• HOME
  • BROWSE
  • SEARCH
  • LINK
  • DOWNLOAD
  • USER GUIDE
  • Protein
  • Gene
  • Annotation
  • Classification
  • Domain Profile
  • Function
  • Protein Sequence
  • Nucleotide Sequence
  • Keyword
  • GO
  • Orthology
  • TOP

Basic Information Integrated Annotations

Tag Content
UUCD2 ID IUUC-Mmu-064239
UUCD1 version UUC-MuM-00590
Ensembl Protein ID ENSMUSP00000126484.1
UniProt Accession E9PYW4; E9PYW4_MOUSE
Genbank Protein ID ENSMUSP00000126484
Protein Name E3 ubiquitin-protein ligase RNF168; RING finger protein 168; RING-type E3 ubiquitin transferase RNF168
Genbank Nucleotide ID AC126265
Gene Name Rnf168; RNF168
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSMUSG00000014074.17 ENSMUST00000155649.7 ENSMUSP00000115807.1
ENSMUSG00000014074.17 ENSMUST00000171474.1 ENSMUSP00000126484.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpressGXD
DNA & RNA Element
AREsitemiRTarBasemicroRNATRANSFAC
RepTarRAID2
Post-translational Modifications (PTMs)
PHOSIDAmUbiSiDa
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
UBD/Alpha-Helix/MIU 64.39 7.00e-157 551.00 IUUC-Hsa-046424
UBD/Alpha-Helix/UMI 64.39 7.00e-157 551.00 IUUC-Hsa-046424
E3 activity/RING/RING 64.39 7.00e-157 551.00 IUUC-Hsa-046424
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Mus musculus
Functional Description
(View)

Functional Description



     E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recruited at DNA interstrand cross-links (ICLs) sites and promotes accumulation of 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. Following DNA damage, promotes the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF8, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites. Not able to initiate 'Lys-63'-linked ubiquitination in vitro; possibly due to partial occlusion of the UBE2N/UBC13-binding region. Catalyzes monoubiquitination of 'Lys-13' and 'Lys-15' of nucleosomal histone H2A (H2AK13Ub and H2AK15Ub, respectively).
E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recruited at DNA interstrand cross-links (ICLs) sites and promotes accumulation of 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. Following DNA damage, promotes the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF8, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites. Not able to initiate 'Lys-63'-linked ubiquitination in vitro; possibly due to partial occlusion of the UBE2N/UBC13-binding region. Catalyzes monoubiquitination of 'Lys-13' and 'Lys-15' of nucleosomal histone H2A (H2AK13Ub and H2AK15Ub, respectively).
Protein Sequence
(Fasta)
MKMAAPKTSI PSLAECQCGI CMEILLEPVT LPCNHTLCNP CFQSTVEKAN LCCPFCRRRV 60
SSWTRYHTRR NSLVNTDLWE IIQKHYAKEC KLRISGQESK EIIDECQPVR RLSEPGELRR 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Mmu-064239|UBD,MIU;UBD,UMI;E3,RING|Mus musculus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CCGACTGAGC GGTTCCTTGG GGGAAGACGT GCCGTTTTGG CGGGGAATTG TGACGTCCGT 60
GGAGCCCGGG TACCTGCTCC GGCCGCGGCC AGTAGACCGA TTGGCAGGAC AGCGGGTGCG 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Mmu-064239|UBD,MIU;UBD,UMI;E3,RING|Mus musculus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0156--Chromatin regulator
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0227--DNA damage
KW-0234--DNA repair
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0808--Transferase
KW-0832--Ubl conjugation
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR034725--RNF168
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

SMART

SM00184--RING

Gene Ontology

GO:0005829--C:cytosol
GO:0005654--C:nucleoplasm
GO:0043234--C:protein complex
GO:0035861--C:site of double-strand break
GO:0000151--C:ubiquitin ligase complex
GO:0031491--F:nucleosome binding
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0006302--P:double-strand break repair
GO:0070535--P:histone H2A K63-linked ubiquitination
GO:0035518--P:histone H2A monoubiquitination
GO:0036351--P:histone H2A-K13 ubiquitination
GO:0036352--P:histone H2A-K15 ubiquitination
GO:0034244--P:negative regulation of transcription elongation from RNA polymerase II promoter
GO:0045739--P:positive regulation of DNA repair
GO:0010212--P:response to ionizing radiation
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG mmu:70238
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001573 Ailuropoda melanoleuca 65.32 2.00e-172 599.00
IUUC-Apl-003963 Anas platyrhynchos 42.88 3.00e-71 262.00
IUUC-Aca-004420 Anolis carolinensis 65.94 4.00e-45 176.00
IUUC-Ath-007019 Arabidopsis thaliana 41.33 3.00e-10 61.20
IUUC-Ame-011521 Astyanax mexicanus 54.02 2.00e-39 156.00
IUUC-Bta-013002 Bos taurus 63.64 1.00e-168 586.00
IUUC-Bol-016180 Brassica oleracea 40.00 2.00e-10 59.70
IUUC-Bra-017905 Brassica rapa 40.00 2.00e-10 59.70
IUUC-Cja-019945 Callithrix jacchus 61.40 1.00e-160 560.00
IUUC-Cfa-020533 Canis familiaris 64.32 1.00e-168 586.00
IUUC-Cpo-021643 Cavia porcellus 53.04 9.00e-116 410.00
IUUC-Csa-023638 Chlorocebus sabaeus 62.87 1.00e-172 599.00
IUUC-Cho-024319 Choloepus hoffmanni 62.81 8.00e-156 543.00
IUUC-Cin-025679 Ciona intestinalis 35.19 2.00e-18 86.30
IUUC-Csv-026052 Ciona savignyi 34.07 4.00e-19 87.80
IUUC-Dre-028519 Danio rerio 43.50 2.00e-34 139.00
IUUC-Dno-029294 Dasypus novemcinctus 64.17 5.00e-168 584.00
IUUC-Ete-032714 Echinops telfairi 44.95 6.00e-113 401.00
IUUC-Eca-033343 Equus caballus 67.69 0.00e+00 636.00
IUUC-Eeu-034633 Erinaceus europaeus 35.11 2.00e-12 66.60
IUUC-Fca-036251 Felis catus 63.86 9.00e-172 596.00
IUUC-Fal-037048 Ficedula albicollis 40.72 2.00e-70 259.00
IUUC-Gmo-039400 Gadus morhua 46.96 3.00e-31 126.00
IUUC-Gga-040444 Gallus gallus 38.84 6.00e-70 258.00
IUUC-Gac-041735 Gasterosteus aculeatus 47.62 9.00e-38 150.00
IUUC-Gma-044332 Glycine max 36.17 2.00e-12 67.00
IUUC-Ggo-044940 Gorilla gorilla 55.50 3.00e-103 368.00
IUUC-Hsa-046424 Homo sapiens 63.27 3.00e-165 575.00
IUUC-Itr-048965 Ictidomys tridecemlineatus 64.79 5.00e-161 561.00
IUUC-Lch-050649 Latimeria chalumnae 38.31 9.00e-52 197.00
IUUC-Loc-051847 Lepisosteus oculatus 35.34 2.00e-52 200.00
IUUC-Laf-053938 Loxodonta africana 59.65 5.00e-166 577.00
IUUC-Mcc-055360 Macaca mulatta 63.38 1.00e-168 586.00
IUUC-Meu-056684 Macropus eugenii 44.25 3.00e-94 338.00
IUUC-Mtr-058007 Medicago truncatula 39.24 3.00e-12 65.90
IUUC-Mga-059699 Meleagris gallopavo 39.86 7.00e-73 268.00
IUUC-Mmr-060779 Microcebus murinus 65.32 0.00e+00 635.00
IUUC-Mdo-062225 Monodelphis domestica 46.46 2.00e-99 356.00
IUUC-Mpu-066141 Mustela putorius furo 66.32 0.00e+00 639.00
IUUC-Mlu-067945 Myotis lucifugus 64.34 9.00e-170 590.00
IUUC-Nle-069769 Nomascus leucogenys 63.62 1.00e-164 573.00
IUUC-Opr-070905 Ochotona princeps 54.37 2.00e-134 472.00
IUUC-Ont-071477 Oreochromis niloticus 42.86 3.00e-36 146.00
IUUC-Oan-073531 Ornithorhynchus anatinus 35.82 4.00e-46 178.00
IUUC-Ocu-073832 Oryctolagus cuniculus 59.40 2.00e-148 518.00
IUUC-Ola-086478 Oryzias latipes 46.88 4.00e-32 130.00
IUUC-Oga-088318 Otolemur garnettii 63.53 1.00e-170 593.00
IUUC-Oar-089647 Ovis aries 62.17 3.00e-164 571.00
IUUC-Ptr-090516 Pan troglodytes 63.92 5.00e-169 587.00
IUUC-Pan-092302 Papio anubis 63.05 5.00e-168 584.00
IUUC-Psi-093604 Pelodiscus sinensis 42.64 8.00e-78 284.00
IUUC-Pfo-096441 Poecilia formosa 48.12 4.00e-36 145.00
IUUC-Pab-097729 Pongo abelii 63.22 2.00e-165 575.00
IUUC-Pop-099737 Populus trichocarpa 37.33 1.00e-09 58.90
IUUC-Pca-100552 Procavia capensis 47.66 3.00e-81 295.00
IUUC-Ppe-102024 Prunus persica 38.04 2.00e-11 65.10
IUUC-Pva-102780 Pteropus vampyrus 66.49 0.00e+00 627.00
IUUC-Rno-105461 Rattus norvegicus 82.89 0.00e+00 820.00
IUUC-Sha-106809 Sarcophilus harrisii 47.73 2.00e-114 406.00
IUUC-Sly-111317 Solanum lycopersicum 43.04 6.00e-14 72.00
IUUC-Stu-112783 Solanum tuberosum 41.77 2.00e-13 70.10
IUUC-Sar-113579 Sorex araneus 53.70 5.00e-134 471.00
IUUC-Tgu-117187 Taeniopygia guttata 61.11 5.00e-54 203.00
IUUC-Tru-118182 Takifugu rubripes 51.82 2.00e-32 133.00
IUUC-Tsy-119217 Tarsius syrichta 47.04 3.00e-41 162.00
IUUC-Tni-120205 Tetraodon nigroviridis 50.33 3.00e-42 165.00
IUUC-Tca-121416 Theobroma cacao 39.24 4.00e-12 65.90
IUUC-Tvi-122557 Trichoderma virens 30.49 3.00e-05 43.10
IUUC-Tbe-127622 Tupaia belangeri 63.57 0.00e+00 628.00
IUUC-Ttr-128988 Tursiops truncatus 67.84 0.00e+00 639.00
IUUC-Vpa-130302 Vicugna pacos 55.85 1.00e-95 343.00
IUUC-Vvi-131424 Vitis vinifera 37.97 2.00e-10 59.70
Created Date 25-Jun-2017

https://dev.news.makassarkota.go.id/public/pgsoft-demo/ https://jdih.sumbawabaratkab.go.id/lato/pg-soft-demo/ https://dev.news.makassarkota.go.id/public/slot-gacor/ http://pbb.tanahbumbukab.go.id/-/slot-gacor/ slot gacor https://siakad.unipra.ac.id/sass/slot-gacor-x500/ http://kpm.dinus.ac.id/assets/images/berita/slot/
Copyright © 2004-2017.The CUCKOO Workgroup. All Rights Reserved