iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT5G01770	AT5G01770.3	AT5G01770.3
AT5G01770	AT5G01770.5	AT5G01770.5
AT5G01770	AT5G01770.2	AT5G01770.2
AT5G01770	AT5G01770.1	AT5G01770.1
AT5G01770	AT5G01770.4	AT5G01770.4

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.10e-09	37.3	1175	1195

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 14   tllvsGsdDgtikvWDlrtgv 34
             l++G  Dg+++++D+rt +
   Q: 1175 SQLAAGFADGSVRLYDVRTPD 1195
           5799999**********9976 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Probable component of the plant TOR kinase pathway.

Protein Sequence
(Fasta)

MALGDLMVSR LSQSSVTVVT NHLYDDDDNC ASSAHDDSRV SIIASPRVAS SSYENLSAAT 60
SMAYLPQTLV LCDLRHDDAS DIVQPPRWRL KERMKTGCVA LVMCLHITVD PPDVIKISPC 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCTGACGACA AAATCCCAAA ATTTGGCATT TCTCCACATT TCTCTCTTTG TGCACCACCA 60
TCTAACTCTT CATCTCCTCC GGTGTTCCTA GGGCTTCCGC TTCGCTCTTC TCCGTCCTTA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR029030--Caspase-like_dom
IPR004083--Raptor
IPR029347--Raptor_N
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50294--WD_REPEATS_REGION

Pfam

PF14538--Raptor_N

SMART

SM01302--Raptor_N
SM00320--WD40

Gene Ontology

GO:0005737--C:cytoplasm
GO:0031931--C:TORC1 complex
GO:0030674--F:protein binding, bridging
GO:0071230--P:cellular response to amino acid stimulus
GO:0009267--P:cellular response to starvation
GO:0030307--P:positive regulation of cell growth
GO:0071902--P:positive regulation of protein serine/threonine kinase activity
GO:0010506--P:regulation of autophagy
GO:0008361--P:regulation of cell size
GO:0031929--P:TOR signaling

KEGG

ath:AT5G01770

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001499	Ailuropoda melanoleuca	40.84	0.00e+00	886.00
IUUC-Aly-006339	Arabidopsis lyrata	86.56	0.00e+00	2287.00
IUUC-Bgr-012085	Blumeria graminis	35.34	0.00e+00	696.00
IUUC-Bta-013422	Bos taurus	40.39	0.00e+00	889.00
IUUC-Bci-013736	Botrytis cinerea	35.93	0.00e+00	719.00
IUUC-Cja-018939	Callithrix jacchus	40.77	0.00e+00	882.00
IUUC-Cfa-020898	Canis familiaris	40.77	0.00e+00	889.00
IUUC-Csa-023314	Chlorocebus sabaeus	40.92	0.00e+00	891.00
IUUC-Dno-029901	Dasypus novemcinctus	39.95	0.00e+00	796.00
IUUC-Dor-030140	Dipodomys ordii	37.30	0.00e+00	731.00
IUUC-Fca-035651	Felis catus	40.86	0.00e+00	887.00
IUUC-Hsa-045887	Homo sapiens	40.77	0.00e+00	892.00
IUUC-Lch-050405	Latimeria chalumnae	40.76	0.00e+00	902.00
IUUC-Lma-052993	Leptosphaeria maculans	35.26	0.00e+00	757.00
IUUC-Mcc-055591	Macaca mulatta	40.92	0.00e+00	891.00
IUUC-Mmu-063264	Mus musculus	40.46	0.00e+00	890.00
IUUC-Mlu-067344	Myotis lucifugus	38.29	2.00e-170	592.00
IUUC-Ncr-068744	Neurospora crassa	34.77	0.00e+00	677.00
IUUC-Nle-069014	Nomascus leucogenys	40.83	0.00e+00	889.00
IUUC-Oru-085086	Oryza rufipogon	59.54	0.00e+00	1382.00
IUUC-Oar-089466	Ovis aries	39.57	0.00e+00	875.00
IUUC-Ptr-090868	Pan troglodytes	41.13	0.00e+00	897.00
IUUC-Pan-092259	Papio anubis	40.92	0.00e+00	891.00
IUUC-Pno-094789	Phaeosphaeria nodorum	33.36	0.00e+00	681.00
IUUC-Ppa-095301	Physcomitrella patens	53.65	0.00e+00	1255.00
IUUC-Pfo-096837	Poecilia formosa	40.31	0.00e+00	884.00
IUUC-Pab-097545	Pongo abelii	31.67	8.00e-77	280.00
IUUC-Pgr-103460	Puccinia graminis	44.95	4.00e-46	180.00
IUUC-Pte-104367	Pyrenophora teres	35.44	0.00e+00	756.00
IUUC-Spo-108057	Schizosaccharomyces pombe	37.53	0.00e+00	731.00
IUUC-Tgu-117361	Taeniopygia guttata	40.00	0.00e+00	844.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence