iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSRNOG00000016145.6	ENSRNOT00000089715.1	ENSRNOP00000070127.1
ENSRNOG00000016145.6	ENSRNOT00000021976.5	ENSRNOP00000021976.3

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC	RAID2
Protein-protein Interaction
IID	HINT
Post-translational Modifications (PTMs)
dbPAF
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.40e-27	93.7	548	580
UBD/Beta-Prp	7.80e-47	160.3	597	758

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlr 31
           gH d v++laf ++  +l+s+s Dgti++WD++
   Q: 548  GHGDAVWGLAFsPTsQRLASCSADGTIRIWDPS 580
           8***********7779***************75 PP

UBD/Beta-Prp

   S: 11   svitcvkf.spdksllatgsrdgtikvwdvttgkllrsl.sgheae...vtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghe 94
           +  t+v+f s +  ++++++r+g + ++d++ g +l +l s  +++   +++v  +p++++ +t+++Dr i+  d +tgk vh++ +h 
   Q: 597  GIPTSVAFtSTEPAHVVASFRSGDTVLYDLEAGGALLTLeSRGSSGptqINQVVSHPNQPLTITAHDDRGIRFLDNRTGKSVHSMVAHL 685
           467889999999999********************88885444444566**************************************** PP
   S: 95   dsvlslsfspsgdklvsGshdrtirvwdletgqclee...tlsghdgvvncvvvhpdgnllvsGslDrtvrlW 164
           d v++l+++p+g +l sGshd  +r+w l++++c++e     ++h++++  v+ hp++ l++s+++D   +++
   Q: 686  DAVTCLAVDPNGVFLMSGSHDCSLRLWSLDNKTCVQEitaHRKKHEEAIHAVACHPSKALIASAGADALAKVF 758
           *************************************999999************************988887 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MMEERAAAAV ASAASCRPLG SGTAPNPTAA APASSPAPGP GPVGKGGGGG GSPGPTAGPE 60
PLSLPGILHF IQHEWARFEA EKARWEAERA ELQAQVAFLQ GERKGQENLK TDLVRRIKML 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGCGGGGCGC GCTGGGCGCT GGGCCGTAGC GCGCAGTCCA CTCCCTCAAG CTGACGTTCA 60
GTGCCAGGCA CCGCGCTGGG TTGGTAGTGG CGACCGGGGC GGCTACGAGG CGCGCGCTGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR013258--Striatin_N
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08232--Striatin
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0043197--C:dendritic spine
GO:0043234--C:protein complex
GO:0000159--C:protein phosphatase type 2A complex
GO:0032403--F:protein complex binding
GO:0019904--F:protein domain specific binding

KEGG

rno:308392

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001946	Ailuropoda melanoleuca	80.03	0.00e+00	1000.00
IUUC-Aca-004552	Anolis carolinensis	78.98	0.00e+00	1013.00
IUUC-Acl-008170	Aspergillus clavatus	26.39	9.00e-27	115.00
IUUC-Bta-012550	Bos taurus	91.63	0.00e+00	1055.00
IUUC-Cja-018978	Callithrix jacchus	92.89	0.00e+00	952.00
IUUC-Cfa-020268	Canis familiaris	95.14	0.00e+00	1080.00
IUUC-Cpo-022102	Cavia porcellus	94.81	0.00e+00	1107.00
IUUC-Csa-023969	Chlorocebus sabaeus	95.71	0.00e+00	1156.00
IUUC-Dre-027638	Danio rerio	61.01	0.00e+00	810.00
IUUC-Dno-029256	Dasypus novemcinctus	95.89	0.00e+00	664.00
IUUC-Dor-031032	Dipodomys ordii	94.86	0.00e+00	1116.00
IUUC-Eca-033515	Equus caballus	94.15	0.00e+00	1111.00
IUUC-Eeu-035033	Erinaceus europaeus	80.00	1.00e-128	453.00
IUUC-Fca-035749	Felis catus	93.12	0.00e+00	1060.00
IUUC-Gmo-039274	Gadus morhua	60.25	0.00e+00	776.00
IUUC-Gac-042099	Gasterosteus aculeatus	59.66	0.00e+00	783.00
IUUC-Ggo-045406	Gorilla gorilla	95.57	0.00e+00	1130.00
IUUC-Hsa-046341	Homo sapiens	95.57	0.00e+00	1130.00
IUUC-Itr-048200	Ictidomys tridecemlineatus	95.95	0.00e+00	1122.00
IUUC-Lch-049604	Latimeria chalumnae	64.10	0.00e+00	818.00
IUUC-Loc-052671	Lepisosteus oculatus	60.46	0.00e+00	810.00
IUUC-Laf-054531	Loxodonta africana	95.57	0.00e+00	1027.00
IUUC-Mcc-055737	Macaca mulatta	90.29	0.00e+00	1099.00
IUUC-Meu-056845	Macropus eugenii	86.70	0.00e+00	1025.00
IUUC-Mmr-061153	Microcebus murinus	95.71	0.00e+00	1159.00
IUUC-Mdo-062739	Monodelphis domestica	81.62	0.00e+00	967.00
IUUC-Mmu-063564	Mus musculus	98.57	0.00e+00	1167.00
IUUC-Mpu-065794	Mustela putorius furo	92.66	0.00e+00	1012.00
IUUC-Nfi-068560	Neosartorya fischeri	25.91	3.00e-26	114.00
IUUC-Nle-069587	Nomascus leucogenys	86.20	0.00e+00	998.00
IUUC-Opr-071219	Ochotona princeps	73.95	0.00e+00	817.00
IUUC-Ont-071528	Oreochromis niloticus	56.42	0.00e+00	762.00
IUUC-Ocu-073953	Oryctolagus cuniculus	90.77	0.00e+00	947.00
IUUC-Ola-086888	Oryzias latipes	62.38	1.00e-155	543.00
IUUC-Oga-088280	Otolemur garnettii	95.95	0.00e+00	1142.00
IUUC-Oar-090381	Ovis aries	87.42	0.00e+00	977.00
IUUC-Ptr-090704	Pan troglodytes	92.29	0.00e+00	1071.00
IUUC-Pan-092058	Papio anubis	95.71	0.00e+00	1155.00
IUUC-Psi-093535	Pelodiscus sinensis	73.71	0.00e+00	689.00
IUUC-Pfo-096556	Poecilia formosa	60.31	0.00e+00	791.00
IUUC-Pab-098573	Pongo abelii	95.65	0.00e+00	1105.00
IUUC-Pca-100746	Procavia capensis	90.54	0.00e+00	997.00
IUUC-Pva-102823	Pteropus vampyrus	94.45	0.00e+00	1108.00
IUUC-Ssc-116050	Sus scrofa	94.00	0.00e+00	890.00
IUUC-Tru-117971	Takifugu rubripes	60.70	0.00e+00	799.00
IUUC-Tni-120522	Tetraodon nigroviridis	61.62	0.00e+00	814.00
IUUC-Tbe-128127	Tupaia belangeri	94.36	0.00e+00	634.00
IUUC-Ttr-128911	Tursiops truncatus	87.39	0.00e+00	1016.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence