTTCAG ACAGGATGAA CGGTGGATAG GTGACGGGGA 60
AGGAAACACT GGAAAACAAC GCGTATTTTG TGCTCGCGCA CGAAAACGGT TATTATAAAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001606--ARID_dom
IPR003347--JmjC_dom
IPR003349--JmjN
IPR013637--Lys_sp_deMease-like_dom
IPR019786--Zinc_finger_PHD-type_CS
IPR004198--Znf_C5HC2
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51011--ARID
PS51184--JMJC
PS51183--JMJN
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF01388--ARID
PF02373--JmjC
PF02375--JmjN
PF00628--PHD
PF08429--PLU-1
PF02928--zf-C5HC2

SMART

SM00501--BRIGHT
SM00558--JmjC
SM00545--JmjN
SM00249--PHD

Gene Ontology

GO:0005634--C:nucleus
GO:0003677--F:DNA binding
GO:0016706--F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0008270--F:zinc ion binding
GO:0043524--P:negative regulation of neuron apoptotic process

KEGG

dre:553406

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001327	Ailuropoda melanoleuca	62.68	0.00e+00	1748.00
IUUC-Aca-004712	Anolis carolinensis	60.47	0.00e+00	1588.00
IUUC-Afl-008625	Aspergillus flavus	30.99	4.00e-140	493.00
IUUC-Aor-010155	Aspergillus oryzae	30.99	4.00e-140	493.00
IUUC-Bta-013099	Bos taurus	62.10	0.00e+00	1742.00
IUUC-Bol-015336	Brassica oleracea	33.64	7.00e-14	74.30
IUUC-Cja-018723	Callithrix jacchus	65.00	0.00e+00	1700.00
IUUC-Cfa-020954	Canis familiaris	62.86	0.00e+00	1761.00
IUUC-Cpo-021718	Cavia porcellus	76.98	0.00e+00	1109.00
IUUC-Csa-023946	Chlorocebus sabaeus	63.27	0.00e+00	1777.00
IUUC-Csv-026185	Ciona savignyi	43.55	0.00e+00	1124.00
IUUC-Dno-029435	Dasypus novemcinctus	62.18	0.00e+00	1750.00
IUUC-Dor-030226	Dipodomys ordii	65.43	0.00e+00	1115.00
IUUC-Eca-033834	Equus caballus	62.61	0.00e+00	1767.00
IUUC-Eeu-034692	Erinaceus europaeus	61.13	0.00e+00	1300.00
IUUC-Fca-035766	Felis catus	60.00	0.00e+00	1627.00
IUUC-Fso-038127	Fusarium solani	29.59	2.00e-110	394.00
IUUC-Gmo-039140	Gadus morhua	77.76	0.00e+00	1880.00
IUUC-Gac-041825	Gasterosteus aculeatus	72.48	0.00e+00	2122.00
IUUC-Ggo-045492	Gorilla gorilla	62.87	0.00e+00	1780.00
IUUC-Hsa-046737	Homo sapiens	62.74	0.00e+00	1768.00
IUUC-Itr-048348	Ictidomys tridecemlineatus	62.94	0.00e+00	1796.00
IUUC-Lch-050517	Latimeria chalumnae	63.23	0.00e+00	1829.00
IUUC-Laf-054098	Loxodonta africana	59.64	0.00e+00	1615.00
IUUC-Mcc-055740	Macaca mulatta	63.00	0.00e+00	1786.00
IUUC-Meu-056643	Macropus eugenii	60.47	0.00e+00	1658.00
IUUC-Mpo-057317	Magnaporthe poae	30.07	5.00e-135	476.00
IUUC-Mmr-061032	Microcebus murinus	62.74	0.00e+00	1776.00
IUUC-Mdo-062754	Monodelphis domestica	58.83	0.00e+00	1613.00
IUUC-Mmu-063943	Mus musculus	62.64	0.00e+00	1782.00
IUUC-Mac-065069	Musa acuminata	34.23	1.00e-08	57.00
IUUC-Mpu-066800	Mustela putorius furo	62.16	0.00e+00	1743.00
IUUC-Mlu-067109	Myotis lucifugus	62.71	0.00e+00	1750.00
IUUC-Nfi-068430	Neosartorya fischeri	31.81	1.00e-148	521.00
IUUC-Ncr-068763	Neurospora crassa	29.19	3.00e-139	490.00
IUUC-Nle-069569	Nomascus leucogenys	66.21	0.00e+00	1758.00
IUUC-Ont-072274	Oreochromis niloticus	72.82	0.00e+00	2177.00
IUUC-Oan-073160	Ornithorhynchus anatinus	62.77	0.00e+00	1714.00
IUUC-Ocu-074440	Oryctolagus cuniculus	62.61	0.00e+00	1759.00
IUUC-Oin-079273	Oryza indica	47.46	1.00e-14	72.40
IUUC-Ola-087059	Oryzias latipes	72.45	0.00e+00	2153.00
IUUC-Oga-088191	Otolemur garnettii	62.74	0.00e+00	1767.00
IUUC-Oar-090027	Ovis aries	62.17	0.00e+00	1743.00
IUUC-Ptr-091415	Pan troglodytes	59.36	0.00e+00	1682.00
IUUC-Pan-091829	Papio anubis	63.20	0.00e+00	1784.00
IUUC-Pma-094137	Petromyzon marinus	56.01	0.00e+00	1256.00
IUUC-Ppa-095839	Physcomitrella patens	40.20	9.00e-16	80.50
IUUC-Pfo-096645	Poecilia formosa	73.87	0.00e+00	2250.00
IUUC-Pab-097582	Pongo abelii	65.10	0.00e+00	1691.00
IUUC-Pca-100446	Procavia capensis	61.32	0.00e+00	1716.00
IUUC-Pva-102553	Pteropus vampyrus	70.15	0.00e+00	1249.00
IUUC-Rno-105359	Rattus norvegicus	60.67	0.00e+00	1760.00
IUUC-Sha-106769	Sarcophilus harrisii	64.51	0.00e+00	1625.00
IUUC-Sly-111298	Solanum lycopersicum	31.73	3.00e-100	361.00
IUUC-Sbi-113816	Sorghum bicolor	41.27	4.00e-13	70.90
IUUC-Ssc-116354	Sus scrofa	63.07	0.00e+00	1781.00
IUUC-Tru-117667	Takifugu rubripes	70.45	0.00e+00	1666.00
IUUC-Tni-119920	Tetraodon nigroviridis	73.22	0.00e+00	2118.00
IUUC-Tre-122213	Trichoderma reesei	29.32	7.00e-111	396.00
IUUC-Tbe-128040	Tupaia belangeri	77.76	0.00e+00	876.00
IUUC-Ttr-128979	Tursiops truncatus	62.81	0.00e+00	1768.00
IUUC-Vpa-130433	Vicugna pacos	69.60	0.00e+00	1330.00
IUUC-Xtr-132324	Xenopus tropicalis	59.75	0.00e+00	1687.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence