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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Ath-007581
UUCD1 version UUC-ArT-00858
Ensembl Protein ID AT5G56130.1
UniProt Accession Q9FKT5; THOC3_ARATH
Genbank Protein ID BAB09295.1; AED96724.1; AAM13119.1; AAN15493.1
Protein Name THO complex subunit 3; TEX1 homolog
Genbank Nucleotide ID AB011476; CP002688; AY093120; BT000174
Gene Name THO3; TEX1; At5g56130; MDA7.19
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT5G56130 AT5G56130.1 AT5G56130.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
PINAHINTMentha
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 2.50e-31 107.2 64 103
UBD/Beta-Prp 4.50e-45 155.0 114 296
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 1    gHtdsvtclaf...sdtllvsGsdDgtikvWDlrtgvllk 37
           gHtdsv  l++   +++l++++s+D+++++WD r+g++++
   Q: 64   GHTDSVDQLCWdpkHSDLVATASGDKSVRLWDARSGKCTQ 103
           8***********763399********************98 PP
   

   UBD/Beta-Prp
   S: 58   vkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsG 155
           ++++pdg   + g +D+ + + d++++k++h  k  +++v  ++++  gd++  ++   t++v   ++ + l  tl+ h++   c++++p+g++++ G
   Q: 114  ITYKPDGTHVAVGNRDDELTILDVRKFKPLHRRK-FNYEVNEIAWNMPGDFFFLTTGLGTVEVLSYPSLKPLD-TLTAHTAGCYCIAIDPKGRYFAVG 209
           789******************************9.****************************999******9.************************ PP
   S: 156  slDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDg 244
           s+D+ v lWd++ + +lrt+t+  + +v+ +sf+++g++++s+s+d  + + ++qtg++v++  + ++ ++sv+  p+ ++l+ +++D+
   Q: 210  SADSLVSLWDISDMLCLRTFTK-LEWPVRTISFNYSGEYIASASEDLFIDIANVQTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDK 296
           *********************9.**********************************97776665.788999*********99999997 PP
   
Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description


     Acts as component of the THO subcomplex of the TREX complex which is thought to couple mRNA transcription, processing and nuclear export. Contributes to the integrity of the endogenous trans-acting small interfering RNA (ta-siRNA) pathway. May process or transport a long RNA molecule so that it can be a template for secondary siRNA production. May participate in the trafficking of siRNA precursors to the ARGONAUTE catalytic center. Required for the generation of functional messenger ribonucleoproteins (mRNPs).
 Acts as component of the THO subcomplex of the TREX complex which is thought to couple mRNA transcription, processing and nuclear export. Contributes to the integrity of the endogenous trans-acting small interfering RNA (ta-siRNA) pathway. May process or transport a long RNA molecule so that it can be a template for secondary siRNA production. May participate in the trafficking of siRNA precursors to the ARGONAUTE catalytic center. Required for the generation of functional messenger ribonucleoproteins (mRNPs).
Protein Sequence
(Fasta)
MEETTIPFKS LHSREYQGHK KKVHSVAWNS NGTKLASGSV DQTARIWNIE PHGHSKAKDL 60
ELKGHTDSVD QLCWDPKHSD LVATASGDKS VRLWDARSGK CTQQVELSGE NINITYKPDG 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Ath-007581|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
GGAAGGTTGA AGAAGAAGAG TTGAGAATTA AAAAATGGAG GAGACGACGA TTCCTTTCAA 60
GAGCTTACAT AGCAGAGAAT ATCAAGGTCA TAAGAAGAAG GTTTTTTTTT TCTATCTCCA 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Ath-007581|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0507--mRNA processing
KW-0508--mRNA splicing
KW-0509--mRNA transport
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0694--RNA-binding
KW-0943--RNA-mediated gene silencing
KW-0813--Transport
KW-0853--WD repeat
Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00320--WD40
Gene Ontology

GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:0000347--C:THO complex
GO:0000445--C:THO complex part of transcription export complex
GO:0003723--F:RNA binding
GO:0031047--P:gene silencing by RNA
GO:0006406--P:mRNA export from nucleus
GO:0006397--P:mRNA processing
GO:0010267--P:production of ta-siRNAs involved in RNA interference
GO:0008380--P:RNA splicing
KEGG ath:AT5G56130
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000099 Aegilops tauschii 73.10 1.00e-140 491.00
IUUC-Aml-001264 Ailuropoda melanoleuca 49.34 9.00e-91 326.00
IUUC-Atr-003050 Amborella trichopoda 85.76 1.00e-166 578.00
IUUC-Apl-003426 Anas platyrhynchos 43.89 3.00e-65 241.00
IUUC-Aca-004931 Anolis carolinensis 47.71 8.00e-64 235.00
IUUC-Aly-006237 Arabidopsis lyrata 99.37 0.00e+00 657.00
IUUC-Acl-008253 Aspergillus clavatus 30.54 7.00e-44 170.00
IUUC-Afl-008519 Aspergillus flavus 33.76 3.00e-47 181.00
IUUC-Afu-008886 Aspergillus fumigatus 28.46 2.00e-40 159.00
IUUC-Ani-009275 Aspergillus nidulans 32.34 1.00e-45 176.00
IUUC-Ang-009862 Aspergillus niger 34.19 4.00e-47 181.00
IUUC-Ate-010247 Aspergillus terreus 32.47 3.00e-43 168.00
IUUC-Ame-010828 Astyanax mexicanus 50.66 1.00e-92 332.00
IUUC-Bgr-012163 Blumeria graminis 31.91 7.00e-37 146.00
IUUC-Bta-013514 Bos taurus 43.05 7.00e-77 280.00
IUUC-Bci-013639 Botrytis cinerea 32.13 3.00e-47 181.00
IUUC-Bdi-015049 Brachypodium distachyon 76.51 3.00e-146 509.00
IUUC-Bol-015401 Brassica oleracea 89.75 1.00e-172 598.00
IUUC-Bra-017867 Brassica rapa 90.06 5.00e-173 599.00
IUUC-Cel-018699 Caenorhabditis elegans 29.39 2.00e-34 139.00
IUUC-Cja-019591 Callithrix jacchus 49.34 6.00e-91 326.00
IUUC-Cfa-020692 Canis familiaris 49.34 6.00e-91 326.00
IUUC-Cpo-022135 Cavia porcellus 43.28 5.00e-71 260.00
IUUC-Cre-022572 Chlamydomonas reinhardtii 33.44 4.00e-47 181.00
IUUC-Csa-023408 Chlorocebus sabaeus 49.34 8.00e-91 326.00
IUUC-Cho-024340 Choloepus hoffmanni 48.53 3.00e-57 213.00
IUUC-Cin-025418 Ciona intestinalis 53.03 7.00e-41 158.00
IUUC-Csv-026130 Ciona savignyi 54.00 2.00e-99 354.00
IUUC-Cgl-026744 Colletotrichum gloeosporioides 33.23 2.00e-48 185.00
IUUC-Cne-026775 Cryptococcus neoformans 44.12 1.00e-22 100.00
IUUC-Dre-028634 Danio rerio 50.66 2.00e-92 331.00
IUUC-Dno-029449 Dasypus novemcinctus 49.34 6.00e-91 326.00
IUUC-Dor-030301 Dipodomys ordii 53.55 3.00e-51 194.00
IUUC-Dse-031341 Dothistroma septosporum 29.97 9.00e-35 140.00
IUUC-Dme-031674 Drosophila melanogaster 51.17 7.00e-85 306.00
IUUC-Ete-033136 Echinops telfairi 49.34 2.00e-90 324.00
IUUC-Eca-034432 Equus caballus 45.57 8.00e-83 299.00
IUUC-Fca-035694 Felis catus 49.34 6.00e-91 326.00
IUUC-Fal-037328 Ficedula albicollis 49.67 4.00e-91 327.00
IUUC-Fox-037894 Fusarium oxysporum 32.21 1.00e-49 189.00
IUUC-Fso-038266 Fusarium solani 31.29 1.00e-45 176.00
IUUC-Gmo-039617 Gadus morhua 50.33 8.00e-91 326.00
IUUC-Ggr-039819 Gaeumannomyces graminis 30.87 1.00e-40 159.00
IUUC-Gga-041164 Gallus gallus 49.67 8.00e-91 326.00
IUUC-Gac-042407 Gasterosteus aculeatus 50.66 1.00e-92 332.00
IUUC-Gma-043663 Glycine max 87.94 5.00e-169 585.00
IUUC-Ggo-044989 Gorilla gorilla 49.34 7.00e-91 326.00
IUUC-Hsa-046784 Homo sapiens 49.34 8.00e-91 326.00
IUUC-Hvu-047633 Hordeum vulgare 76.96 3.00e-101 360.00
IUUC-Itr-048184 Ictidomys tridecemlineatus 35.31 9.00e-51 193.00
IUUC-Lch-049894 Latimeria chalumnae 49.34 2.00e-91 327.00
IUUC-Lpe-051061 Leersia perrieri 68.79 3.00e-122 430.00
IUUC-Loc-052424 Lepisosteus oculatus 50.66 6.00e-93 333.00
IUUC-Lma-053127 Leptosphaeria maculans 31.80 4.00e-48 185.00
IUUC-Laf-053396 Loxodonta africana 49.67 3.00e-91 327.00
IUUC-Mcc-055517 Macaca mulatta 49.34 8.00e-91 326.00
IUUC-Meu-056034 Macropus eugenii 49.34 6.00e-91 326.00
IUUC-Mor-057011 Magnaporthe oryzae 28.37 8.00e-27 113.00
IUUC-Mpo-057490 Magnaporthe poae 30.77 2.00e-40 159.00
IUUC-Mtr-057927 Medicago truncatula 85.71 2.00e-164 570.00
IUUC-Mla-058945 Melampsora laricipopulina 38.23 1.00e-50 192.00
IUUC-Mga-060155 Meleagris gallopavo 51.68 5.00e-75 273.00
IUUC-Mvi-060344 Microbotryum violaceum 30.91 1.00e-42 166.00
IUUC-Mmr-060834 Microcebus murinus 49.67 2.00e-91 328.00
IUUC-Mdo-063073 Monodelphis domestica 50.66 1.00e-85 308.00
IUUC-Mmu-063395 Mus musculus 49.34 6.00e-91 326.00
IUUC-Mac-064579 Musa acuminata 84.76 4.00e-164 569.00
IUUC-Mpu-066688 Mustela putorius furo 52.17 5.00e-81 293.00
IUUC-Mlu-067299 Myotis lucifugus 49.34 6.00e-91 326.00
IUUC-Nfi-068562 Neosartorya fischeri 29.64 1.00e-42 166.00
IUUC-Ncr-068654 Neurospora crassa 31.15 5.00e-42 164.00
IUUC-Nle-069736 Nomascus leucogenys 48.68 1.00e-88 318.00
IUUC-Ont-071763 Oreochromis niloticus 50.66 6.00e-93 333.00
IUUC-Ocu-074909 Oryctolagus cuniculus 49.34 6.00e-91 326.00
IUUC-Oba-075902 Oryza barthii 68.59 1.00e-122 432.00
IUUC-Obr-076613 Oryza brachyantha 75.96 2.00e-142 497.00
IUUC-Ogl-077009 Oryza glaberrima 75.96 7.00e-143 499.00
IUUC-Ogu-078344 Oryza glumaepatula 68.59 1.00e-122 432.00
IUUC-Oin-079773 Oryza indica 75.96 7.00e-143 499.00
IUUC-Olo-080474 Oryza longistaminata 71.92 1.00e-83 301.00
IUUC-Ome-081837 Oryza meridionalis 66.27 6.00e-59 218.00
IUUC-Oni-082263 Oryza nivara 68.59 1.00e-122 432.00
IUUC-Opu-083813 Oryza punctata 76.28 1.00e-143 501.00
IUUC-Oru-084610 Oryza rufipogon 68.59 9.00e-123 432.00
IUUC-Osa-085415 Oryza sativa 75.64 2.00e-142 497.00
IUUC-Ola-086659 Oryzias latipes 50.99 4.00e-93 333.00
IUUC-Olu-087649 Ostreococcus lucimarinus 42.40 3.00e-63 234.00
IUUC-Oga-087923 Otolemur garnettii 49.67 2.00e-91 328.00
IUUC-Oar-089688 Ovis aries 49.34 2.00e-90 325.00
IUUC-Ptr-091628 Pan troglodytes 49.34 8.00e-91 326.00
IUUC-Pan-092586 Papio anubis 48.85 3.00e-89 321.00
IUUC-Psi-093701 Pelodiscus sinensis 50.78 6.00e-61 226.00
IUUC-Pma-094465 Petromyzon marinus 49.51 1.00e-89 322.00
IUUC-Pno-094767 Phaeosphaeria nodorum 32.85 2.00e-46 180.00
IUUC-Ppa-095195 Physcomitrella patens 83.33 3.00e-158 550.00
IUUC-Pfo-097383 Poecilia formosa 50.66 2.00e-92 331.00
IUUC-Pab-098669 Pongo abelii 49.34 8.00e-91 326.00
IUUC-Pop-099409 Populus trichocarpa 87.30 4.00e-169 586.00
IUUC-Pca-100769 Procavia capensis 43.46 4.00e-71 260.00
IUUC-Ppe-101321 Prunus persica 86.03 2.00e-166 577.00
IUUC-Pva-102759 Pteropus vampyrus 49.34 4.00e-91 327.00
IUUC-Pgr-103535 Puccinia graminis 39.42 1.00e-55 209.00
IUUC-Ptt-103820 Puccinia triticina 38.46 1.00e-55 209.00
IUUC-Pte-104271 Pyrenophora teres 31.77 2.00e-42 165.00
IUUC-Pyt-104500 Pyrenophora triticirepentis 32.92 9.00e-40 157.00
IUUC-Rno-106126 Rattus norvegicus 49.34 6.00e-91 326.00
IUUC-Sha-107146 Sarcophilus harrisii 48.34 4.00e-88 317.00
IUUC-Sja-107865 Schizosaccharomyces japonicus 36.71 2.00e-58 218.00
IUUC-Spo-108324 Schizosaccharomyces pombe 36.77 2.00e-57 215.00
IUUC-Smo-109360 Selaginella moellendorffii 78.86 7.00e-155 539.00
IUUC-Sit-110773 Setaria italica 76.30 2.00e-140 491.00
IUUC-Sly-111619 Solanum lycopersicum 87.14 6.00e-168 582.00
IUUC-Stu-112241 Solanum tuberosum 87.14 4.00e-167 579.00
IUUC-Sbi-114842 Sorghum bicolor 75.97 3.00e-139 486.00
IUUC-Sre-115070 Sporisorium reilianum 33.93 4.00e-49 187.00
IUUC-Ssc-115581 Sus scrofa 49.34 6.00e-91 326.00
IUUC-Tgu-117354 Taeniopygia guttata 49.66 2.00e-87 314.00
IUUC-Tru-117745 Takifugu rubripes 49.34 2.00e-90 324.00
IUUC-Tni-120050 Tetraodon nigroviridis 49.01 8.00e-89 319.00
IUUC-Tca-121279 Theobroma cacao 88.57 5.00e-171 592.00
IUUC-Tre-121952 Trichoderma reesei 33.85 2.00e-52 198.00
IUUC-Tvi-122581 Trichoderma virens 33.54 7.00e-52 196.00
IUUC-Tae-125697 Triticum aestivum 75.56 7.00e-145 505.00
IUUC-Tur-126279 Triticum urartu 73.40 4.00e-139 486.00
IUUC-Tme-127000 Tuber melanosporum 33.71 1.00e-45 176.00
IUUC-Ttr-128405 Tursiops truncatus 50.00 3.00e-80 290.00
IUUC-Uma-129547 Ustilago maydis 34.81 2.00e-48 186.00
IUUC-Vda-129689 Verticillium dahliae 31.76 8.00e-42 163.00
IUUC-Vvi-131345 Vitis vinifera 88.57 1.00e-170 591.00
IUUC-Xtr-132136 Xenopus tropicalis 49.50 3.00e-91 327.00
IUUC-Xma-133767 Xiphophorus maculatus 50.66 2.00e-92 331.00
IUUC-Yli-134522 Yarrowia lipolytica 26.88 6.00e-29 120.00
IUUC-Zma-135816 Zea mays 75.00 2.00e-137 481.00
Created Date 25-Jun-2017

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